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Search of human proteins with 4758556
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758556 PRP3 pre-mRNA processing factor 3 homolog [Homo
sapiens]
(683 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758556 PRP3 pre-mRNA processing factor 3 homolog [Homo sapiens] 1349 0.0
gi|221139926 NHS-like 1 [Homo sapiens] 44 4e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 43 0.001
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 42 0.002
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 41 0.004
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 41 0.004
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 41 0.004
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 41 0.004
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 41 0.004
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 41 0.004
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 41 0.004
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 41 0.004
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 40 0.005
gi|7661950 SH2 domain binding protein 1 [Homo sapiens] 40 0.009
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 39 0.016
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 37 0.079
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 37 0.079
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ... 36 0.10
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens] 36 0.10
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 36 0.13
gi|224591430 Ly1 antibody reactive homolog [Homo sapiens] 36 0.13
gi|8923398 Ly1 antibody reactive homolog [Homo sapiens] 36 0.13
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 36 0.13
gi|224589132 hypothetical protein LOC100132406 [Homo sapiens] 35 0.30
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 35 0.30
gi|39930351 dynamin binding protein [Homo sapiens] 35 0.30
gi|71061468 centromere protein E [Homo sapiens] 35 0.30
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 35 0.30
gi|112821690 G protein-regulated inducer of neurite outgrowth 3 ... 35 0.30
gi|239741309 PREDICTED: hypothetical protein XP_002344485 [Homo ... 34 0.39
>gi|4758556 PRP3 pre-mRNA processing factor 3 homolog [Homo sapiens]
Length = 683
Score = 1349 bits (3492), Expect = 0.0
Identities = 683/683 (100%), Positives = 683/683 (100%)
Query: 1 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL 60
MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL
Sbjct: 1 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL 60
Query: 61 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE 120
RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE
Sbjct: 61 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE 120
Query: 121 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER 180
EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER
Sbjct: 121 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER 180
Query: 181 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI 240
LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI
Sbjct: 181 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI 240
Query: 241 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK 300
APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK
Sbjct: 241 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK 300
Query: 301 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR 360
PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR
Sbjct: 301 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR 360
Query: 361 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH 420
KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH
Sbjct: 361 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH 420
Query: 421 PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISN 480
PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISN
Sbjct: 421 PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISN 480
Query: 481 LMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQG 540
LMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQG
Sbjct: 481 LMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQG 540
Query: 541 VHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLH 600
VHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLH
Sbjct: 541 VHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLH 600
Query: 601 RIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREH 660
RIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREH
Sbjct: 601 RIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREH 660
Query: 661 FKKHGAEHYWDLALSESVLESTD 683
FKKHGAEHYWDLALSESVLESTD
Sbjct: 661 FKKHGAEHYWDLALSESVLESTD 683
>gi|221139926 NHS-like 1 [Homo sapiens]
Length = 1606
Score = 44.3 bits (103), Expect = 4e-04
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 74 RSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPSES 133
RS R S +SSD + LK+ D+ ++ + K PRF+ EP P P ES
Sbjct: 1407 RSIRKSSTSSDNFKALLLKKGSRSDTSARMSAAEMLKNTDPRFQRSRSEPS--PDAP-ES 1463
Query: 134 PGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPERLPIGNTIQPS 190
P + + ++ E + + LSF P + +TP S+ R + N IQ S
Sbjct: 1464 PSSCSPSKNRRAQEEWAKNEGLMPRSLSFSGPRYGRSRTPPSAASSRYSMRNRIQSS 1520
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 42.7 bits (99), Expect = 0.001
Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 11/187 (5%)
Query: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVG-KGMDKKKAADHLKPFLDDSTLR 61
+SK L+ +KPWI K V +LGF + V+ N + K D K +L FL+ R
Sbjct: 40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAR 99
Query: 62 -FVDKLFEAVEEGRSS-RHSKSSSDRSRKRELKEVFGDDSEIS---KESSGVKKRRIPRF 116
F+ +L+ + + + S+ +K E+K+ + +++ K+ KR
Sbjct: 100 EFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEK 159
Query: 117 EEVEEEPEVIPGP-----PSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPK 171
E E+ E P S SP + ++ + +R R K S P + K
Sbjct: 160 ESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEK 219
Query: 172 TPSSSQP 178
TP +P
Sbjct: 220 TPELPEP 226
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 41.6 bits (96), Expect = 0.002
Identities = 104/520 (20%), Positives = 190/520 (36%), Gaps = 56/520 (10%)
Query: 71 EEGRSSRHSKSSSDRSRKRELKEVFGDDSE----ISKESSGVKKRRIPRFEEVEEEPEVI 126
EEG ++ + ++ +E + E + +E+ + + P EE + EV
Sbjct: 486 EEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVK 545
Query: 127 PGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTP------QPKTPSSSQ-PE 179
++SP K + K EA + + EE K SP + K+P+ ++ PE
Sbjct: 546 SPEKAKSPA---KEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPE 602
Query: 180 RLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMG 239
+ + A + E+A+ AE+++ +A+ K A
Sbjct: 603 KAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEE----------AKSPEKA 652
Query: 240 IAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPT-LKANIR--AVKREQFKQQ 296
