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Search of human proteins with 4758996
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758996 Ras-related protein Rab-33A [Homo sapiens]
(237 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758996 Ras-related protein Rab-33A [Homo sapiens] 480 e-136
gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens] 265 3e-71
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 162 3e-40
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 160 1e-39
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 157 1e-38
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 153 1e-37
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 150 9e-37
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 145 2e-35
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 145 2e-35
gi|16933567 mel transforming oncogene [Homo sapiens] 144 9e-35
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 144 9e-35
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 142 3e-34
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 142 3e-34
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 142 3e-34
gi|50234889 RAB43 protein [Homo sapiens] 140 7e-34
gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens] 140 1e-33
gi|10880989 RAB18, member RAS oncogene family [Homo sapiens] 133 2e-31
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 131 6e-31
gi|39930371 RAB39, member RAS oncogene family [Homo sapiens] 130 1e-30
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 129 2e-30
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 129 2e-30
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 125 2e-29
gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo sa... 125 4e-29
gi|19923483 GTPase Rab14 [Homo sapiens] 125 4e-29
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 124 7e-29
gi|40255119 RAS and EF-hand domain containing [Homo sapiens] 124 9e-29
gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens] 123 1e-28
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 123 2e-28
gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo sa... 123 2e-28
gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo sa... 122 3e-28
>gi|4758996 Ras-related protein Rab-33A [Homo sapiens]
Length = 237
Score = 480 bits (1235), Expect = e-136
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MAQPILGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGT 60
MAQPILGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGT
Sbjct: 1 MAQPILGHGSLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGT 60
Query: 61 FPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVT 120
FPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVT
Sbjct: 61 FPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVT 120
Query: 121 KMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFET 180
KMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFET
Sbjct: 121 KMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLREQIQVPSNLALKFADAHNMLLFET 180
Query: 181 SAKDPKESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTSCPC 237
SAKDPKESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTSCPC
Sbjct: 181 SAKDPKESQNVESIFMCLACRLKAQKSLLYRDAERQQGKVQKLEFPQEANSKTSCPC 237
>gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens]
Length = 229
Score = 265 bits (677), Expect = 3e-71
Identities = 124/175 (70%), Positives = 150/175 (85%)
Query: 35 RIFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAG 94
RIFKIIVIGDSNVGKTCLT+RFC G FPD+TEATIGVDFRE+ VEI+GE+IK+Q+WDTAG
Sbjct: 32 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAG 91
Query: 95 QERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCD 154
QERFRKSMV+HYYRNVHAVVFVYD+T M SF +L WI+EC H + +P++LVGNKCD
Sbjct: 92 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCD 151
Query: 155 LREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSLL 209
LR IQVP++LA KFAD H+M LFETSAK+P ++ +VE+IFM LA +LK+ K L+
Sbjct: 152 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLM 206
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 162 bits (409), Expect = 3e-40
Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 5/167 (2%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FKI++IG++ VGKTCL RF G FP ATIGVDF KTVEI GEK+K+Q+WDTAGQ
