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Search of human proteins with 4758790
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758790 NADH dehydrogenase (ubiquinone) Fe-S protein 5,
15kDa (NADH-coenzyme Q reductase) [Homo sapiens]
(106 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758790 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa... 231 1e-61
gi|169212344 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 198 7e-52
gi|169211738 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 198 7e-52
gi|169211073 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 198 7e-52
gi|239752823 PREDICTED: similar to NADH dehydrogenase [ubiquinon... 172 7e-44
gi|239747390 PREDICTED: hypothetical protein XP_002346575 [Homo ... 172 7e-44
gi|239741215 PREDICTED: hypothetical protein XP_002342136 [Homo ... 172 7e-44
gi|19923193 heat shock 70kD protein binding protein [Homo sapiens] 38 0.002
gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo sa... 33 0.038
gi|239787086 zinc finger protein 611 isoform b [Homo sapiens] 28 2.1
gi|239787084 zinc finger protein 611 isoform a [Homo sapiens] 28 2.1
gi|239787082 zinc finger protein 611 isoform a [Homo sapiens] 28 2.1
gi|239787080 zinc finger protein 611 isoform a [Homo sapiens] 28 2.1
gi|7705383 calpain 9 isoform 2 [Homo sapiens] 27 2.7
gi|5729758 calpain 9 isoform 1 [Homo sapiens] 27 2.7
gi|240255483 sulfatase 2 isoform a precursor [Homo sapiens] 27 2.7
gi|240255478 sulfatase 2 isoform b precursor [Homo sapiens] 27 2.7
gi|29789100 sulfatase 2 isoform a precursor [Homo sapiens] 27 2.7
gi|37537684 zinc finger protein 92 isoform 1 [Homo sapiens] 27 2.7
gi|23097323 zinc finger protein 92 isoform 2 [Homo sapiens] 27 2.7
gi|209954795 zinc finger protein 761 [Homo sapiens] 27 3.6
gi|215490104 calpain 11 [Homo sapiens] 27 3.6
gi|110349778 zinc finger protein 273 [Homo sapiens] 27 3.6
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 27 4.6
gi|111548668 zinc finger protein 676 [Homo sapiens] 27 4.6
gi|5453980 DnaJ (Hsp40) homolog, subfamily C, member 3 [Homo sap... 26 6.1
gi|239757212 PREDICTED: similar to hCG1773661 [Homo sapiens] 26 6.1
gi|239751718 PREDICTED: similar to hCG1773661 [Homo sapiens] 26 6.1
gi|239746221 PREDICTED: hypothetical protein XP_002343677 [Homo ... 26 6.1
gi|215982794 myosin VA isoform 2 [Homo sapiens] 26 6.1
>gi|4758790 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
Length = 106
Score = 231 bits (589), Expect = 1e-61
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60
MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY
Sbjct: 1 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP 106
DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP 106
>gi|169212344 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
sapiens]
Length = 106
Score = 198 bits (504), Expect = 7e-52
Identities = 92/106 (86%), Positives = 97/106 (91%)
Query: 1 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60
MPFL IQKRFGLNID+W TIQS EQPYK+A RCHAFEKEWIECA+GI RAEKECKIE
Sbjct: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP 106
DDFVECLLRQKTMRRAGTIRKQ+DKLIKEGKYTPPPHHIGK EP+P
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
>gi|169211738 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
sapiens]
Length = 106
Score = 198 bits (504), Expect = 7e-52
Identities = 92/106 (86%), Positives = 97/106 (91%)
Query: 1 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60
MPFL IQKRFGLNID+W TIQS EQPYK+A RCHAFEKEWIECA+GI RAEKECKIE
Sbjct: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP 106
DDFVECLLRQKTMRRAGTIRKQ+DKLIKEGKYTPPPHHIGK EP+P
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
>gi|169211073 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
sapiens]
Length = 106
Score = 198 bits (504), Expect = 7e-52
Identities = 92/106 (86%), Positives = 97/106 (91%)
Query: 1 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60
MPFL IQKRFGLNID+W TIQS EQPYK+A RCHAFEKEWIECA+GI RAEKECKIE
Sbjct: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP 106
DDFVECLLRQKTMRRAGTIRKQ+DKLIKEGKYTPPPHHIGK EP+P
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
>gi|239752823 PREDICTED: similar to NADH dehydrogenase [ubiquinone]
iron-sulfur protein 5 [Homo sapiens]
Length = 203
Score = 172 bits (435), Expect = 7e-44
Identities = 79/105 (75%), Positives = 86/105 (81%)
Query: 1 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60
MPFLD+QKRFGLN D WLTIQS EQPYK+ R H FEKEW ECAHGIG EKEC+IEY