+P K E K K + E ++ + ++ + P K+ ++ A E+ K
Sbjct: 653 KSPEKEEAKSPEKAKSPVKAE-AKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSP 711
Query: 297 LKE--KPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAE 354
+KE K E +S + + + K +K K + A+ L K+ K A+
Sbjct: 712 VKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAK 771
Query: 355 ISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGI 414
+ AR + A K+E+K + + + P +E PK+E+
Sbjct: 772 --EEARSPADKFPEK-AKSPVKEEVKSPEKAKSPLKEDAKAPE-----KEIPKKEEVKSP 823
Query: 415 TNLVEHPAQLN---PPVDNDTPVTLGVYLT--KKEQKKLRRQTRREAQKELQEKVRLGLM 469
E P ++ PP + T KK+ KK + + +++EK +
Sbjct: 824 VKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVE 883
Query: 470 PPPEPKVRISNLMRVLGTEAVQDPTKV-----EAHVRAQMAKRQKAHEEANAARKLTAEQ 524
P E KV E +D KV EA + ++ + K E+ A+K +
Sbjct: 884 KPKESKVEAKK-------EEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKK-EPDD 935
Query: 525 RKVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIEANA 564
K K+ K E + P +K K EA A
Sbjct: 936 AKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKA 975
Score = 30.4 bits (67), Expect = 5.7
Identities = 59/254 (23%), Positives = 98/254 (38%), Gaps = 36/254 (14%)
Query: 69 AVEEGRSSRHSKSSSDRSR-KRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIP 127
A EE RS +S K E+K S + KE + ++ IP+ EEV+ P
Sbjct: 770 AKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPL-KEDAKAPEKEIPKKEEVKS-----P 823
Query: 128 GPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPERLPIGNTI 187
E P ++++K+ + A EE K +P TP+ + S+ E P
Sbjct: 824 VKEEEKP---QEVKVKEPPKKA----EEEK------APATPKTEEKKDSKKEEAPKKEAP 870
Query: 188 QPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVEL 247
+P + A+EK +++ + +A+ K AP KVE+
Sbjct: 871 KP-KVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKE-------------APAKVEV 916
Query: 248 KDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMES 307
K+ KP + DA KE + K E+ K+ +EKP + ++
Sbjct: 917 KEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKP-EEKPKTEAKA 975
Query: 308 NTFFDPRVSIAPSQ 321
D +S PS+
Sbjct: 976 KE-DDKTLSKEPSK 988
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 40.8 bits (94), Expect = 0.004
Identities = 101/518 (19%), Positives = 206/518 (39%), Gaps = 68/518 (13%)
Query: 68 EAVEEGRSSRHSKSSSD---------RSRKRELKEVFGDDSEISKESSGVKKRRIPRFEE 118
E + GR R+ + S+D R R+ +++ + DS+ +E ++ + EE
Sbjct: 1201 ELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALL---EE 1257
Query: 119 VEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQP 178
+E E + E K I + + Q+ K QL ++ P +PK S S+
Sbjct: 1258 IERHGEKV-----EECQRFAKQYINAIKDYEL-QLVTYKAQLEPVASPAKKPKVQSGSES 1311
Query: 179 ---ERLPIGN-----TIQPSQAATFMNDAI----EKARKAAELQARIQAQLALKPGLIGN 226
E + + T SQ F+++ + E+ R A + +A + +LA +
Sbjct: 1312 VIQEYVDLRTHYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEK 1371
Query: 227 ANMVGLANLHAMGIAPPKVELKD-QTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANI 285
LA HA A + E K+ Q + ++ + VDA ++ + + L+ +
Sbjct: 1372 QRQ--LAEAHAQAKAQAEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSS 1429
Query: 286 RAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFH-------------DK 332
A + + +Q + S R+ + ++RQR + K
Sbjct: 1430 EAEIQAKARQAEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQK 1489
Query: 333 GKFEKIAQRLRTKAQLE---KLQAEISQAARKTGIHTSTR--------LALIAPKKELKE 381
+ ++ A+RLR + Q E K QAE+ A+R + R L + + E E
Sbjct: 1490 RQAQEEAERLRRQVQDESQRKRQAEVELASRVKAEAEAAREKQRALQALEELRLQAEEAE 1549
Query: 382 GDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLT 441
+ + E + + + + + + E + E AQL + + +
Sbjct: 1550 RRLRQAEVERARQVQVALETAQRSAEAELQSKRASFAEKTAQLERSLQEEHVAVAQL--- 1606
Query: 442 KKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVR 501
+E+ + R Q + EA++ +E R + + K + +R+ E Q + +A
Sbjct: 1607 -REEAERRAQQQAEAERAREEAERE--LERWQLKANEALRLRLQAEEVAQQKSLAQAE-- 1661
Query: 502 AQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQ 539
A++QK E A R+ AE++ V++ + ++++ +
Sbjct: 1662 ---AEKQKEEAEREARRRGKAEEQAVRQRELAEQELEK 1696
Score = 30.8 bits (68), Expect = 4.3
Identities = 65/382 (17%), Positives = 147/382 (38%), Gaps = 40/382 (10%)
Query: 202 KARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILD-- 259
+ R+ AE ++ Q QLA + + HA + + EL+ + +LD
Sbjct: 2023 RLRERAEQESARQLQLAQEAA---QKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQL 2079
Query: 260 ----EQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRV 315
E R +E + ++ + + E+ KQ +E+ ++ +
Sbjct: 2080 RGEAEAARRAAEEAEEARVQAEREAAQSRRQVEEAERLKQSAEEQAQARAQAQAAAEKLR 2139
Query: 316 SIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAP 375
A + RR + + + Q+ A++EK + Q R+ L
Sbjct: 2140 KEAEQEAARRA-----QAEQAALRQKQAADAEMEKHKKFAEQTLRQKA---QVEQELTTL 2191
Query: 376 KKELKEGDIPEIEWWDSYIIPNGFDLTEENPKR----EDYFGITNLVEHPAQLNPPVDND 431
+ +L+E D + D + + TE +R E+ F + +E ++L ++ +
Sbjct: 2192 RLQLEETDHQK-NLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2250
Query: 432 TPVTLGVYLTKKEQKKLRRQTRREAQKEL-QEKVRLGLMPPPEPKVR------------I 478
+ L K+ + Q E K++ +E RL + ++R +
Sbjct: 2251 NRALI---LRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRAL 2307
Query: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
+ M +AVQ+ T+++A A++ ++QK + A R +++ +++ + +
Sbjct: 2308 AEKMLKEKMQAVQEATRLKA--EAELLQQQKELAQEQARRLQEDKEQMAQQLAEETQGFQ 2365
Query: 539 QGVHISVYRVRNLSNPAKKFKI 560
+ + R +S A++ K+
Sbjct: 2366 RTLEAERQRQLEMSAEAERLKL 2387
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 40.8 bits (94), Expect = 0.004
Identities = 101/518 (19%), Positives = 206/518 (39%), Gaps = 68/518 (13%)
Query: 68 EAVEEGRSSRHSKSSSD---------RSRKRELKEVFGDDSEISKESSGVKKRRIPRFEE 118
E + GR R+ + S+D R R+ +++ + DS+ +E ++ + EE
Sbjct: 1205 ELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALL---EE 1261
Query: 119 VEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQP 178
+E E + E K I + + Q+ K QL ++ P +PK S S+
Sbjct: 1262 IERHGEKV-----EECQRFAKQYINAIKDYEL-QLVTYKAQLEPVASPAKKPKVQSGSES 1315
Query: 179 ---ERLPIGN-----TIQPSQAATFMNDAI----EKARKAAELQARIQAQLALKPGLIGN 226
E + + T SQ F+++ + E+ R A + +A + +LA +
Sbjct: 1316 VIQEYVDLRTHYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEK 1375
Query: 227 ANMVGLANLHAMGIAPPKVELKD-QTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANI 285
LA HA A + E K+ Q + ++ + VDA ++ + + L+ +
Sbjct: 1376 QRQ--LAEAHAQAKAQAEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSS 1433
Query: 286 RAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFH-------------DK 332
A + + +Q + S R+ + ++RQR + K
Sbjct: 1434 EAEIQAKARQAEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQK 1493
Query: 333 GKFEKIAQRLRTKAQLE---KLQAEISQAARKTGIHTSTR--------LALIAPKKELKE 381
+ ++ A+RLR + Q E K QAE+ A+R + R L + + E E
Sbjct: 1494 RQAQEEAERLRRQVQDESQRKRQAEVELASRVKAEAEAAREKQRALQALEELRLQAEEAE 1553
