Guide to the Human Genome
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Name: LOC100130794 Sequence: fasta or formatted (106aa) NCBI GI: 169211073
Description:

PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)

Not currently referenced in the text

Other entries for this name:
alt mRNA {106aa} PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protei...
alt mRNA {106aa} PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protei...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5          8           2
 C cysteine            3.8          4           1
 D aspartate           3.8          4           2
 E glutamate          10.4         11           2
 F phenylalanine       3.8          4           1
 G glycine             4.7          5           1
 H histidine           2.8          3           2
 I isoleucine         10.4         11           1
 K lysine             10.4         11           1
 L leucine             4.7          5           2
 M methionine          1.9          2           1
 N asparagine          0.9          1           1
 P proline             6.6          7           3
 Q glutamine           7.5          8           2
 R arginine            6.6          7           2
 S serine              2.8          3           1
 T threonine           3.8          4           1
 V valine              1.9          2           1
 W tryptophan          2.8          3           2
 Y tyrosine            2.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to NADH dehydrogenase (ubiquinon... 
LOC100130794          1.000   PREDICTED: similar to NADH dehydrogenase (ubiquinon...
LOC100130794          1.000   PREDICTED: similar to NADH dehydrogenase (ubiquinon...
NDUFS5                0.856   NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa...
LOC100293439          0.668   PREDICTED: similar to NADH dehydrogenase [ubiquinon...
LOC100291390          0.668   PREDICTED: hypothetical protein XP_002346575 
LOC100286918          0.668   PREDICTED: hypothetical protein XP_002342136 
ST13                  0.025   heat shock 70kD protein binding protein 
SULF2                 0.025   sulfatase 2 isoform a precursor 
SULF2                 0.025   sulfatase 2 isoform b precursor 
SULF2                 0.025   sulfatase 2 isoform a precursor 
DNAJC3                0.010   DnaJ (Hsp40) homolog, subfamily C, member 3 
KRT39                 0.005   type I hair keratin KA35 
ZNF827                0.005   zinc finger protein 827 
KIAA1712              0.005   HBV PreS1-transactivated protein 3 isoform b 
KIAA1712              0.005   HBV PreS1-transactivated protein 3 isoform a 
LAMA3                 0.005   laminin alpha 3 subunit isoform 1 
LAMA3                 0.005   laminin alpha 3 subunit isoform 4 
LAMA3                 0.005   laminin alpha 3 subunit isoform 3 
LAMA3                 0.005   laminin alpha 3 subunit isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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