Sbjct: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPR 105
D F+EC+L QK MR TIRKQ +KLIKEGKYTPPPHH+GKGEPR
Sbjct: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105
>gi|239747390 PREDICTED: hypothetical protein XP_002346575 [Homo
sapiens]
Length = 203
Score = 172 bits (435), Expect = 7e-44
Identities = 79/105 (75%), Positives = 86/105 (81%)
Query: 1 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60
MPFLD+QKRFGLN D WLTIQS EQPYK+ R H FEKEW ECAHGIG EKEC+IEY
Sbjct: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPR 105
D F+EC+L QK MR TIRKQ +KLIKEGKYTPPPHH+GKGEPR
Sbjct: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105
>gi|239741215 PREDICTED: hypothetical protein XP_002342136 [Homo
sapiens]
Length = 203
Score = 172 bits (435), Expect = 7e-44
Identities = 79/105 (75%), Positives = 86/105 (81%)
Query: 1 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60
MPFLD+QKRFGLN D WLTIQS EQPYK+ R H FEKEW ECAHGIG EKEC+IEY
Sbjct: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPR 105
D F+EC+L QK MR TIRKQ +KLIKEGKYTPPPHH+GKGEPR
Sbjct: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105
>gi|19923193 heat shock 70kD protein binding protein [Homo sapiens]
Length = 369
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 25 QPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTMR-------RAG 77
QPYK G+ H W E AH + CK++YD+ +L++ R R
Sbjct: 183 QPYKWRGKAHRLLGHWEEAAHDLALA-----CKLDYDEDASAMLKEVQPRAQKIAEHRRK 237
Query: 78 TIRKQRDKLIKE 89
RK+ ++ IKE
Sbjct: 238 YERKREEREIKE 249
>gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo
sapiens]
Length = 90
Score = 33.5 bits (75), Expect = 0.038
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 23 GEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTM 73
G P G C +F++++++C H + A C+ E +++EC + +K M
Sbjct: 20 GSFPLDHLGECKSFKEKFMKCLHNNNFENA--LCRKESKEYLECRMERKLM 68
>gi|239787086 zinc finger protein 611 isoform b [Homo sapiens]
Length = 636
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 8 KRFGLNIDRWL--TIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEK--ECKI 58
K FG N D + +I +GEQPYK F ++ H IG+T EK +CK+
Sbjct: 420 KTFGQNSDLLIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHT-GEKPYKCKV 473
>gi|239787084 zinc finger protein 611 isoform a [Homo sapiens]
Length = 705
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 8 KRFGLNIDRWL--TIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEK--ECKI 58
K FG N D + +I +GEQPYK F ++ H IG+T EK +CK+
Sbjct: 489 KTFGQNSDLLIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHT-GEKPYKCKV 542
>gi|239787082 zinc finger protein 611 isoform a [Homo sapiens]
Length = 705
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 8 KRFGLNIDRWL--TIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEK--ECKI 58
K FG N D + +I +GEQPYK F ++ H IG+T EK +CK+
Sbjct: 489 KTFGQNSDLLIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHT-GEKPYKCKV 542
>gi|239787080 zinc finger protein 611 isoform a [Homo sapiens]
Length = 705
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 8 KRFGLNIDRWL--TIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEK--ECKI 58
K FG N D + +I +GEQPYK F ++ H IG+T EK +CK+
Sbjct: 489 KTFGQNSDLLIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHT-GEKPYKCKV 542
>gi|7705383 calpain 9 isoform 2 [Homo sapiens]
Length = 664
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 52 AEKECKIEYDDFVECLLRQKTMRR 75
A++E ++++DDF+ CL+R + R
Sbjct: 614 ADEELQLDFDDFLNCLVRLENASR 637
>gi|5729758 calpain 9 isoform 1 [Homo sapiens]
Length = 690
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 52 AEKECKIEYDDFVECLLRQKTMRR 75
A++E ++++DDF+ CL+R + R
Sbjct: 640 ADEELQLDFDDFLNCLVRLENASR 663
>gi|240255483 sulfatase 2 isoform a precursor [Homo sapiens]
Length = 870
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 22 SGEQPYKMAGRCHAFEKEWIECAHGIGYT-RAEKECKIEYDDFVECLLRQ-KTMRRA-GT 78
S P K+ RC+ E + ++C + + +A K+ K+ D +E L + K +R G
Sbjct: 592 SAANPIKVTHRCYILENDTVQCDLDLYKSLQAWKDHKLHIDHEIETLQNKIKNLREVRGH 651
Query: 79 IRKQRDKLIKEGKYTPPPHHIGK 101
++K+R + K + H G+
Sbjct: 652 LKKKRPEECDCHKISYHTQHKGR 674
>gi|240255478 sulfatase 2 isoform b precursor [Homo sapiens]
Length = 867
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 22 SGEQPYKMAGRCHAFEKEWIECAHGIGYT-RAEKECKIEYDDFVECLLRQ-KTMRRA-GT 78
S P K+ RC+ E + ++C + + +A K+ K+ D +E L + K +R G
Sbjct: 592 SAANPIKVTHRCYILENDTVQCDLDLYKSLQAWKDHKLHIDHEIETLQNKIKNLREVRGH 651
