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Search of human proteins with 4759000
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
(219 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 444 e-125
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 352 1e-97
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 346 8e-96
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 337 4e-93
gi|16933567 mel transforming oncogene [Homo sapiens] 208 3e-54
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 206 2e-53
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 199 2e-51
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 189 2e-48
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 187 6e-48
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 184 5e-47
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 183 9e-47
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 183 9e-47
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 183 9e-47
gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens] 182 1e-46
gi|34485711 Ras-related protein Rab-27A [Homo sapiens] 179 2e-45
gi|34485709 Ras-related protein Rab-27A [Homo sapiens] 179 2e-45
gi|34485706 Ras-related protein Rab-27A [Homo sapiens] 179 2e-45
gi|19923264 Ras-related protein Rab-27A [Homo sapiens] 179 2e-45
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 174 5e-44
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 171 6e-43
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 156 1e-38
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 155 3e-38
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 155 3e-38
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 155 3e-38
gi|116812567 RAB25 [Homo sapiens] 153 1e-37
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 153 1e-37
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa... 150 8e-37
gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo s... 150 1e-36
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 150 1e-36
gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo sa... 147 5e-36
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 444 bits (1142), Expect = e-125
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MASAGDTQAGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60
MASAGDTQAGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK
Sbjct: 1 MASAGDTQAGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60
Query: 61 VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120
VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI
Sbjct: 61 VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120
Query: 121 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV
Sbjct: 121 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
Query: 181 DVICEKMNESLEPSSSSGSNGKGPAVGDAPAPQPSSCSC 219
DVICEKMNESLEPSSSSGSNGKGPAVGDAPAPQPSSCSC
Sbjct: 181 DVICEKMNESLEPSSSSGSNGKGPAVGDAPAPQPSSCSC 219
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 352 bits (904), Expect = 1e-97
Identities = 170/220 (77%), Positives = 195/220 (88%), Gaps = 1/220 (0%)
Query: 1 MASAGDTQAGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60
MASA D++ G ++++DQNFDYMFK+L+IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK
Sbjct: 1 MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60
Query: 61 VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120
VKT+YR+DKRIKLQIWDTAGQERYRTITTAYYRGAMGF+LMYDI N+ESF AVQDW+TQI
Sbjct: 61 VKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI 120
Query: 121 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
KTYSWDNAQV+LVGNKCD+EDERVV +E GR+LAD LGFEFFEASAK+NINVKQ FERLV
Sbjct: 121 KTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 180
Query: 181 DVICEKMNESLEPSSSSGSNGK-GPAVGDAPAPQPSSCSC 219
DVICEKM+ESL+ + + + K GP + D P C+C
Sbjct: 181 DVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQDCAC 220
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 346 bits (888), Expect = 8e-96
Identities = 166/219 (75%), Positives = 189/219 (86%)
Query: 1 MASAGDTQAGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60
MAS D + G +DA+DQNFDYMFKLL+IGNSSVGKTSFLFRYADD+FTPAFVSTVGIDFK
Sbjct: 1 MASVTDGKTGVKDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFK 60
Query: 61 VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120
VKTVYRH+KR+KLQIWDTAGQERYRTITTAYYRGAMGF+LMYDI N+ESF AVQDWATQI
Sbjct: 61 VKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI 120