Query: 382 GDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLT 441
+ + E + + + + + + E + E AQL + + +
Sbjct: 1554 RRLRQAEVERARQVQVALETAQRSAEAELQSKRASFAEKTAQLERSLQEEHVAVAQL--- 1610
Query: 442 KKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVR 501
+E+ + R Q + EA++ +E R + + K + +R+ E Q + +A
Sbjct: 1611 -REEAERRAQQQAEAERAREEAERE--LERWQLKANEALRLRLQAEEVAQQKSLAQAE-- 1665
Query: 502 AQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQ 539
A++QK E A R+ AE++ V++ + ++++ +
Sbjct: 1666 ---AEKQKEEAEREARRRGKAEEQAVRQRELAEQELEK 1700
Score = 30.8 bits (68), Expect = 4.3
Identities = 65/382 (17%), Positives = 147/382 (38%), Gaps = 40/382 (10%)
Query: 202 KARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILD-- 259
+ R+ AE ++ Q QLA + + HA + + EL+ + +LD
Sbjct: 2027 RLRERAEQESARQLQLAQEAA---QKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQL 2083
Query: 260 ----EQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRV 315
E R +E + ++ + + E+ KQ +E+ ++ +
Sbjct: 2084 RGEAEAARRAAEEAEEARVQAEREAAQSRRQVEEAERLKQSAEEQAQARAQAQAAAEKLR 2143
Query: 316 SIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAP 375
A + RR + + + Q+ A++EK + Q R+ L
Sbjct: 2144 KEAEQEAARRA-----QAEQAALRQKQAADAEMEKHKKFAEQTLRQKA---QVEQELTTL 2195
Query: 376 KKELKEGDIPEIEWWDSYIIPNGFDLTEENPKR----EDYFGITNLVEHPAQLNPPVDND 431
+ +L+E D + D + + TE +R E+ F + +E ++L ++ +
Sbjct: 2196 RLQLEETDHQK-NLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2254
Query: 432 TPVTLGVYLTKKEQKKLRRQTRREAQKEL-QEKVRLGLMPPPEPKVR------------I 478
+ L K+ + Q E K++ +E RL + ++R +
Sbjct: 2255 NRALI---LRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRAL 2311
Query: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
+ M +AVQ+ T+++A A++ ++QK + A R +++ +++ + +
Sbjct: 2312 AEKMLKEKMQAVQEATRLKA--EAELLQQQKELAQEQARRLQEDKEQMAQQLAEETQGFQ 2369
Query: 539 QGVHISVYRVRNLSNPAKKFKI 560
+ + R +S A++ K+
Sbjct: 2370 RTLEAERQRQLEMSAEAERLKL 2391
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 40.8 bits (94), Expect = 0.004
Identities = 101/518 (19%), Positives = 206/518 (39%), Gaps = 68/518 (13%)
Query: 68 EAVEEGRSSRHSKSSSD---------RSRKRELKEVFGDDSEISKESSGVKKRRIPRFEE 118
E + GR R+ + S+D R R+ +++ + DS+ +E ++ + EE
Sbjct: 1201 ELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALL---EE 1257
Query: 119 VEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQP 178
+E E + E K I + + Q+ K QL ++ P +PK S S+
Sbjct: 1258 IERHGEKV-----EECQRFAKQYINAIKDYEL-QLVTYKAQLEPVASPAKKPKVQSGSES 1311
Query: 179 ---ERLPIGN-----TIQPSQAATFMNDAI----EKARKAAELQARIQAQLALKPGLIGN 226
E + + T SQ F+++ + E+ R A + +A + +LA +
Sbjct: 1312 VIQEYVDLRTHYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEK 1371
Query: 227 ANMVGLANLHAMGIAPPKVELKD-QTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANI 285
LA HA A + E K+ Q + ++ + VDA ++ + + L+ +
Sbjct: 1372 QRQ--LAEAHAQAKAQAEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSS 1429
Query: 286 RAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFH-------------DK 332
A + + +Q + S R+ + ++RQR + K
Sbjct: 1430 EAEIQAKARQAEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQK 1489
Query: 333 GKFEKIAQRLRTKAQLE---KLQAEISQAARKTGIHTSTR--------LALIAPKKELKE 381
+ ++ A+RLR + Q E K QAE+ A+R + R L + + E E
Sbjct: 1490 RQAQEEAERLRRQVQDESQRKRQAEVELASRVKAEAEAAREKQRALQALEELRLQAEEAE 1549
Query: 382 GDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLT 441
+ + E + + + + + + E + E AQL + + +
Sbjct: 1550 RRLRQAEVERARQVQVALETAQRSAEAELQSKRASFAEKTAQLERSLQEEHVAVAQL--- 1606
Query: 442 KKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVR 501
+E+ + R Q + EA++ +E R + + K + +R+ E Q + +A
Sbjct: 1607 -REEAERRAQQQAEAERAREEAERE--LERWQLKANEALRLRLQAEEVAQQKSLAQAE-- 1661
Query: 502 AQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQ 539
A++QK E A R+ AE++ V++ + ++++ +
Sbjct: 1662 ---AEKQKEEAEREARRRGKAEEQAVRQRELAEQELEK 1696
Score = 30.8 bits (68), Expect = 4.3
Identities = 65/382 (17%), Positives = 147/382 (38%), Gaps = 40/382 (10%)
Query: 202 KARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILD-- 259
+ R+ AE ++ Q QLA + + HA + + EL+ + +LD
Sbjct: 2023 RLRERAEQESARQLQLAQEAA---QKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQL 2079
Query: 260 ----EQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRV 315
E R +E + ++ + + E+ KQ +E+ ++ +
Sbjct: 2080 RGEAEAARRAAEEAEEARVQAEREAAQSRRQVEEAERLKQSAEEQAQARAQAQAAAEKLR 2139
Query: 316 SIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAP 375
A + RR + + + Q+ A++EK + Q R+ L
Sbjct: 2140 KEAEQEAARRA-----QAEQAALRQKQAADAEMEKHKKFAEQTLRQKA---QVEQELTTL 2191
Query: 376 KKELKEGDIPEIEWWDSYIIPNGFDLTEENPKR----EDYFGITNLVEHPAQLNPPVDND 431
+ +L+E D + D + + TE +R E+ F + +E ++L ++ +
Sbjct: 2192 RLQLEETDHQK-NLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2250
Query: 432 TPVTLGVYLTKKEQKKLRRQTRREAQKEL-QEKVRLGLMPPPEPKVR------------I 478
+ L K+ + Q E K++ +E RL + ++R +
Sbjct: 2251 NRALI---LRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRAL 2307
Query: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
+ M +AVQ+ T+++A A++ ++QK + A R +++ +++ + +
Sbjct: 2308 AEKMLKEKMQAVQEATRLKA--EAELLQQQKELAQEQARRLQEDKEQMAQQLAEETQGFQ 2365
Query: 539 QGVHISVYRVRNLSNPAKKFKI 560
+ + R +S A++ K+
Sbjct: 2366 RTLEAERQRQLEMSAEAERLKL 2387
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 40.8 bits (94), Expect = 0.004
Identities = 101/518 (19%), Positives = 206/518 (39%), Gaps = 68/518 (13%)
Query: 68 EAVEEGRSSRHSKSSSD---------RSRKRELKEVFGDDSEISKESSGVKKRRIPRFEE 118
E + GR R+ + S+D R R+ +++ + DS+ +E ++ + EE
Sbjct: 1169 ELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALL---EE 1225
Query: 119 VEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQP 178
+E E + E K I + + Q+ K QL ++ P +PK S S+
Sbjct: 1226 IERHGEKV-----EECQRFAKQYINAIKDYEL-QLVTYKAQLEPVASPAKKPKVQSGSES 1279
Query: 179 ---ERLPIGN-----TIQPSQAATFMNDAI----EKARKAAELQARIQAQLALKPGLIGN 226
E + + T SQ F+++ + E+ R A + +A + +LA +
Sbjct: 1280 VIQEYVDLRTHYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEK 1339
Query: 227 ANMVGLANLHAMGIAPPKVELKD-QTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANI 285
LA HA A + E K+ Q + ++ + VDA ++ + + L+ +
Sbjct: 1340 QRQ--LAEAHAQAKAQAEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSS 1397
Query: 286 RAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFH-------------DK 332
A + + +Q + S R+ + ++RQR + K
Sbjct: 1398 EAEIQAKARQAEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQK 1457
Query: 333 GKFEKIAQRLRTKAQLE---KLQAEISQAARKTGIHTSTR--------LALIAPKKELKE 381
+ ++ A+RLR + Q E K QAE+ A+R + R L + + E E
Sbjct: 1458 RQAQEEAERLRRQVQDESQRKRQAEVELASRVKAEAEAAREKQRALQALEELRLQAEEAE 1517
Query: 382 GDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLT 441
+ + E + + + + + + E + E AQL + + +
Sbjct: 1518 RRLRQAEVERARQVQVALETAQRSAEAELQSKRASFAEKTAQLERSLQEEHVAVAQL--- 1574
Query: 442 KKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVR 501