Sbjct: 9 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 68
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERFR S+ + YYR+ +A++ YD+T SF L W++E +A ++ VLVGNK DL
Sbjct: 69 ERFR-SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT-VLVGNKIDL 126
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRL 202
E+ +V A +F++A +M ETSA KES NVE +F+ LACRL
Sbjct: 127 AERREVSQQRAEEFSEAQDMYYLETSA---KESDNVEKLFLDLACRL 170
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 160 bits (404), Expect = 1e-39
Identities = 95/203 (46%), Positives = 124/203 (61%), Gaps = 11/203 (5%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK+++IGDS VGK+ L RF TF TIGVDF+ +TVEI GEK+K+Q+WDTAGQ
Sbjct: 8 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 67
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERFR ++ YYR H V+ VYDVT SF N+K W+ E N + V ++LVGNK D
Sbjct: 68 ERFR-TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD--VCRILVGNKNDD 124
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLA-CRLKAQKSLLYRDAE 214
E+ V + A KFA + LFETSA KE+ NVE +F C+ L+A+K L + +
Sbjct: 125 PERKVVETEDAYKFAGQMGIQLFETSA---KENVNVEEMFNCITELVLRAKKDNLAKQQQ 181
Query: 215 RQQGKVQKLEFPQEANSKTSCPC 237
+QQ V KL NSK C
Sbjct: 182 QQQNDVVKL----TKNSKRKKRC 200
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 157 bits (396), Expect = 1e-38
Identities = 85/194 (43%), Positives = 121/194 (62%), Gaps = 7/194 (3%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK+++IGDS VGK+CL RF T+ + +TIGVDF+ +T+E++G+ IK+Q+WDTAGQ
Sbjct: 11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERFR ++ YYR H ++ VYDVT SF N+K W+QE + +A V K+LVGNKCDL
Sbjct: 71 ERFR-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDL 128
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQ--KSLLYRDA 213
+ V A +FAD+ + ETSAK+ + NVE FM +A +K + A
Sbjct: 129 TTKKVVDYTTAKEFADSLGIPFLETSAKN---ATNVEQSFMTMAAEIKKRMGPGATAGGA 185
Query: 214 ERQQGKVQKLEFPQ 227
E+ K+Q Q
Sbjct: 186 EKSNVKIQSTPVKQ 199
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 153 bits (386), Expect = 1e-37
Identities = 78/168 (46%), Positives = 113/168 (67%), Gaps = 5/168 (2%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK+++IGDS VGK+CL RF T+ + +TIGVDF+ +T+E++G+ IK+Q+WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERFR ++ YYR H ++ VYDVT S+ N+K W+QE + +A V K+LVGNK DL
Sbjct: 68 ERFR-TITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SENVNKLLVGNKSDL 125
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLK 203
+ V + A +FAD+ + ETSAK+ + NVE FM +A +K
Sbjct: 126 TTKKVVDNTTAKEFADSLGIPFLETSAKN---ATNVEQAFMTMAAEIK 170
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 150 bits (379), Expect = 9e-37
Identities = 85/206 (41%), Positives = 130/206 (63%), Gaps = 9/206 (4%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FKII+IGDSNVGKTC+ F G + + + TIGVDF ++++I+G+K+K+QVWDTAGQ
Sbjct: 17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQ 76
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERFR ++ + YYR+ HA + YD+T+ ++F ++ WI E + +V +L+GNKCDL
Sbjct: 77 ERFR-TITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVV-IMLIGNKCDL 134
Query: 156 REQIQVPSNLALKFADAHNML-LFETSAKDPKESQNVESIFMCLACRLKAQKSL-LYRDA 213
E+ V A A+ + +L + ETSA KES+N+E +F+ +A L A+ SL LY ++
Sbjct: 135 WEKRHVLFEDACTLAEKYGLLAVLETSA---KESKNIEEVFVLMAKELIARNSLHLYGES 191
Query: 214 ERQQGKVQK--LEFPQEANSKTSCPC 237
+ + Q + KT C C
Sbjct: 192 ALNGLPLDSSPVLMAQGPSEKTHCTC 217
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 145 bits (367), Expect = 2e-35
Identities = 83/198 (41%), Positives = 118/198 (59%), Gaps = 14/198 (7%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK+++IGDS VGKTCL RF F + +TIG+DF+ +TV+IEG+KIK+QVWDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQ 67
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERF K++ YYR ++ VYD+T SF N++ W++ +A V ++L+GNKCD+
Sbjct: 68 ERF-KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAG-VERLLLGNKCDM 125
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSLLYRDAER 215
+ +V A K A H + FETSA K S NV+ F LA + +L + R
Sbjct: 126 EAKRKVQKEQADKLAREHGIRFFETSA---KSSMNVDEAFSSLA------RDILLKSGGR 176
Query: 216 QQGKVQKLEFPQEANSKT 233
+ G K P + KT