Query: 121 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
KTYSWDNAQVILVGNKCD+E+ERVVP E G+ LA+ LGF+FFEASAKENI+V+Q FERLV
Sbjct: 121 KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 180
Query: 181 DVICEKMNESLEPSSSSGSNGKGPAVGDAPAPQPSSCSC 219
D IC+KM++SL+ S + K + D P +CSC
Sbjct: 181 DAICDKMSDSLDTDPSMLGSSKNTRLSDTPPLLQQNCSC 219
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 337 bits (865), Expect = 4e-93
Identities = 161/219 (73%), Positives = 188/219 (85%)
Query: 1 MASAGDTQAGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60
MASA D + G +D++DQNFDYMFKLL+IGNSSVGKTSFLFRYADDSFT AFVSTVGIDFK
Sbjct: 9 MASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK 68
Query: 61 VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120
VKTV++++KRIKLQIWDTAGQERYRTITTAYYRGAMGF+LMYDI N+ESF AVQDW+TQI
Sbjct: 69 VKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI 128
Query: 121 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
KTYSWDNAQVILVGNKCD+EDERV+ E G+ L + LGFEFFE SAK+NINVKQ FERLV
Sbjct: 129 KTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLV 188
Query: 181 DVICEKMNESLEPSSSSGSNGKGPAVGDAPAPQPSSCSC 219
D+IC+KM+ESLE + + + + + P P +C+C
Sbjct: 189 DIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC 227
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 208 bits (529), Expect = 3e-54
Identities = 99/184 (53%), Positives = 136/184 (73%)
Query: 17 QNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76
+ +DY+FKLLLIG+S VGKT LFR+++D+F F+ST+GIDFK++T+ KRIKLQIW
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136
DTAGQER+RTITTAYYRGAMG +L+YDI N++SF +++W I+ ++ + + +++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSS 196
CD+ D+R V E G +LA D G +F E SAK NINV+ F L I KM++ LE +S
Sbjct: 123 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSP 182
Query: 197 SGSN 200
GSN
Sbjct: 183 QGSN 186
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 206 bits (523), Expect = 2e-53
Identities = 94/185 (50%), Positives = 136/185 (73%)
Query: 17 QNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76
+ +DY+FKLLLIG+S VGKT LFR+++D+F F+ST+GIDFK++T+ K+IKLQIW
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
Query: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136
DTAGQER+RTITTAYYRGAMG +L+YDI N++SF +++W I+ ++ + + +++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
Query: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSS 196
CD+ D+R V E G +LA D G +F E SAK + NV++ F L I K+N + S+S
Sbjct: 123 CDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNS 182
Query: 197 SGSNG 201
+G+ G
Sbjct: 183 AGAGG 187
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 199 bits (505), Expect = 2e-51
Identities = 97/193 (50%), Positives = 135/193 (69%), Gaps = 6/193 (3%)
Query: 15 ADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQ 74
A + +D +FKLLLIG+S VGKT LFR++DD+F F+ST+GIDFK+KTV K+IKLQ
Sbjct: 2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQ 61
Query: 75 IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVG 134
IWDTAGQER+ TITT+YYRGAMG +L+YDI N +SF + W I ++ ++ + +L+G
Sbjct: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLG 121
Query: 135 NKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM------N 188
NKCD++D+RVVP G ++A + G FFE SAK NIN+++ F L + I K +
Sbjct: 122 NKCDMDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNS 181
Query: 189 ESLEPSSSSGSNG 201
E+++ SS G G
Sbjct: 182 ENVDISSGGGVTG 194
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 189 bits (480), Expect = 2e-48
Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 3/201 (1%)
Query: 19 FDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDT 78
+DY+FKLLLIG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K IKLQIWDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138
AGQER+RTIT++YYRGA G +++YD+ +QESF V+ W +I Y+ +N +LVGNKCD
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
Query: 139 LEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSG 198
L ++VV + AD LG F E SAK NV+Q F + I ++M +
Sbjct: 128 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 187
Query: 199 SNGKGPAVGDAPAPQPSSCSC 219
SN K + P Q C
Sbjct: 188 SNVK---IQSTPVKQSGGGCC 205
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 187 bits (475), Expect = 6e-48
Identities = 91/201 (45%), Positives = 132/201 (65%), Gaps = 5/201 (2%)
Query: 19 FDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDT 78