+E+ + R Q + EA++ +E R + + K + +R+ E Q + +A
Sbjct: 1575 -REEAERRAQQQAEAERAREEAERE--LERWQLKANEALRLRLQAEEVAQQKSLAQAE-- 1629
Query: 502 AQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQ 539
A++QK E A R+ AE++ V++ + ++++ +
Sbjct: 1630 ---AEKQKEEAEREARRRGKAEEQAVRQRELAEQELEK 1664
Score = 30.8 bits (68), Expect = 4.3
Identities = 65/382 (17%), Positives = 147/382 (38%), Gaps = 40/382 (10%)
Query: 202 KARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILD-- 259
+ R+ AE ++ Q QLA + + HA + + EL+ + +LD
Sbjct: 1991 RLRERAEQESARQLQLAQEAA---QKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQL 2047
Query: 260 ----EQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRV 315
E R +E + ++ + + E+ KQ +E+ ++ +
Sbjct: 2048 RGEAEAARRAAEEAEEARVQAEREAAQSRRQVEEAERLKQSAEEQAQARAQAQAAAEKLR 2107
Query: 316 SIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAP 375
A + RR + + + Q+ A++EK + Q R+ L
Sbjct: 2108 KEAEQEAARRA-----QAEQAALRQKQAADAEMEKHKKFAEQTLRQKA---QVEQELTTL 2159
Query: 376 KKELKEGDIPEIEWWDSYIIPNGFDLTEENPKR----EDYFGITNLVEHPAQLNPPVDND 431
+ +L+E D + D + + TE +R E+ F + +E ++L ++ +
Sbjct: 2160 RLQLEETDHQK-NLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2218
Query: 432 TPVTLGVYLTKKEQKKLRRQTRREAQKEL-QEKVRLGLMPPPEPKVR------------I 478
+ L K+ + Q E K++ +E RL + ++R +
Sbjct: 2219 NRALI---LRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRAL 2275
Query: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
+ M +AVQ+ T+++A A++ ++QK + A R +++ +++ + +
Sbjct: 2276 AEKMLKEKMQAVQEATRLKA--EAELLQQQKELAQEQARRLQEDKEQMAQQLAEETQGFQ 2333
Query: 539 QGVHISVYRVRNLSNPAKKFKI 560
+ + R +S A++ K+
Sbjct: 2334 RTLEAERQRQLEMSAEAERLKL 2355
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 40.8 bits (94), Expect = 0.004
Identities = 101/518 (19%), Positives = 206/518 (39%), Gaps = 68/518 (13%)
Query: 68 EAVEEGRSSRHSKSSSD---------RSRKRELKEVFGDDSEISKESSGVKKRRIPRFEE 118
E + GR R+ + S+D R R+ +++ + DS+ +E ++ + EE
Sbjct: 1338 ELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALL---EE 1394
Query: 119 VEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQP 178
+E E + E K I + + Q+ K QL ++ P +PK S S+
Sbjct: 1395 IERHGEKV-----EECQRFAKQYINAIKDYEL-QLVTYKAQLEPVASPAKKPKVQSGSES 1448
Query: 179 ---ERLPIGN-----TIQPSQAATFMNDAI----EKARKAAELQARIQAQLALKPGLIGN 226
E + + T SQ F+++ + E+ R A + +A + +LA +
Sbjct: 1449 VIQEYVDLRTHYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEK 1508
Query: 227 ANMVGLANLHAMGIAPPKVELKD-QTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANI 285
LA HA A + E K+ Q + ++ + VDA ++ + + L+ +
Sbjct: 1509 QRQ--LAEAHAQAKAQAEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSS 1566
Query: 286 RAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFH-------------DK 332
A + + +Q + S R+ + ++RQR + K
Sbjct: 1567 EAEIQAKARQAEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQK 1626
Query: 333 GKFEKIAQRLRTKAQLE---KLQAEISQAARKTGIHTSTR--------LALIAPKKELKE 381
+ ++ A+RLR + Q E K QAE+ A+R + R L + + E E
Sbjct: 1627 RQAQEEAERLRRQVQDESQRKRQAEVELASRVKAEAEAAREKQRALQALEELRLQAEEAE 1686
Query: 382 GDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLT 441
+ + E + + + + + + E + E AQL + + +
Sbjct: 1687 RRLRQAEVERARQVQVALETAQRSAEAELQSKRASFAEKTAQLERSLQEEHVAVAQL--- 1743
Query: 442 KKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVR 501
+E+ + R Q + EA++ +E R + + K + +R+ E Q + +A
Sbjct: 1744 -REEAERRAQQQAEAERAREEAERE--LERWQLKANEALRLRLQAEEVAQQKSLAQAE-- 1798
Query: 502 AQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQ 539
A++QK E A R+ AE++ V++ + ++++ +
Sbjct: 1799 ---AEKQKEEAEREARRRGKAEEQAVRQRELAEQELEK 1833
Score = 30.8 bits (68), Expect = 4.3
Identities = 65/382 (17%), Positives = 147/382 (38%), Gaps = 40/382 (10%)
Query: 202 KARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILD-- 259
+ R+ AE ++ Q QLA + + HA + + EL+ + +LD
Sbjct: 2160 RLRERAEQESARQLQLAQEAA---QKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQL 2216
Query: 260 ----EQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRV 315
E R +E + ++ + + E+ KQ +E+ ++ +
Sbjct: 2217 RGEAEAARRAAEEAEEARVQAEREAAQSRRQVEEAERLKQSAEEQAQARAQAQAAAEKLR 2276
Query: 316 SIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAP 375
A + RR + + + Q+ A++EK + Q R+ L
Sbjct: 2277 KEAEQEAARRA-----QAEQAALRQKQAADAEMEKHKKFAEQTLRQKA---QVEQELTTL 2328
Query: 376 KKELKEGDIPEIEWWDSYIIPNGFDLTEENPKR----EDYFGITNLVEHPAQLNPPVDND 431
+ +L+E D + D + + TE +R E+ F + +E ++L ++ +
Sbjct: 2329 RLQLEETDHQK-NLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2387
Query: 432 TPVTLGVYLTKKEQKKLRRQTRREAQKEL-QEKVRLGLMPPPEPKVR------------I 478
+ L K+ + Q E K++ +E RL + ++R +
Sbjct: 2388 NRALI---LRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRAL 2444
Query: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
+ M +AVQ+ T+++A A++ ++QK + A R +++ +++ + +
Sbjct: 2445 AEKMLKEKMQAVQEATRLKA--EAELLQQQKELAQEQARRLQEDKEQMAQQLAEETQGFQ 2502
Query: 539 QGVHISVYRVRNLSNPAKKFKI 560
+ + R +S A++ K+
Sbjct: 2503 RTLEAERQRQLEMSAEAERLKL 2524
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 40.8 bits (94), Expect = 0.004
Identities = 101/518 (19%), Positives = 206/518 (39%), Gaps = 68/518 (13%)
Query: 68 EAVEEGRSSRHSKSSSD---------RSRKRELKEVFGDDSEISKESSGVKKRRIPRFEE 118
E + GR R+ + S+D R R+ +++ + DS+ +E ++ + EE
Sbjct: 1179 ELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALL---EE 1235
Query: 119 VEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQP 178
+E E + E K I + + Q+ K QL ++ P +PK S S+
Sbjct: 1236 IERHGEKV-----EECQRFAKQYINAIKDYEL-QLVTYKAQLEPVASPAKKPKVQSGSES 1289
Query: 179 ---ERLPIGN-----TIQPSQAATFMNDAI----EKARKAAELQARIQAQLALKPGLIGN 226
E + + T SQ F+++ + E+ R A + +A + +LA +
Sbjct: 1290 VIQEYVDLRTHYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEK 1349
Query: 227 ANMVGLANLHAMGIAPPKVELKD-QTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANI 285
LA HA A + E K+ Q + ++ + VDA ++ + + L+ +
Sbjct: 1350 QRQ--LAEAHAQAKAQAEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSS 1407
Query: 286 RAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFH-------------DK 332
A + + +Q + S R+ + ++RQR + K
Sbjct: 1408 EAEIQAKARQAEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQK 1467
Query: 333 GKFEKIAQRLRTKAQLE---KLQAEISQAARKTGIHTSTR--------LALIAPKKELKE 381
+ ++ A+RLR + Q E K QAE+ A+R + R L + + E E
Sbjct: 1468 RQAQEEAERLRRQVQDESQRKRQAEVELASRVKAEAEAAREKQRALQALEELRLQAEEAE 1527
Query: 382 GDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLT 441
+ + E + + + + + + E + E AQL + + +
Sbjct: 1528 RRLRQAEVERARQVQVALETAQRSAEAELQSKRASFAEKTAQLERSLQEEHVAVAQL--- 1584
Query: 442 KKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVR 501
+E+ + R Q + EA++ +E R + + K + +R+ E Q + +A
Sbjct: 1585 -REEAERRAQQQAEAERAREEAERE--LERWQLKANEALRLRLQAEEVAQQKSLAQAE-- 1639
Query: 502 AQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQ 539
A++QK E A R+ AE++ V++ + ++++ +