Sbjct: 177 RSGNGNK---PPSTDLKT 191
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 145 bits (367), Expect = 2e-35
Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 6/199 (3%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK+++IGDS VGKTCL FRF F +TIG+DF+ +T+E++G+KIK+Q+WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 67
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERFR ++ YYR ++ VYD+T SF N+K WI+ HA V ++++GNKCD+
Sbjct: 68 ERFR-TITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSD-VERMILGNKCDM 125
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSLLYRDAER 215
++ QV K A + + ETSA K S NVE F LA + + + D+
Sbjct: 126 NDKRQVSKERGEKLAIDYGIKFLETSA---KSSANVEEAFFTLARDIMTKLNRKMNDS-N 181
Query: 216 QQGKVQKLEFPQEANSKTS 234
G ++ + + KTS
Sbjct: 182 SAGAGGPVKITENRSKKTS 200
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 144 bits (362), Expect = 9e-35
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 10/201 (4%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK+++IGDS VGKTC+ FRF F +TIG+DF+ +T+E++G++IK+Q+WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERFR ++ YYR ++ VYD+T SF N++ WI+ HA V K+++GNKCD+
Sbjct: 68 ERFR-TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD-VEKMILGNKCDV 125
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQ--KSLLYRDA 213
++ QV K A + + ETSA K + NVE+ F LA +KA+ K L +
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSA---KANINVENAFFTLARDIKAKMDKKL---EG 179
Query: 214 ERQQGKVQKLEFPQEANSKTS 234
QG Q ++ + ++S
Sbjct: 180 NSPQGSNQGVKITPDQQKRSS 200
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 144 bits (362), Expect = 9e-35
Identities = 73/164 (44%), Positives = 106/164 (64%), Gaps = 5/164 (3%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK+++IGDS VGKTC+ FRF F +TIG+DF+ KTVE++G+KIK+Q+WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQ 68
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERF ++ YYR ++ VYD+T SF N+ W++ + HA V ++L+GNKCD+
Sbjct: 69 ERFH-TITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANED-VERMLLGNKCDM 126
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLA 199
++ VP + A H + FETSA K + N+E F+ LA
Sbjct: 127 DDKRVVPKGKGGQIAREHGIRFFETSA---KANINIEKAFLTLA 167
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 142 bits (358), Expect = 3e-34
Identities = 82/198 (41%), Positives = 116/198 (58%), Gaps = 14/198 (7%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK+++IGDS VGKTCL RF F + +TIG+DF+ +TV+IEG+KIK+QVWDTAGQ
Sbjct: 132 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQ 191
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERF K++ YYR ++ YD+T SF N++ W++ +A V +L+GNKCD+
Sbjct: 192 ERF-KTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAG-VEHLLLGNKCDM 249
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSLLYRDAER 215
+ +V A K A H + FETSA K S NV+ F LA + +L + R
Sbjct: 250 EAKRKVQKEQADKLAREHGIRFFETSA---KSSMNVDEAFSSLA------RDILLKSGGR 300
Query: 216 QQGKVQKLEFPQEANSKT 233
+ G K P + KT
Sbjct: 301 RSGNGNK---PPSTDLKT 315
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 142 bits (358), Expect = 3e-34
Identities = 82/198 (41%), Positives = 116/198 (58%), Gaps = 14/198 (7%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK+++IGDS VGKTCL RF F + +TIG+DF+ +TV+IEG+KIK+QVWDTAGQ
Sbjct: 132 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQ 191
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERF K++ YYR ++ YD+T SF N++ W++ +A V +L+GNKCD+
Sbjct: 192 ERF-KTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAG-VEHLLLGNKCDM 249
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSLLYRDAER 215
+ +V A K A H + FETSA K S NV+ F LA + +L + R
Sbjct: 250 EAKRKVQKEQADKLAREHGIRFFETSA---KSSMNVDEAFSSLA------RDILLKSGGR 300
Query: 216 QQGKVQKLEFPQEANSKT 233
+ G K P + KT
Sbjct: 301 RSGNGNK---PPSTDLKT 315
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 142 bits (358), Expect = 3e-34
Identities = 82/198 (41%), Positives = 116/198 (58%), Gaps = 14/198 (7%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK+++IGDS VGKTCL RF F + +TIG+DF+ +TV+IEG+KIK+QVWDTAGQ
Sbjct: 132 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQ 191
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERF K++ YYR ++ YD+T SF N++ W++ +A V +L+GNKCD+