+DY+FKLLLIG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K IKLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138
AGQER+RTIT++YYRGA G +++YD+ +QES+A V+ W +I Y+ +N +LVGNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 139 LEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSG 198
L ++VV + AD LG F E SAK NV+Q F + I ++M P ++SG
Sbjct: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG----PGAASG 180
Query: 199 SNGKGPAVGDAPAPQPSSCSC 219
+ P +P+ C
Sbjct: 181 GERPNLKIDSTPV-KPAGGGC 200
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 184 bits (467), Expect = 5e-47
Identities = 90/187 (48%), Positives = 127/187 (67%), Gaps = 5/187 (2%)
Query: 19 FDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDT 78
+D++FKLLLIG+S VGKT + R+A+D+F ++ST+GIDFK++TV K+IKLQ+WDT
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 64
Query: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138
AGQER++TITTAYYRGAMG +L+YDI +++SF +Q+W IK + + +L+GNKCD
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 124
Query: 139 LEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSG 198
+E +R V E +LA + G FFE SAK ++NV + F L I K SG
Sbjct: 125 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG-----GRRSG 179
Query: 199 SNGKGPA 205
+ K P+
Sbjct: 180 NGNKPPS 186
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 183 bits (465), Expect = 9e-47
Identities = 92/197 (46%), Positives = 129/197 (65%), Gaps = 5/197 (2%)
Query: 9 AGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD 68
A P A + +D++FKLLLIG+S VGKT + R+A+D+F ++ST+GIDFK++TV
Sbjct: 119 APPVSAMAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEG 178
Query: 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128
K+IKLQ+WDTAGQER++TITTAYYRGAMG +L YDI +++SF +Q+W I +
Sbjct: 179 KKIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGV 238
Query: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188
+ +L+GNKCD+E +R V E +LA + G FFE SAK ++NV + F L I K
Sbjct: 239 EHLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG 298
Query: 189 ESLEPSSSSGSNGKGPA 205
SG+ K P+
Sbjct: 299 -----GRRSGNGNKPPS 310
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 183 bits (465), Expect = 9e-47
Identities = 92/197 (46%), Positives = 129/197 (65%), Gaps = 5/197 (2%)
Query: 9 AGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD 68
A P A + +D++FKLLLIG+S VGKT + R+A+D+F ++ST+GIDFK++TV
Sbjct: 119 APPVSAMAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEG 178
Query: 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128
K+IKLQ+WDTAGQER++TITTAYYRGAMG +L YDI +++SF +Q+W I +
Sbjct: 179 KKIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGV 238
Query: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188
+ +L+GNKCD+E +R V E +LA + G FFE SAK ++NV + F L I K
Sbjct: 239 EHLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG 298
Query: 189 ESLEPSSSSGSNGKGPA 205
SG+ K P+
Sbjct: 299 -----GRRSGNGNKPPS 310
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 183 bits (465), Expect = 9e-47
Identities = 92/197 (46%), Positives = 129/197 (65%), Gaps = 5/197 (2%)
Query: 9 AGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD 68
A P A + +D++FKLLLIG+S VGKT + R+A+D+F ++ST+GIDFK++TV
Sbjct: 119 APPVSAMAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEG 178
Query: 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128
K+IKLQ+WDTAGQER++TITTAYYRGAMG +L YDI +++SF +Q+W I +
Sbjct: 179 KKIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGV 238
Query: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188
+ +L+GNKCD+E +R V E +LA + G FFE SAK ++NV + F L I K
Sbjct: 239 EHLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG 298
Query: 189 ESLEPSSSSGSNGKGPA 205
SG+ K P+
Sbjct: 299 -----GRRSGNGNKPPS 310
>gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 182 bits (463), Expect = 1e-46
Identities = 90/216 (41%), Positives = 138/216 (63%), Gaps = 12/216 (5%)
Query: 16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK------ 69
D ++DY+ KLL +G+S VGKT+FL+RY D+ F P F++TVGIDF+ K V + +
Sbjct: 3 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 62
Query: 70 ----RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW 125
++ LQ+WDTAGQER+R++TTA++R AMGFLLM+D+ +Q+SF V++W +Q++ ++
Sbjct: 63 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 122
Query: 126 -DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC 184
+N ++L+GNK DL D+R V R LAD G +FE SA NV++ E L+D+I