Sbjct: 1640 ---AEKQKEEAEREARRRGKAEEQAVRQRELAEQELEK 1674
Score = 30.8 bits (68), Expect = 4.3
Identities = 65/382 (17%), Positives = 147/382 (38%), Gaps = 40/382 (10%)
Query: 202 KARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILD-- 259
+ R+ AE ++ Q QLA + + HA + + EL+ + +LD
Sbjct: 2001 RLRERAEQESARQLQLAQEAA---QKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQL 2057
Query: 260 ----EQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRV 315
E R +E + ++ + + E+ KQ +E+ ++ +
Sbjct: 2058 RGEAEAARRAAEEAEEARVQAEREAAQSRRQVEEAERLKQSAEEQAQARAQAQAAAEKLR 2117
Query: 316 SIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAP 375
A + RR + + + Q+ A++EK + Q R+ L
Sbjct: 2118 KEAEQEAARRA-----QAEQAALRQKQAADAEMEKHKKFAEQTLRQKA---QVEQELTTL 2169
Query: 376 KKELKEGDIPEIEWWDSYIIPNGFDLTEENPKR----EDYFGITNLVEHPAQLNPPVDND 431
+ +L+E D + D + + TE +R E+ F + +E ++L ++ +
Sbjct: 2170 RLQLEETDHQK-NLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2228
Query: 432 TPVTLGVYLTKKEQKKLRRQTRREAQKEL-QEKVRLGLMPPPEPKVR------------I 478
+ L K+ + Q E K++ +E RL + ++R +
Sbjct: 2229 NRALI---LRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRAL 2285
Query: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
+ M +AVQ+ T+++A A++ ++QK + A R +++ +++ + +
Sbjct: 2286 AEKMLKEKMQAVQEATRLKA--EAELLQQQKELAQEQARRLQEDKEQMAQQLAEETQGFQ 2343
Query: 539 QGVHISVYRVRNLSNPAKKFKI 560
+ + R +S A++ K+
Sbjct: 2344 RTLEAERQRQLEMSAEAERLKL 2365
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 40.8 bits (94), Expect = 0.004
Identities = 101/518 (19%), Positives = 206/518 (39%), Gaps = 68/518 (13%)
Query: 68 EAVEEGRSSRHSKSSSD---------RSRKRELKEVFGDDSEISKESSGVKKRRIPRFEE 118
E + GR R+ + S+D R R+ +++ + DS+ +E ++ + EE
Sbjct: 1187 ELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALL---EE 1243
Query: 119 VEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQP 178
+E E + E K I + + Q+ K QL ++ P +PK S S+
Sbjct: 1244 IERHGEKV-----EECQRFAKQYINAIKDYEL-QLVTYKAQLEPVASPAKKPKVQSGSES 1297
Query: 179 ---ERLPIGN-----TIQPSQAATFMNDAI----EKARKAAELQARIQAQLALKPGLIGN 226
E + + T SQ F+++ + E+ R A + +A + +LA +
Sbjct: 1298 VIQEYVDLRTHYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEK 1357
Query: 227 ANMVGLANLHAMGIAPPKVELKD-QTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANI 285
LA HA A + E K+ Q + ++ + VDA ++ + + L+ +
Sbjct: 1358 QRQ--LAEAHAQAKAQAEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSS 1415
Query: 286 RAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFH-------------DK 332
A + + +Q + S R+ + ++RQR + K
Sbjct: 1416 EAEIQAKARQAEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQK 1475
Query: 333 GKFEKIAQRLRTKAQLE---KLQAEISQAARKTGIHTSTR--------LALIAPKKELKE 381
+ ++ A+RLR + Q E K QAE+ A+R + R L + + E E
Sbjct: 1476 RQAQEEAERLRRQVQDESQRKRQAEVELASRVKAEAEAAREKQRALQALEELRLQAEEAE 1535
Query: 382 GDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLT 441
+ + E + + + + + + E + E AQL + + +
Sbjct: 1536 RRLRQAEVERARQVQVALETAQRSAEAELQSKRASFAEKTAQLERSLQEEHVAVAQL--- 1592
Query: 442 KKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVR 501
+E+ + R Q + EA++ +E R + + K + +R+ E Q + +A
Sbjct: 1593 -REEAERRAQQQAEAERAREEAERE--LERWQLKANEALRLRLQAEEVAQQKSLAQAE-- 1647
Query: 502 AQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQ 539
A++QK E A R+ AE++ V++ + ++++ +
Sbjct: 1648 ---AEKQKEEAEREARRRGKAEEQAVRQRELAEQELEK 1682
Score = 30.8 bits (68), Expect = 4.3
Identities = 65/382 (17%), Positives = 147/382 (38%), Gaps = 40/382 (10%)
Query: 202 KARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILD-- 259
+ R+ AE ++ Q QLA + + HA + + EL+ + +LD
Sbjct: 2009 RLRERAEQESARQLQLAQEAA---QKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQL 2065
Query: 260 ----EQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRV 315
E R +E + ++ + + E+ KQ +E+ ++ +
Sbjct: 2066 RGEAEAARRAAEEAEEARVQAEREAAQSRRQVEEAERLKQSAEEQAQARAQAQAAAEKLR 2125
Query: 316 SIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAP 375
A + RR + + + Q+ A++EK + Q R+ L
Sbjct: 2126 KEAEQEAARRA-----QAEQAALRQKQAADAEMEKHKKFAEQTLRQKA---QVEQELTTL 2177
Query: 376 KKELKEGDIPEIEWWDSYIIPNGFDLTEENPKR----EDYFGITNLVEHPAQLNPPVDND 431
+ +L+E D + D + + TE +R E+ F + +E ++L ++ +
Sbjct: 2178 RLQLEETDHQK-NLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2236
Query: 432 TPVTLGVYLTKKEQKKLRRQTRREAQKEL-QEKVRLGLMPPPEPKVR------------I 478
+ L K+ + Q E K++ +E RL + ++R +
Sbjct: 2237 NRALI---LRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRAL 2293
Query: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
+ M +AVQ+ T+++A A++ ++QK + A R +++ +++ + +
Sbjct: 2294 AEKMLKEKMQAVQEATRLKA--EAELLQQQKELAQEQARRLQEDKEQMAQQLAEETQGFQ 2351
Query: 539 QGVHISVYRVRNLSNPAKKFKI 560
+ + R +S A++ K+
Sbjct: 2352 RTLEAERQRQLEMSAEAERLKL 2373
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 40.8 bits (94), Expect = 0.004
Identities = 101/518 (19%), Positives = 206/518 (39%), Gaps = 68/518 (13%)
Query: 68 EAVEEGRSSRHSKSSSD---------RSRKRELKEVFGDDSEISKESSGVKKRRIPRFEE 118
E + GR R+ + S+D R R+ +++ + DS+ +E ++ + EE
Sbjct: 1228 ELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAMPLADSQAVREQLRQEQALL---EE 1284
Query: 119 VEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQP 178
+E E + E K I + + Q+ K QL ++ P +PK S S+
Sbjct: 1285 IERHGEKV-----EECQRFAKQYINAIKDYEL-QLVTYKAQLEPVASPAKKPKVQSGSES 1338
Query: 179 ---ERLPIGN-----TIQPSQAATFMNDAI----EKARKAAELQARIQAQLALKPGLIGN 226
E + + T SQ F+++ + E+ R A + +A + +LA +
Sbjct: 1339 VIQEYVDLRTHYSELTTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEK 1398
Query: 227 ANMVGLANLHAMGIAPPKVELKD-QTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANI 285
LA HA A + E K+ Q + ++ + VDA ++ + + L+ +
Sbjct: 1399 QRQ--LAEAHAQAKAQAEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSS 1456
Query: 286 RAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFH-------------DK 332
A + + +Q + S R+ + ++RQR + K
Sbjct: 1457 EAEIQAKARQAEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQK 1516
Query: 333 GKFEKIAQRLRTKAQLE---KLQAEISQAARKTGIHTSTR--------LALIAPKKELKE 381
+ ++ A+RLR + Q E K QAE+ A+R + R L + + E E
Sbjct: 1517 RQAQEEAERLRRQVQDESQRKRQAEVELASRVKAEAEAAREKQRALQALEELRLQAEEAE 1576
Query: 382 GDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLT 441
+ + E + + + + + + E + E AQL + + +
Sbjct: 1577 RRLRQAEVERARQVQVALETAQRSAEAELQSKRASFAEKTAQLERSLQEEHVAVAQL--- 1633
Query: 442 KKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVR 501
+E+ + R Q + EA++ +E R + + K + +R+ E Q + +A
Sbjct: 1634 -REEAERRAQQQAEAERAREEAERE--LERWQLKANEALRLRLQAEEVAQQKSLAQAE-- 1688
Query: 502 AQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQ 539
A++QK E A R+ AE++ V++ + ++++ +
Sbjct: 1689 ---AEKQKEEAEREARRRGKAEEQAVRQRELAEQELEK 1723
Score = 30.8 bits (68), Expect = 4.3
Identities = 65/382 (17%), Positives = 147/382 (38%), Gaps = 40/382 (10%)