Query: 79 IRKQRDKLIKEGKYTPPPHHIGK 101
++K+R + K + H G+
Sbjct: 652 LKKKRPEECDCHKISYHTQHKGR 674
>gi|29789100 sulfatase 2 isoform a precursor [Homo sapiens]
Length = 870
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 22 SGEQPYKMAGRCHAFEKEWIECAHGIGYT-RAEKECKIEYDDFVECLLRQ-KTMRRA-GT 78
S P K+ RC+ E + ++C + + +A K+ K+ D +E L + K +R G
Sbjct: 592 SAANPIKVTHRCYILENDTVQCDLDLYKSLQAWKDHKLHIDHEIETLQNKIKNLREVRGH 651
Query: 79 IRKQRDKLIKEGKYTPPPHHIGK 101
++K+R + K + H G+
Sbjct: 652 LKKKRPEECDCHKISYHTQHKGR 674
>gi|37537684 zinc finger protein 92 isoform 1 [Homo sapiens]
Length = 517
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 20 IQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIE 59
I +GE+PYK AF K H I YT EK CK E
Sbjct: 461 IYTGEKPYKYEECDKAFNKFSTLITHQIIYT-GEKPCKHE 499
>gi|23097323 zinc finger protein 92 isoform 2 [Homo sapiens]
Length = 586
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 20 IQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIE 59
I +GE+PYK AF K H I YT EK CK E
Sbjct: 530 IYTGEKPYKYEECDKAFNKFSTLITHQIIYT-GEKPCKHE 568
>gi|209954795 zinc finger protein 761 [Homo sapiens]
Length = 746
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 9 RFGLNIDRWLTIQSGEQPYKMAGRCHAF-EKEWIECAH 45
RF N++R I +GE+PYK F K ++ C H
Sbjct: 476 RFKSNLERHRRIHTGEKPYKCNECGKTFSRKSYLTCHH 513
>gi|215490104 calpain 11 [Homo sapiens]
Length = 739
Score = 26.9 bits (58), Expect = 3.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 52 AEKECKIEYDDFVECLLRQKTM 73
A+ + I++D F+ C LR KTM
Sbjct: 689 ADDDLIIDFDSFISCFLRLKTM 710
>gi|110349778 zinc finger protein 273 [Homo sapiens]
Length = 569
Score = 26.9 bits (58), Expect = 3.6
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 20 IQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTMRRAGTI 79
I +GE+PYK AF + H I +T EK K E EC K +R+ T+
Sbjct: 367 IHTGEKPYKCEECGKAFNQSSTLTRHKIVHT-GEKPYKCE-----EC---GKAFKRSTTL 417
Query: 80 RKQRDKLIKEGKY 92
K + KE Y
Sbjct: 418 TKHKRIYTKEKPY 430
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 39 EWIECAHGIGYTRAEKECKIEYD 61
E+ AH GYT + K C ++YD
Sbjct: 950 EYRVTAHAEGYTPSAKTCNVDYD 972
>gi|111548668 zinc finger protein 676 [Homo sapiens]
Length = 588
Score = 26.6 bits (57), Expect = 4.6
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 19 TIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTMRRAGT 78
+I +GE+PYK AF K I H + +T EK K E EC K R+
Sbjct: 189 SIHTGEKPYKCEECGKAFSKFSILTKHKVIHT-GEKPYKCE-----EC---GKAFNRSSI 239
Query: 79 IRKQRDKLIKEGKYTPPPHHIGKG 102
+ K K+I G+ GKG
Sbjct: 240 LTKH--KIIHTGEKPYKCEECGKG 261
>gi|5453980 DnaJ (Hsp40) homolog, subfamily C, member 3 [Homo
sapiens]
Length = 504
Score = 26.2 bits (56), Expect = 6.1
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 54 KECKIEYDDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYT 93
+EC D C K +++ + + ++LI++G+YT
Sbjct: 246 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 285
>gi|239757212 PREDICTED: similar to hCG1773661 [Homo sapiens]
Length = 1119
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 13 NIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAH 45
++ R TI +GE+PYK C K +I+C++
Sbjct: 1041 HLTRHKTIHTGEKPYK----CEECGKAFIQCSY 1069
>gi|239751718 PREDICTED: similar to hCG1773661 [Homo sapiens]
Length = 1119
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 13 NIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAH 45
++ R TI +GE+PYK C K +I+C++
Sbjct: 1041 HLTRHKTIHTGEKPYK----CEECGKAFIQCSY 1069
>gi|239746221 PREDICTED: hypothetical protein XP_002343677 [Homo
sapiens]
Length = 1119
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 13 NIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAH 45
++ R TI +GE+PYK C K +I+C++
Sbjct: 1041 HLTRHKTIHTGEKPYK----CEECGKAFIQCSY 1069
>gi|215982794 myosin VA isoform 2 [Homo sapiens]
Length = 1828
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 20 IQSGEQPYKMA-GRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTMRRAGT 78
+Q E+ K+A GR + ++E + + TR+EK+C E+ D +Q+T +
Sbjct: 971 LQLSEEEAKVATGRVLSLQEEIAKLRKDLEQTRSEKKCIEEHAD----RYKQETEQLVSN 1026
Query: 79 IRKQRDKLIKEGK 91
+ K+ + L+K+ K
Sbjct: 1027 L-KEENTLLKQEK 1038
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.141 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,023,095
Number of Sequences: 37866
Number of extensions: 212541
Number of successful extensions: 798
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 72
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.