Sbjct: 123 CENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 182
Query: 185 EKMNESLEPSSSSGS-NGKGPAVGDAPAPQPSSCSC 219
++M + +E + + NG D P C C
Sbjct: 183 KRMEQCVEKTQIPDTVNGGNSGNLDGEKPPEKKCIC 218
>gi|34485711 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 179 bits (453), Expect = 2e-45
Identities = 90/220 (40%), Positives = 138/220 (62%), Gaps = 15/220 (6%)
Query: 15 ADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK-TVYR------- 66
+D ++DY+ K L +G+S VGKTS L++Y D F F++TVGIDF+ K VYR
Sbjct: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
Query: 67 --HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS 124
+RI LQ+WDTAGQER+R++TTA++R AMGFLL++D+ N++SF V++W +Q++ ++
Sbjct: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
Query: 125 W-DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
+ +N ++L GNK DLED+RVV E+ LA+ G +FE SA N+ Q E L+D+I
Sbjct: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
Query: 184 CEKMNESLE----PSSSSGSNGKGPAVGDAPAPQPSSCSC 219
++M ++ P SNG + + +C C
Sbjct: 182 MKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|34485709 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 179 bits (453), Expect = 2e-45
Identities = 90/220 (40%), Positives = 138/220 (62%), Gaps = 15/220 (6%)
Query: 15 ADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK-TVYR------- 66
+D ++DY+ K L +G+S VGKTS L++Y D F F++TVGIDF+ K VYR
Sbjct: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
Query: 67 --HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS 124
+RI LQ+WDTAGQER+R++TTA++R AMGFLL++D+ N++SF V++W +Q++ ++
Sbjct: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
Query: 125 W-DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
+ +N ++L GNK DLED+RVV E+ LA+ G +FE SA N+ Q E L+D+I
Sbjct: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
Query: 184 CEKMNESLE----PSSSSGSNGKGPAVGDAPAPQPSSCSC 219
++M ++ P SNG + + +C C
Sbjct: 182 MKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|34485706 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 179 bits (453), Expect = 2e-45
Identities = 90/220 (40%), Positives = 138/220 (62%), Gaps = 15/220 (6%)
Query: 15 ADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK-TVYR------- 66
+D ++DY+ K L +G+S VGKTS L++Y D F F++TVGIDF+ K VYR
Sbjct: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
Query: 67 --HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS 124
+RI LQ+WDTAGQER+R++TTA++R AMGFLL++D+ N++SF V++W +Q++ ++
Sbjct: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
Query: 125 W-DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
+ +N ++L GNK DLED+RVV E+ LA+ G +FE SA N+ Q E L+D+I
Sbjct: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
Query: 184 CEKMNESLE----PSSSSGSNGKGPAVGDAPAPQPSSCSC 219
++M ++ P SNG + + +C C
Sbjct: 182 MKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|19923264 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 179 bits (453), Expect = 2e-45
Identities = 90/220 (40%), Positives = 138/220 (62%), Gaps = 15/220 (6%)
Query: 15 ADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK-TVYR------- 66
+D ++DY+ K L +G+S VGKTS L++Y D F F++TVGIDF+ K VYR
Sbjct: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
Query: 67 --HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS 124
+RI LQ+WDTAGQER+R++TTA++R AMGFLL++D+ N++SF V++W +Q++ ++
Sbjct: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
Query: 125 W-DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
+ +N ++L GNK DLED+RVV E+ LA+ G +FE SA N+ Q E L+D+I
Sbjct: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
Query: 184 CEKMNESLE----PSSSSGSNGKGPAVGDAPAPQPSSCSC 219
++M ++ P SNG + + +C C
Sbjct: 182 MKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 174 bits (441), Expect = 5e-44
Identities = 79/184 (42%), Positives = 129/184 (70%), Gaps = 1/184 (0%)
Query: 17 QNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76
+++D++FKLL+IG+S VGK+S L R+AD++F+ ++++T+G+DFK++TV + +++KLQIW
Sbjct: 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 62
Query: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136
DTAGQER+RTIT+ YYRG G +++YD+ + ESF V+ W +I + D+ ILVGNK
Sbjct: 63 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNK 121
Query: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSS 196
D + +VV ED + A +G + FE SAKEN+NV+++F + +++ ++L
Sbjct: 122 NDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQ 181
Query: 197 SGSN 200
N
Sbjct: 182 QQQN 185