Sbjct: 192 ERF-KTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAG-VEHLLLGNKCDM 249
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSLLYRDAER 215
+ +V A K A H + FETSA K S NV+ F LA + +L + R
Sbjct: 250 EAKRKVQKEQADKLAREHGIRFFETSA---KSSMNVDEAFSSLA------RDILLKSGGR 300
Query: 216 QQGKVQKLEFPQEANSKT 233
+ G K P + KT
Sbjct: 301 RSGNGNK---PPSTDLKT 315
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 140 bits (354), Expect = 7e-34
Identities = 73/168 (43%), Positives = 115/168 (68%), Gaps = 6/168 (3%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK++++GD++VGKTC+ RF G F ++ +TIGVDF KT+EI+G+++K+Q+WDTAGQ
Sbjct: 18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 77
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERFR ++ + YYR+ + + YD+TK +SF ++ WI++ +A +V ++L+GNK DL
Sbjct: 78 ERFR-TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDL 135
Query: 156 REQIQVPSNLALKFADAHNML-LFETSAKDPKESQNVESIFMCLACRL 202
E +V A A+ +++L ETSAKD S NVE F+ +A L
Sbjct: 136 SELREVSLAEAQSLAEHYDILCAIETSAKD---SSNVEEAFLRVATEL 180
>gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]
Length = 213
Score = 140 bits (353), Expect = 1e-33
Identities = 78/160 (48%), Positives = 103/160 (64%), Gaps = 5/160 (3%)
Query: 37 FKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIE-GEKIKVQVWDTAGQ 95
F++IVIGDS VGK+CL RF G F ++ T+GVDF + VEIE G++IK+Q+WDTAGQ
Sbjct: 9 FRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQ 68
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERFR S+ YYRN + ++D+T SF N+ W++E H P + VLVG+KCDL
Sbjct: 69 ERFR-SITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDL 127
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIF 195
Q QV + A K A A+ M ETSA+D + NVE F
Sbjct: 128 DTQRQVTRHEAEKLAAAYGMKYIETSARD---AINVEKAF 164
>gi|10880989 RAB18, member RAS oncogene family [Homo sapiens]
Length = 206
Score = 133 bits (334), Expect = 2e-31
Identities = 68/146 (46%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 38 KIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQER 97
KI++IG+S VGK+ L RF TF + ATIGVDF+ KT+ ++G K K+ +WDTAGQER
Sbjct: 10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69
Query: 98 FRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLRE 157
FR ++ YYR V+ VYDVT+ +F L W+ E + + +LVGNK D +E
Sbjct: 70 FR-TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KE 127
Query: 158 QIQVPSNLALKFADAHNMLLFETSAK 183
+V N LKFA H+ML E SAK
Sbjct: 128 NREVDRNEGLKFARKHSMLFIEASAK 153
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 131 bits (329), Expect = 6e-31
Identities = 73/181 (40%), Positives = 113/181 (62%), Gaps = 8/181 (4%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK+++IGDS VGK+ L RF F ++++TIGV+F ++++++G+ IK Q+WDTAGQ
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ER+R ++ YYR + VYD+ K ++ N++ W++E HA +V +LVGNK DL
Sbjct: 71 ERYR-AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDL 128
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLAC---RLKAQKSLLYRD 212
R VP++ A FA+ +N+ ETSA D S NVE F + R+ +QK + R
Sbjct: 129 RHLRAVPTDEARAFAEKNNLSFIETSALD---STNVEEAFKNILTEIYRIVSQKQIADRA 185
Query: 213 A 213
A
Sbjct: 186 A 186
>gi|39930371 RAB39, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 130 bits (327), Expect = 1e-30
Identities = 77/167 (46%), Positives = 101/167 (60%), Gaps = 9/167 (5%)
Query: 37 FKIIVIGDSNVGKTCLTFRFCGGTFPD----KTEATIGVDFREKTVEIE-GEKIKVQVWD 91
F++IVIGDS VGK+CL RF G FP + T+GVDF + +EIE G++IK+Q+WD
Sbjct: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQLWD 68
Query: 92 TAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGN 151
TAGQERFR S+ YYRN V+D+T SF ++K W++E + P + +LVG+
Sbjct: 69 TAGQERFR-SITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVGH 127
Query: 152 KCDLREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCL 198
KCDL Q QV A K + M ETSAKD + NVE F L
Sbjct: 128 KCDLASQRQVTREEAEKLSADCGMKYIETSAKD---ATNVEESFTIL 171
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 129 bits (325), Expect = 2e-30
Identities = 75/207 (36%), Positives = 119/207 (57%), Gaps = 10/207 (4%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK+++IGDS VGK+ L RF F ++++TIGV+F ++++++G+ IK Q+WDTAGQ
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ER+R ++ YYR + VYD+ K ++ N++ W++E HA +V +LVGNK DL