Query: 202 KARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILD-- 259
+ R+ AE ++ Q QLA + + HA + + EL+ + +LD
Sbjct: 2050 RLRERAEQESARQLQLAQEAA---QKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLDQL 2106
Query: 260 ----EQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRV 315
E R +E + ++ + + E+ KQ +E+ ++ +
Sbjct: 2107 RGEAEAARRAAEEAEEARVQAEREAAQSRRQVEEAERLKQSAEEQAQARAQAQAAAEKLR 2166
Query: 316 SIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAP 375
A + RR + + + Q+ A++EK + Q R+ L
Sbjct: 2167 KEAEQEAARRA-----QAEQAALRQKQAADAEMEKHKKFAEQTLRQKA---QVEQELTTL 2218
Query: 376 KKELKEGDIPEIEWWDSYIIPNGFDLTEENPKR----EDYFGITNLVEHPAQLNPPVDND 431
+ +L+E D + D + + TE +R E+ F + +E ++L ++ +
Sbjct: 2219 RLQLEETDHQK-NLLDEELQRLKAEATEAARQRSQVEEELFSVRVQMEELSKLKARIEAE 2277
Query: 432 TPVTLGVYLTKKEQKKLRRQTRREAQKEL-QEKVRLGLMPPPEPKVR------------I 478
+ L K+ + Q E K++ +E RL + ++R +
Sbjct: 2278 NRALI---LRDKDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRAL 2334
Query: 479 SNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDIS 538
+ M +AVQ+ T+++A A++ ++QK + A R +++ +++ + +
Sbjct: 2335 AEKMLKEKMQAVQEATRLKA--EAELLQQQKELAQEQARRLQEDKEQMAQQLAEETQGFQ 2392
Query: 539 QGVHISVYRVRNLSNPAKKFKI 560
+ + R +S A++ K+
Sbjct: 2393 RTLEAERQRQLEMSAEAERLKL 2414
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 40.4 bits (93), Expect = 0.005
Identities = 61/270 (22%), Positives = 110/270 (40%), Gaps = 34/270 (12%)
Query: 114 PRFEEV-EEEPEVI------PGPPSESPGMLTKLQIKQMMEAAT---RQIEERKKQLSFI 163
P+ EV +EP V P PP M KLQ ++ T Q +E K+
Sbjct: 174 PKSSEVWRDEPAVATGAASDPAPPGRPQEMGPKLQARETPSLPTPIPLQPKEEPKE---- 229
Query: 164 SPPTPQPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGL 223
P P+P+ S +Q LP T P++ ++ +E A L +I Q PG+
Sbjct: 230 -APAPEPQPGSQAQTSSLP--PTRDPARLVAWVLHRLEMALPQPVLHGKIGEQEPDSPGI 286
Query: 224 IGNANMVGLANLHAMGIAPPKVELKDQTKP-----TPLILDEQG-RTVDATGKEIELTHR 277
V ++ G P + L++ P + QG V A +E + +
Sbjct: 287 CD----VQTISILPGGQVEPDLVLEEVEPPWEDAHQDVSTSPQGTEVVPAYEEENKAVEK 342
Query: 278 MPTLKANIRAVKREQFKQQLKEKPSEDME-SNTFFD----PRVSIAPSQRQ-RRTFKFHD 331
MP + I K ++ +++ +E+ E+ E + D +V + S+ R D
Sbjct: 343 MPRELSRIEEEKEDEEEEEEEEEEEEEEEVTEVLLDSCVVSQVGVGQSEEDGTRPQSTSD 402
Query: 332 KGKFEKIAQRLRTKAQLEKLQAEISQAARK 361
+ +E++ + + +A+ EK + E + A +
Sbjct: 403 QKLWEEVGEEAKKEAE-EKAKEEAEEVAEE 431
>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
Length = 1173
Score = 39.7 bits (91), Expect = 0.009
Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 13/183 (7%)
Query: 5 KRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDST----- 59
K+ L++ ++EKT K +L F+ T T G G + K F++D T
Sbjct: 872 KKLLEQRAQYVEKT-KNILMFTGETEATKEKKRGGGGGRRSKKGGEFDEFVNDDTDDDLP 930
Query: 60 --LRFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFE 117
+ + E+ + R+R K G D + ++ KKRR P+ E
Sbjct: 931 ISKKKKRRKGSGSEQEGEDEEGGERKKKKRRRHPKGEEGSDDDETENGPKPKKRRPPKAE 990
Query: 118 EVEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQ 177
+ + P P P M K++ K ++ ++ +E K +++ P S +
Sbjct: 991 K-----KKAPKPERLPPSMKGKIKSKAIISSSDDSSDEDKLKIADEGHPRNSNSNSDSDE 1045
Query: 178 PER 180
E+
Sbjct: 1046 DEQ 1048
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 38.9 bits (89), Expect = 0.016
Identities = 102/488 (20%), Positives = 172/488 (35%), Gaps = 94/488 (19%)
Query: 64 DKLFEAVEEGRSSRH---SKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE 120
+KL E +E + K S+ S +E + VF ++S+ +K P E E
Sbjct: 594 EKLEEKIEPREPNLEPMVEKQESENSCNKEEEPVF-----TRQDSNRSEKEATPVVHETE 648
Query: 121 EEPEVIPGPPSESPGMLTKLQIK-----QMMEAATRQIEERKKQLSFISPPTPQPKTPSS 175
E P P S G + Q Q + +Q + +++Q + P T P PSS
Sbjct: 649 PESGSQPRPAVLS-GYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQGVLPQTV-PSQPSS 706
Query: 176 SQ---PERLPIGNTIQPS--------------QAATFMNDAIEKARKAAELQARIQAQLA 218
S P P+ +QP ++M+ + R A ++ +
Sbjct: 707 STVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMMSGRPAMDIPPIHPGMIP 766
Query: 219 LKPGLIGNANMVGLANL-------------HAMGIAPPKV----------ELKDQTKPTP 255
KP L+ M G N HA+ ++ P++ E + T P
Sbjct: 767 PKP-LMRRDQMEGSPNSSESFEHIARSARDHAISLSEPRMLWGSDPYPHAEPQQATTPKA 825
Query: 256 LILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRV 315
E R+ A +E ++T + A + F ++ E + S + D R
Sbjct: 826 TEEPEDVRSEAALDQE-QITAAYSVEHNQLEAHPKADFIRESSEAQVQKFLSRSVEDVRP 884
Query: 316 SIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGI-HTSTRLALIA 374
+ Q F+ D Q+ + Q E++ A SQ +RK + H S
Sbjct: 885 HHTDANNQSACFEAPD--------QKTLSAPQEERISAVESQPSRKRSVSHGSNHTQKPD 936
Query: 375 PKKELKEGDIPE-----------IEWWDSYIIPNGFDLTEENPKREDYF--------GIT 415
++ IP+ IE + GF + E PK E + G
Sbjct: 937 EQRSEPSAGIPKVTSRCIDSKEPIERPEEKPKKEGFIRSSEGPKPEKVYKSKSETRWGPR 996
Query: 416 NLVEHPAQLNP-PVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKV--------RL 466
++N PV P+ V KE+++ R++ E +++ EKV +
Sbjct: 997 PSSNRREEVNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTEKVVVKPEKTEKK 1056
Query: 467 GLMPPPEP 474
L PPP P
Sbjct: 1057 DLPPPPPP 1064
Score = 35.0 bits (79), Expect = 0.23
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 27/167 (16%)
Query: 79 SKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRF---------EEVEEEPEVIPGP 129
SK +R ++ KE F SE K K + R+ EEV + P GP
Sbjct: 956 SKEPIERPEEKPKKEGFIRSSEGPKPEKVYKSKSETRWGPRPSSNRREEVNDRPVRRSGP 1015
Query: 130 PSESPGMLTKLQIKQMMEAATRQIEE---------RKKQLSFISPPTPQPKTPSSSQPER 180
+ K + +Q E + E+ K + + PP P P+ P+ QP+
Sbjct: 1016 IKKPVLRDMKEEREQRKEKEGEKAEKVTEKVVVKPEKTEKKDLPPPPPPPQPPAPIQPQS 1075
Query: 181 LPIGNTIQP-------SQAATFMNDAIEKARKAAELQARIQAQLALK 220
+P IQP ++ AT + K E + +Q + A+K
Sbjct: 1076 VP--PPIQPEAEKFPSTETATLAQKPSQDTEKPLEPVSTVQVEPAVK 1120
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 36.6 bits (83), Expect = 0.079
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 9 DELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKK----AADHLKPFLDDSTLRFVD 64
+ LK W+ KT++ + + L V K +K+ D L FL T FV+
Sbjct: 11 EALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQKETQIFVE 70
Query: 65 KLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEE 122
KLF+AV + S S K E + +KK I + EE E++
Sbjct: 71 KLFDAVNTKSYLPPPEQPSSGSLKVEF---------FPHQEKDIKKEEITKEEEREKK 119
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 36.6 bits (83), Expect = 0.079
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 19/136 (13%)
Query: 403 EENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREA--QKEL 460
+E P E L PA PPV P + ++E +L + RR+A Q+E
Sbjct: 560 KEQPPAETPTDAAVLTSPPAPA-PPVTPSKP--MAGTTDREEATRLLAEKRRQAREQRER 616
Query: 461 QEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKL 520
+E+ R L + ++R L R EA RA+ + EE A K
Sbjct: 617 EEQERR-LQAERDKRMREEQLAR-------------EAEARAEREAEARRREEQEAREKA 662
Query: 521 TAEQRKVKKIKKLKED 536
AEQ + ++++K KE+
Sbjct: 663 QAEQEEQERLQKQKEE 678
Score = 32.0 bits (71), Expect = 1.9
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 430 NDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEA 489