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 171 bits (432), Expect = 6e-43
Identities = 90/205 (43%), Positives = 132/205 (64%), Gaps = 5/205 (2%)
Query: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
D+ ++++IG+ VGKTS + R+ DD+F A STVG+DFK+KTV K+I+LQIWDTA
Sbjct: 40 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
Query: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
GQER+ +IT+AYYR A G +L+YDI +E+F + W I Y+ ++A+++LVGNK D
Sbjct: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
Query: 140 EDERVVPAEDGRRLADDL-GFEFFEASAKENINVKQVFERLVDVICEKMNESL---EPSS 195
E +R + + G + A + G F EASAK+N NV ++F +LVD I +KM + E S+
Sbjct: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 219
Query: 196 SSGSNGKGPAV-GDAPAPQPSSCSC 219
S S P + + P P+P C
Sbjct: 220 SILSLQPEPEIPPELPPPRPHVRCC 244
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 156 bits (394), Expect = 1e-38
Identities = 77/193 (39%), Positives = 118/193 (61%), Gaps = 4/193 (2%)
Query: 16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQI 75
D +DY+FK++LIG+S VGK++ L R+ + F ST+G++F +++ K IK QI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 76 WDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135
WDTAGQERYR IT+AYYRGA+G LL+YDIA ++ V+ W +++ ++ N ++LVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD----VICEKMNESL 191
K DL R VP ++ R A+ G F E SA ++ NV+ F+ ++ ++ +K
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDR 184
Query: 192 EPSSSSGSNGKGP 204
+ S SN P
Sbjct: 185 RENDMSPSNNVVP 197
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 155 bits (392), Expect = 3e-38
Identities = 76/197 (38%), Positives = 119/197 (60%)
Query: 16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQI 75
D +DY+FK++LIG+S VGK++ L R+ + F ST+G++F +++ K IK QI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 76 WDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135
WDTAGQERYR IT+AYYRGA+G LL+YDIA ++ V+ W +++ ++ N ++LVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSS 195
K DL R VP ++ R A+ F E SA ++ NV++ F+ ++ I +++
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 184
Query: 196 SSGSNGKGPAVGDAPAP 212
++ G V D P
Sbjct: 185 AAHDESPGNNVVDISVP 201
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 155 bits (392), Expect = 3e-38
Identities = 75/160 (46%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
Query: 18 NFDYMFKLLLIGNSSVGKTSFLFRYADDSF-TPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76
++D K++L+G++ VGKT FL ++ D +F + F++TVGIDF+ K V R+KLQIW
Sbjct: 25 SYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIW 84
Query: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136
DTAGQER+R++T AYYR A LL+YDI N+ SF ++ W T+I Y+ + ++L+GNK
Sbjct: 85 DTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNK 144
Query: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176
D+ ERV+ +EDG LA + G F E SAK +NV+ F
Sbjct: 145 ADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAF 184
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 155 bits (391), Expect = 3e-38
Identities = 79/177 (44%), Positives = 112/177 (63%), Gaps = 2/177 (1%)
Query: 19 FDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTVYRHDKRIKLQIWD 77
+D FK++L+G+S VGKT L R+ D +F F+STVGIDF+ K + ++KLQ+WD
Sbjct: 60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 119
Query: 78 TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKC 137
TAGQER+R++T AYYR A LL+YD+ N+ SF +Q W T+I Y+ + ++L+GNK
Sbjct: 120 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 179
Query: 138 DLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK-MNESLEP 193
D ERVV EDG +LA + G F E SAK +NV F + + ++ M EP
Sbjct: 180 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQRSMKAPSEP 236
>gi|116812567 RAB25 [Homo sapiens]
Length = 213
Score = 153 bits (387), Expect = 1e-37
Identities = 77/208 (37%), Positives = 125/208 (60%), Gaps = 1/208 (0%)
Query: 13 DAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIK 72
+ +++++++FK++LIG S VGKT+ L R+ + F+ +T+G++F +TV +K
Sbjct: 3 NGTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 62
Query: 73 LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL 132
QIWDTAG ERYR IT+AYYRGA+G LL++D+ +++A V+ W ++ ++ V+L
Sbjct: 63 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 122
Query: 133 VGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLE 192
VGNK DL R VP E+ R A++ G F E SA ++ NV+ FE ++ I K+++ +
Sbjct: 123 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQ 182