Sbjct: 71 ERYR-AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDL 128
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLAC---RLKAQKSLLYR- 211
R VP++ A FA+ + + ETSA D S NVE+ F + R+ +QK + R
Sbjct: 129 RHLRAVPTDEARAFAEKNGLSFIETSALD---STNVEAAFQTILTEIYRIVSQKQMSDRR 185
Query: 212 -DAERQQGKVQKLEFPQEANSKTSCPC 237
+ V + P +K C
Sbjct: 186 ENDMSPSNNVVPIHVPPTTENKPKVQC 212
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 129 bits (325), Expect = 2e-30
Identities = 74/173 (42%), Positives = 107/173 (61%), Gaps = 7/173 (4%)
Query: 37 FKIIVIGDSNVGKTCLTFRFCGGTFPDKTE-ATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
FK++++GDS VGKTCL RF G F T +T+G+DFR K ++++G K+K+Q+WDTAGQ
Sbjct: 64 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 123
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERFR S+ YYR+ HA++ +YDVT SF N++ W+ E + +A V +L+GNK D
Sbjct: 124 ERFR-SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD-VALMLLGNKVDS 181
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSL 208
+ V K A + + ETSA K NV+ F +A LK Q+S+
Sbjct: 182 AHERVVKREDGEKLAKEYGLPFMETSA---KTGLNVDLAFTAIAKELK-QRSM 230
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 125 bits (315), Expect = 2e-29
Identities = 72/200 (36%), Positives = 115/200 (57%), Gaps = 13/200 (6%)
Query: 38 KIIVIGDSNVGKTCLTFRFCGGTFPDKTE-ATIGVDFREKTVEIEGEKIKVQVWDTAGQE 96
K++++GD+ VGKTC +F G F T AT+G+DFR K V ++G ++K+Q+WDTAGQE
Sbjct: 31 KVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQE 90
Query: 97 RFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLR 156
RFR S+ YYR+ A++ +YD+T +SF N++ W+ E + +A +V +L+GNK D+
Sbjct: 91 RFR-SVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVV-IMLLGNKADMS 148
Query: 157 EQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSLLYRDA-ER 215
+ + S A + + ETSA K NVE F+ +A K L YR +
Sbjct: 149 SERVIRSEDGETLAREYGVPFLETSA---KTGMNVELAFLAIA------KELKYRAGHQA 199
Query: 216 QQGKVQKLEFPQEANSKTSC 235
+ Q ++ + ++SC
Sbjct: 200 DEPSFQIRDYVESQKKRSSC 219
>gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo
sapiens]
Length = 208
Score = 125 bits (313), Expect = 4e-29
Identities = 79/205 (38%), Positives = 115/205 (56%), Gaps = 8/205 (3%)
Query: 34 IRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTA 93
+R FK++ +G+ +VGKT L RF +F + +ATIG+DF KT+ +E I++Q+WDTA
Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70
Query: 94 GQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKC 153
GQERFR S++ Y R+ A V VYD+T + SF WI + ++ +LVGNK
Sbjct: 71 GQERFR-SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKT 128
Query: 154 DLREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSLLYRDA 213
DL ++ QV + A N++ ETSA K NV+ +F +A L +S +D
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSA---KAGYNVKQLFRRVAAALPGMEST--QDR 183
Query: 214 ERQQGKVQKLEFPQEAN-SKTSCPC 237
R+ KLE PQE S+ C C
Sbjct: 184 SREDMIDIKLEKPQEQPVSEGGCSC 208
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 125 bits (313), Expect = 4e-29
Identities = 66/161 (40%), Positives = 95/161 (59%), Gaps = 5/161 (3%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
IFK I+IGD VGK+CL +F F TIGV+F + +E+ G+KIK+Q+WDTAGQ
Sbjct: 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 70
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
ERFR ++ YYR + VYD+T+ +++ +L W+ + P V +L+GNK DL
Sbjct: 71 ERFR-AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADL 128
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFM 196
Q V A +FA+ + +L E SA K +NVE F+
Sbjct: 129 EAQRDVTYEEAKQFAEENGLLFLEASA---KTGENVEDAFL 166
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 124 bits (311), Expect = 7e-29
Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 5/161 (3%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK I+IGD+ VGK+CL +F F + TIGV+F + + I+G++IK+Q+WDTAGQ
Sbjct: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 65
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
E FR S+ YYR + VYD+T+ +F +L W+++ H+ +V +L+GNK DL
Sbjct: 66 ESFR-SITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMV-IMLIGNKSDL 123
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFM 196
+ +V FA H ++ ETSA K + NVE F+
Sbjct: 124 ESRREVKKEEGEAFAREHGLIFMETSA---KTASNVEEAFI 161