+D+P T E+ KL ++ R E K L K + L + K ++
Sbjct: 123 SDSPPTKQEVKKAGERHKLAKERREERAKYLAAKKAVWLEKEEKAKALREKQLQERRRRL 182
Query: 490 VQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKK 529
+ K E RA + +RQ+ E N R A QR VKK
Sbjct: 183 EEQRLKAEQR-RAALEERQRQKLEKNKERYEAAIQRSVKK 221
>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
sapiens]
Length = 2542
Score = 36.2 bits (82), Expect = 0.10
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 69 AVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPG 128
A E R + K ++ RK+E D+ KE+S +P E+ EE E +
Sbjct: 1451 AKREKRKEKRKKKKEEQKRKQE-----EDEENKPKENS-----ELPEDEDEEENDEDVEQ 1500
Query: 129 P-PSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPERLPIGNTI 187
P E P T I +AT KK+ + ++ P+ K + E P + I
Sbjct: 1501 EVPIEPPSATTTTTIGISATSATFTNVFGKKRANVVTTPSTNRKNKKNKTKETPPTAHLI 1560
Query: 188 QPSQAATFMNDAIEK 202
P Q + +K
Sbjct: 1561 LPEQHMSLAQQKADK 1575
>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
Length = 2617
Score = 36.2 bits (82), Expect = 0.10
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 69 AVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPG 128
A E R + K ++ RK+E D+ KE+S +P E+ EE E +
Sbjct: 1451 AKREKRKEKRKKKKEEQKRKQE-----EDEENKPKENS-----ELPEDEDEEENDEDVEQ 1500
Query: 129 P-PSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPERLPIGNTI 187
P E P T I +AT KK+ + ++ P+ K + E P + I
Sbjct: 1501 EVPIEPPSATTTTTIGISATSATFTNVFGKKRANVVTTPSTNRKNKKNKTKETPPTAHLI 1560
Query: 188 QPSQAATFMNDAIEK 202
P Q + +K
Sbjct: 1561 LPEQHMSLAQQKADK 1575
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 35.8 bits (81), Expect = 0.13
Identities = 73/325 (22%), Positives = 117/325 (36%), Gaps = 45/325 (13%)
Query: 74 RSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPSE- 132
R+ R+ K+ + + E +E DD E + G K R P +E +EE E IP E
Sbjct: 262 RADRNLKTEEEEEEEEEEEE---DDEEEEGDDEGQKSREAPILKEFKEEGEEIPRVKPEE 318
Query: 133 --SPGMLTKLQIKQMMEAA---TRQIEERKKQLSFISPPTPQPKTPSSSQPERLPIGNTI 187
T+ Q ++++E TR EE +K + KT S + E I
Sbjct: 319 MMDERPKTRSQEQEVLERGGRFTRSQEEARKSHLARQQQEKEMKTTSPLEEEE----REI 374
Query: 188 QPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVEL 247
+ SQ + + R + R +A L P + PP +
Sbjct: 375 KSSQGLKEKSKSPSPPRLTED---RKKASLVALPEQTASEEE-----------TPPPLLT 420
Query: 248 KDQTKPTP---LILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQL------K 298
K+ + P P L +E+ ++ + + P A+ R + Q QL
Sbjct: 421 KEASSPPPHPQLHSEEEIEPMEGPAPPVLIQLSPPNTDADTRELLVSQHTVQLVGGLSPL 480
Query: 299 EKPSE-DMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQ 357
PS+ ES P S+ P ++ + + E + R + L +I +
Sbjct: 481 SSPSDTKAESPAEKVPEESVLPLVQKSTLADYSAQKDLEPESDR-----SAQPLPLKIEE 535
Query: 358 AARKTGIHTSTRLALIAPKKELKEG 382
A GI T L P E KEG
Sbjct: 536 LALAKGI---TEECLKQPSLEQKEG 557
>gi|224591430 Ly1 antibody reactive homolog [Homo sapiens]
Length = 379
Score = 35.8 bits (81), Expect = 0.13
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 38 VGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEG----RSSRHSKSSSDRSRKRELKE 93
V K D++ P + ST K+ +AVE+ ++ R K + RKRE KE
Sbjct: 146 VNKEQDQRPLHPVANPHAEISTKVPASKVKDAVEQQGEVKKNKRERKEERQKKRKREKKE 205
Query: 94 VFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQ- 152
+ ++ + + + KKR+ + ++E E +P + S G +K + KQ ++A+ +
Sbjct: 206 LKLENHQENSRNQKPKKRKKGQEADLEAGGEEVP-EANGSAGKRSKKK-KQRKDSASEEE 263
Query: 153 ----IEERKKQLSFISPPTPQPKTPSSSQPE 179
+RK++ S + + + K PE
Sbjct: 264 ARVGAGKRKRRHSEVETDSKKKKMKLPEHPE 294
>gi|8923398 Ly1 antibody reactive homolog [Homo sapiens]
Length = 379
Score = 35.8 bits (81), Expect = 0.13
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 38 VGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEG----RSSRHSKSSSDRSRKRELKE 93
V K D++ P + ST K+ +AVE+ ++ R K + RKRE KE
Sbjct: 146 VNKEQDQRPLHPVANPHAEISTKVPASKVKDAVEQQGEVKKNKRERKEERQKKRKREKKE 205
Query: 94 VFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQ- 152
+ ++ + + + KKR+ + ++E E +P + S G +K + KQ ++A+ +
Sbjct: 206 LKLENHQENSRNQKPKKRKKGQEADLEAGGEEVP-EANGSAGKRSKKK-KQRKDSASEEE 263
Query: 153 ----IEERKKQLSFISPPTPQPKTPSSSQPE 179
+RK++ S + + + K PE
Sbjct: 264 ARVGAGKRKRRHSEVETDSKKKKMKLPEHPE 294
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 35.8 bits (81), Expect = 0.13
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 7 ELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKK----AADHLKPFLDDSTLRF 62
++D LK W+ K ++ + + + V K +K+ AD L FL T F
Sbjct: 5 DVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGF 64
Query: 63 VDKLFEAV 70
VDKLFE++
Sbjct: 65 VDKLFESL 72
>gi|224589132 hypothetical protein LOC100132406 [Homo sapiens]
Length = 3628
Score = 34.7 bits (78), Expect = 0.30
Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 16/227 (7%)
Query: 249 DQTKPTPLILDEQGRTVDATGKEIELTHR-MPTLKANIRAVK-REQFKQQLKEKPSE--D 304
D+ + IL G T AT + ++ + + KA + ++ E+ + QL EK + +
Sbjct: 249 DECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRN 308
Query: 305 MESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR---- 360
++ F +Q+++ +K+ + K R + + EKL ++ QA
Sbjct: 309 LKEKCFLTQLSGFLANQQKK--YKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQY 366
Query: 361 KTGIHTSTRLALIAPKKELKEGDIPEI---EWWDSYIIPNGFDLTEENPKREDYFGITNL 417
K +H R L K++L+EG E + + P D ++ +E L
Sbjct: 367 KVLVHAQER-ELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRL 425
Query: 418 VEHPAQ-LNPPVDNDTPVTLGVYLTKKEQK-KLRRQTRREAQKELQE 462
+H Q L+P DND + V + +K QK R+ ++ +KE+ E
Sbjct: 426 AQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPE 472
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 34.7 bits (78), Expect = 0.30
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Query: 68 EAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIP 127
E VEE + K+ K++ +E D+ E SKE++ K + EE EE + P
Sbjct: 512 EKVEEKEEDKAEKTEKKEEEKKDEEEK--DEKEDSKENTKEKDKIDGTAEETEEREQATP 569
Query: 128 ------GPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQP 178
G +T+ + A+ ++ PP P P P S++P
Sbjct: 570 RGRKTANSQGRRKGRITRSMTNEAAAASAAAAAATEEP----PPPLPPPPEPISTEP 622
>gi|39930351 dynamin binding protein [Homo sapiens]
Length = 1577
Score = 34.7 bits (78), Expect = 0.30
Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 38/237 (16%)
Query: 117 EEVEEEPEVIPGPPSESPGMLTKLQI------KQMMEAATRQIEERK--KQLSFISPPTP 168
+++ E + + GP +E +L I K ++ +++ I E++ ++ + PP P
Sbjct: 554 QQLIEFEKSLAGPGTEPDKILRHFSIMDFNSEKDIVRGSSKLITEQELPERRKALRPPPP 613
Query: 169 QPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNAN 228
+P TP S+ P L + ++P+ + +R A + Q A+ P L+ + +
Sbjct: 614 RPCTPVSTSPHLL-VDQNLKPAPPL-----VVRPSRPAPLPPSAQQRTNAVSPKLL-SRH 666
Query: 229 MVGLANLHAMGIAPPKVELKDQTKPTPLIL---DEQGRTVDATGK---EIEL-------- 274
L G L DQT P PL+L +E R +D + E+ L
Sbjct: 667 RPTCETLEKEGPGHMGRSL-DQTSPCPLVLVRIEEMERDLDMYSRAQEELNLMLEEKQDE 725
Query: 275 THRMPTL------KANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRR 325