Query: 193 PSSSSGSNGKGPA-VGDAPAPQPSSCSC 219
S + + G A G P P C
Sbjct: 183 NSIRTNAITLGSAQAGQEPGPGEKRACC 210
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 153 bits (386), Expect = 1e-37
Identities = 79/211 (37%), Positives = 126/211 (59%), Gaps = 7/211 (3%)
Query: 14 AADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
AAD+NFDY+FK++LIG+S+VGKT + + +T +T+G+DF V+++ K++K+
Sbjct: 9 AADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKM 68
Query: 74 QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Q+WDTAGQER+RTIT +YYR A ++ YD+ + +F ++ W +I+ Y N ++L+
Sbjct: 69 QVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLI 128
Query: 134 GNKCDLEDERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVICEKMNESLE 192
GNKCDL ++R V ED LA+ G E SAKE+ N+++VF + + + SL
Sbjct: 129 GNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIAR--NSLH 186
Query: 193 PSSSSGSNG----KGPAVGDAPAPQPSSCSC 219
S NG P + + + C+C
Sbjct: 187 LYGESALNGLPLDSSPVLMAQGPSEKTHCTC 217
>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
sapiens]
Length = 216
Score = 150 bits (379), Expect = 8e-37
Identities = 79/169 (46%), Positives = 107/169 (63%), Gaps = 5/169 (2%)
Query: 9 AGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTVYRH 67
AGP D N + K +L+G+S VGKTS L ++ F P +F +TVGI F K V
Sbjct: 13 AGP----DFNDHVLHKTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVVTVD 68
Query: 68 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN 127
R+KLQIWDTAGQER+R++T AYYR A LL+YDI N+ SF ++ W T+I Y+ +
Sbjct: 69 GVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRD 128
Query: 128 AQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176
++L+GNK D+ ERV+ +EDG LA + G F E SAK +NV+ F
Sbjct: 129 VVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAF 177
>gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo
sapiens]
Length = 731
Score = 150 bits (378), Expect = 1e-36
Identities = 75/183 (40%), Positives = 114/183 (62%)
Query: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
D +FK++ +GNS+VGKTSFL R+ +D F+P +TVGID++VKT+ + ++ LQ+WDTA
Sbjct: 543 DRLFKIVFVGNSAVGKTSFLRRFCEDRFSPGMAATVGIDYRVKTLNVDNSQVALQLWDTA 602
Query: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
GQERYR IT ++R A G ++MYD+ +++SF +V+ W + ++ D V+L+GNK D
Sbjct: 603 GQERYRCITQQFFRKADGVIVMYDLTDKQSFLSVRRWLSSVEEAVGDRVPVLLLGNKLDN 662
Query: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSGS 199
E ER VP G +LA + F+E SA N K+ L + E+ + E + G
Sbjct: 663 EKEREVPRGLGEQLATENNLIFYECSAYSGHNTKESLLHLARFLKEQEDTVREDTIQVGH 722
Query: 200 NGK 202
K
Sbjct: 723 PAK 725
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 150 bits (378), Expect = 1e-36
Identities = 75/191 (39%), Positives = 120/191 (62%), Gaps = 1/191 (0%)
Query: 17 QNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76
+++D++FK++LIGN+ VGKT + R+ F P +T+G+DF +KTV + +++KLQIW
Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 63
Query: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136
DTAGQER+R+IT +YYR A +L YDI +ESF + +W +I+ Y+ + +LVGNK
Sbjct: 64 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 123
Query: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV-DVICEKMNESLEPSS 195
DL + R V + ++ + E SAKE+ NV+++F L +I E +L +
Sbjct: 124 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNV 183
Query: 196 SSGSNGKGPAV 206
SS G+G ++
Sbjct: 184 SSPLPGEGKSI 194
>gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo
sapiens]
Length = 208
Score = 147 bits (372), Expect = 5e-36
Identities = 79/200 (39%), Positives = 112/200 (56%), Gaps = 8/200 (4%)
Query: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
FKL+ +G SVGKTS + R+ DSF + +T+GIDF KT+Y D+ I+LQ+WDTAGQE
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 73
Query: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
R+R++ +Y R + +++YDI N SF W ++T + ++LVGNK DL D+
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSGSNGK 202
R V E+G R A +L F E SAK NVKQ+F R+ + +E +
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL-----PGMESTQDRSREDM 188
Query: 203 GPAVGDAPAPQPSS---CSC 219
+ P QP S CSC
Sbjct: 189 IDIKLEKPQEQPVSEGGCSC 208
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,166,249
Number of Sequences: 37866
Number of extensions: 328868
Number of successful extensions: 1760
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1357
Number of HSP's gapped (non-prelim): 251
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.