>gi|40255119 RAS and EF-hand domain containing [Homo sapiens]
Length = 740
Score = 124 bits (310), Expect = 9e-29
Identities = 74/200 (37%), Positives = 110/200 (55%), Gaps = 11/200 (5%)
Query: 10 SLQPASAAGLASLELDSSLDQYVQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATI 69
S +P SA + +D + + + +KI++ GD+ VGK+ R C F + AT+
Sbjct: 515 SRKPISALSPQTDLVDDNAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL 574
Query: 70 GVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLK 129
GVDF+ KT+ ++GE+ +Q+WDTAGQERFR S+ + Y+R V+ +YDVT SF N++
Sbjct: 575 GVDFQMKTLIVDGERTVLQLWDTAGQERFR-SIAKSYFRKADGVLLLYDVTCEKSFLNIR 633
Query: 130 MWIQECNGHAVPPLVPKVLVGNKCDLRE------QIQVPSNLALKFADAHNMLLFETSAK 183
W+ A VP +LVGNK D+R+ Q VP + K A + L ETSAK
Sbjct: 634 EWVDMIE-DAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK 692
Query: 184 DPKESQNVESIFMCLACRLK 203
D N+ + LA +K
Sbjct: 693 D---GSNIVEAVLHLAREVK 709
>gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 123 bits (309), Expect = 1e-28
Identities = 69/166 (41%), Positives = 97/166 (58%), Gaps = 5/166 (3%)
Query: 37 FKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQE 96
FK++++G+S VGK+ L RF G F + E+TIG F +TV ++ +K ++WDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 80
Query: 97 RFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLR 156
R+ S+ YYR A + VYD+T SF K W++E A P +V L GNK DL
Sbjct: 81 RYH-SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLA 138
Query: 157 EQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRL 202
+ V A +AD +++L ETSA K S NV IFM +A +L
Sbjct: 139 NKRAVDFQEAQSYADDNSLLFMETSA---KTSMNVNEIFMAIAKKL 181
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 123 bits (308), Expect = 2e-28
Identities = 65/161 (40%), Positives = 96/161 (59%), Gaps = 5/161 (3%)
Query: 36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQ 95
+FK I+IGD+ VGK+CL +F F + TIGV+F + V I+G++IK+Q+WDTAGQ
Sbjct: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 65
Query: 96 ERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDL 155
E FR S+ YYR + VYD+T+ +F +L W+++ H+ +V +L+GNK DL
Sbjct: 66 ESFR-SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDL 123
Query: 156 REQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFM 196
+ V FA H ++ ETSA K + NVE F+
Sbjct: 124 ESRRDVKREEGEAFAREHGLIFMETSA---KTACNVEEAFI 161
>gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo
sapiens]
Length = 208
Score = 123 bits (308), Expect = 2e-28
Identities = 77/205 (37%), Positives = 114/205 (55%), Gaps = 8/205 (3%)
Query: 34 IRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTA 93
+R FK++ +G+ +VGKT L RF +F + +ATIG+DF KT+ +E +++Q+WDTA
Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70
Query: 94 GQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKC 153
GQERFR S++ Y R+ V VYD+T + SF WI + ++ +LVGNK
Sbjct: 71 GQERFR-SLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKT 128
Query: 154 DLREQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRLKAQKSLLYRDA 213
DL ++ QV + A N++ ETSA K NV+ +F +A L +S +D
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSA---KAGYNVKQLFRRVAAALPGMEST--QDR 183
Query: 214 ERQQGKVQKLEFPQEAN-SKTSCPC 237
R+ KLE PQE S+ C C
Sbjct: 184 SREDMIDIKLEKPQEQPVSEGGCSC 208
>gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo
sapiens]
Length = 216
Score = 122 bits (306), Expect = 3e-28
Identities = 67/166 (40%), Positives = 97/166 (58%), Gaps = 5/166 (3%)
Query: 37 FKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQE 96
FK++++G+S VGK+ L RF G F + E+TIG F +TV ++ +K ++WDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 97 RFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLR 156
R+ S+ YYR A + VYD+T +F K W++E A P +V L GNK DL
Sbjct: 82 RYH-SLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIV-IALAGNKADLA 139
Query: 157 EQIQVPSNLALKFADAHNMLLFETSAKDPKESQNVESIFMCLACRL 202
+ V A +AD +++L ETSA K + NV IFM +A +L
Sbjct: 140 SKRAVEFQEAQAYADDNSLLFMETSA---KTAMNVNEIFMAIAKKL 182
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,418,329
Number of Sequences: 37866
Number of extensions: 319479
Number of successful extensions: 1359
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 244
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.