+ R TL ++NI ++ E QQL+E +S++ P S++ ++R
Sbjct: 726 SSRAETLEDLKFCESNIESLNME--LQQLREMTLLSSQSSSLVAPSGSVSAENPEQR 780
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 34.7 bits (78), Expect = 0.30
Identities = 75/383 (19%), Positives = 141/383 (36%), Gaps = 54/383 (14%)
Query: 7 ELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPF----------LD 56
E D+LK ++ V ++ E + V + +K +HLK ++
Sbjct: 1605 ERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFETQKLNLENIE 1664
Query: 57 DSTLRFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRF 116
+R L E +EE RS + +R R ++E + + KE+ + I R
Sbjct: 1665 TENIRLTQILHENLEEMRSV-----TKERDDLRSVEETLKVERDQLKENL---RETITRD 1716
Query: 117 EEVEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSS 176
E +EE +++ E + KL + ++ T +I +K L + K
Sbjct: 1717 LEKQEELKIVHMHLKEHQETIDKL--RGIVSEKTNEISNMQKDLEHSNDAL---KAQDLK 1771
Query: 177 QPERLPIGNTIQPSQAATF---------MNDAIEKARKA-----AELQARIQAQLALKPG 222
E L I + Q T D + +K A+LQ +IQ A +
Sbjct: 1772 IQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKANEHQ 1831
Query: 223 LIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLK 282
LI V + K ++KDQ+ + E + +E + +
Sbjct: 1832 LITLKKDVNETQKKVSEMEQLKKQIKDQSLTLSKLEIENLNLAQKLHENLEEMKSVMKER 1891
Query: 283 ANIRAVK------REQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFE 336
N+R V+ R+Q K+ L+E + D+E I + R K +
Sbjct: 1892 DNLRRVEETLKLERDQLKESLQETKARDLE----------IQQELKTARMLSKEHKETVD 1941
Query: 337 KIAQRLRTKA-QLEKLQAEISQA 358
K+ +++ K Q+ +Q ++ ++
Sbjct: 1942 KLREKISEKTIQISDIQKDLDKS 1964
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 34.7 bits (78), Expect = 0.30
Identities = 100/532 (18%), Positives = 213/532 (40%), Gaps = 73/532 (13%)
Query: 64 DKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEP 123
+KL + +E +SS+ ++S+ + + +EL++ + + + S +R E V +E
Sbjct: 1584 EKLVKEIESLKSSKIAESTEWQEKHKELQKEYEILLQSYENVSNEAERIQHVVEAVRQEK 1643
Query: 124 EVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPERL-- 181
+ + G + K + ++ ++ A +++EE K+++ + Q + +RL
Sbjct: 1644 QELYGKLRSTEA--NKKETEKQLQEAEQEMEEMKEKMRKFAKSKQQKILELEEENDRLRA 1701
Query: 182 ---PIGNTIQPSQAATF-----MNDAIEKARKAAE-LQARIQAQLALKPGLIGNANMVGL 232
P G+T + M + +E+ + E L + Q+ ++ K L
Sbjct: 1702 EVHPAGDTAKECMETLLSSNASMKEELERVKMEYETLSKKFQSLMSEKDSLSEEVQ---- 1757
Query: 233 ANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQ 292
+LK Q + + ++AT K T+ +I EQ
Sbjct: 1758 -------------DLKHQIEGNV----SKQANLEATEKHDNQTNVTEEGTQSIPGETEEQ 1800
Query: 293 FKQQLKEKP--SEDMESNTFFDPRVSIAPSQRQRRTFKFHDK--GKFEKIAQRLRTKAQL 348
+ +P SE + S +P VS + F HD+ ++I Q A L
Sbjct: 1801 DSLSMSTRPTCSESVPSAKSANPAVS--------KDFSSHDEINNYLQQIDQLKERIAGL 1852
Query: 349 EKLQAEISQAARKTGIHTSTRLALIAPKK-ELK--EGDIPEIEWWDSYIIPNGFDLT--E 403
E+ + + + ++ +T L+ I+ K ELK + ++ ++ + I +T +
Sbjct: 1853 EEEKQKNKEFSQTLENEKNTLLSQISTKDGELKMLQEEVTKMNLLNQQIQEELSRVTKLK 1912
Query: 404 ENPKREDYFGITNLVEHPAQLNPPVDN----DTPVTLGVYLTKKEQKKLRR---QTRREA 456
E + E L+ A+LN + N T + L + E K L++ + E
Sbjct: 1913 ETAEEEKDDLEERLMNQLAELNGSIGNYCQDVTDAQIKNELLESEMKNLKKCVSELEEEK 1972
Query: 457 QKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANA 516
Q+ ++EK ++ E ++R L ++ G A ++P Q ++K E
Sbjct: 1973 QQLVKEKTKV------ESEIRKEYLEKIQG--AQKEPGNKSHAKELQELLKEKQQEVKQL 2024
Query: 517 AR-------KLTAEQRKVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIE 561
+ K++A +R VK ++ ++ + + + I+ + KK + E
Sbjct: 2025 QKDCIRYQEKISALERTVKALEFVQTESQKDLEITKENLAQAVEHRKKAQAE 2076
Score = 30.4 bits (67), Expect = 5.7
Identities = 58/251 (23%), Positives = 93/251 (37%), Gaps = 35/251 (13%)
Query: 139 KLQIKQMMEAATRQIEERKKQLSFISPPTPQ-----PKTPSSSQPERLPI---------- 183
KL K + + + IEE K Q + P PQ K SS E + I
Sbjct: 97 KLHAKAKLTSLNKYIEEMKAQGGTVLPTEPQSEEQLSKHDKSSTEEEMEIEKIKHKLQEK 156
Query: 184 GNTIQPSQAATFMNDAIEKARKAAELQ--ARIQAQLALKPGLIGNANMVGLANLHAMGIA 241
I QA A + A+ + E++ ++ QL K I L+ A A
Sbjct: 157 EELISTLQAQLTQAQAEQPAQSSTEMEEFVMMKQQLQEKEEFISTL-QAQLSQTQAEQAA 215
Query: 242 PPKVELKDQTKPTPLIL--DEQGRTVDATGKEIELTHRMPTLKANIR-----AVKREQFK 294
V KD T + L DE + V E E+ ++ L+ + V R Q
Sbjct: 216 QQVVREKDARFETQVRLHEDELLQLVTQADVETEMQQKLRVLQRKLEEHEESLVGRAQVV 275
Query: 295 QQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAE 354
L+++ + + N SQ+ ++ H+ + +R +K LEK++ E
Sbjct: 276 DLLQQELTAAEQRNQIL--------SQQLQQMEAEHNTLRNTVETEREESKILLEKMELE 327
Query: 355 ISQAARKTGIH 365
+ A RK H
Sbjct: 328 V--AERKLSFH 336
>gi|112821690 G protein-regulated inducer of neurite outgrowth 3
[Homo sapiens]
Length = 776
Score = 34.7 bits (78), Expect = 0.30
Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 33/228 (14%)
Query: 96 GDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGML------TKLQIKQMMEAA 149
GD E S V K + + + ++ P S+ G T I++ E+
Sbjct: 533 GDAREKKPASPQVVKEKESTGTDTSDAKTLLLNPKSQESGGTESAANPTPSPIRKNQEST 592
Query: 150 TRQIEERKKQLSFISPPTPQ-PKTPSSSQ--PERLPIGNTIQPSQAATFMNDAIEKARKA 206
+ + K S P P +P S + P R + +PS+ + F+ + A
Sbjct: 593 LEENRQTKTATSLSLPSDPMGDSSPGSGKKTPSRSVKASPRRPSRVSEFLKEQKLNVTAA 652
Query: 207 AELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVD 266
A AQ+ L PG +G A K++LK + ++ DEQG T +
Sbjct: 653 A-------AQVGLTPG--DKKKQLG---------ADSKLQLKQSKRVRDVVWDEQGMTWE 694
Query: 267 ATGKEIELTHRMPTLKANIRAVKREQFK------QQLKEKPSEDMESN 308
G ++ ++ +++ RE K Q + S D SN
Sbjct: 695 VYGASLDAESLGIAIQNHLQRQIREHEKLIKTQNSQTRRSISSDTSSN 742
>gi|239741309 PREDICTED: hypothetical protein XP_002344485 [Homo
sapiens]
Length = 4621
Score = 34.3 bits (77), Expect = 0.39
Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 16/227 (7%)
Query: 249 DQTKPTPLILDEQGRTVDATGKEIELTHR-MPTLKANIRAVK-REQFKQQLKEKPSE--D 304
D+ + IL G T AT + ++ + + KA + ++ E+ QL EK + +
Sbjct: 249 DECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLHPQLAEKKQQFRN 308
Query: 305 MESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR---- 360
++ F +Q+++ +K+ + K R + + EKL ++ QA
Sbjct: 309 LKERCFVTQLAGFLANQQKK--YKYEECKDLIKSMLRNERQFKEEKLAEQLKQAEELRQY 366
Query: 361 KTGIHTSTRLALIAPKKELKEGDIPEI---EWWDSYIIPNGFDLTEENPKREDYFGITNL 417
K +H R L +++L+EG E + + P+ D ++ +E L
Sbjct: 367 KVLVHAQER-ELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRL 425
Query: 418 VEHPAQ-LNPPVDNDTPVTLGVYLTKKEQK-KLRRQTRREAQKELQE 462
+H Q L+P DND + V L +K QK R+ ++ +KE+ E
Sbjct: 426 AQHLVQKLSPENDNDDDEDVQVELAEKVQKSSAPREMQKAEEKEVPE 472
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,600,847
Number of Sequences: 37866
Number of extensions: 1276080
Number of successful extensions: 6657
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 6259
Number of HSP's gapped (non-prelim): 678
length of query: 683
length of database: 18,247,518
effective HSP length: 109
effective length of query: 574
effective length of database: 14,120,124
effective search space: 8104951176
effective search space used: 8104951176
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.