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Search of human proteins with 4758258
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758258 eukaryotic translation initiation factor 4E binding
protein 1 [Homo sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758258 eukaryotic translation initiation factor 4E binding p... 244 8e-66
gi|4758260 eukaryotic translation initiation factor 4E binding p... 126 3e-30
gi|4503537 eukaryotic translation initiation factor 4E binding p... 101 1e-22
gi|130502140 NEZHA isoform 2 [Homo sapiens] 36 0.007
gi|122937255 NEZHA isoform 1 [Homo sapiens] 36 0.007
gi|22035682 DBF4 homolog B isoform 1 [Homo sapiens] 32 0.082
gi|188497667 trafficking protein, kinesin binding 2 [Homo sapiens] 32 0.11
gi|31543535 R3H domain containing 1 [Homo sapiens] 32 0.14
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 31 0.18
gi|24432032 zinc finger protein 503 [Homo sapiens] 30 0.31
gi|169205253 PREDICTED: hypothetical protein [Homo sapiens] 30 0.53
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 30 0.53
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact... 29 0.70
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 29 0.70
gi|222080070 pleckstrin homology domain-containing family G memb... 29 0.91
gi|222080068 pleckstrin homology domain-containing family G memb... 29 0.91
gi|222080066 pleckstrin homology domain-containing family G memb... 29 0.91
gi|105990514 filamin B, beta (actin binding protein 278) [Homo s... 29 0.91
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 29 0.91
gi|190341074 pyridoxal-dependent decarboxylase domain containing... 29 0.91
gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 ... 29 0.91
gi|157412247 RUN and SH3 domain containing 1 isoform b [Homo sap... 28 1.2
gi|157412245 RUN and SH3 domain containing 1 isoform a [Homo sap... 28 1.2
gi|150417978 platelet glycoprotein Ib alpha polypeptide precurso... 28 1.2
gi|188536004 zinc finger protein 469 [Homo sapiens] 28 1.2
gi|163965366 nascent polypeptide-associated complex alpha subuni... 28 1.2
gi|72198346 B-cell lymphoma protein 2 beta isoform [Homo sapiens] 28 1.5
gi|72198189 B-cell lymphoma protein 2 alpha isoform [Homo sapiens] 28 1.5
gi|11345484 zinc finger, AN1-type domain 3 [Homo sapiens] 28 1.5
gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Hom... 28 1.5
>gi|4758258 eukaryotic translation initiation factor 4E binding
protein 1 [Homo sapiens]
Length = 118
Score = 244 bits (624), Expect = 8e-66
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLM 60
MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLM
Sbjct: 1 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLM 60
Query: 61 ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI 118
ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI
Sbjct: 61 ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMDI 118
>gi|4758260 eukaryotic translation initiation factor 4E binding
protein 2 [Homo sapiens]
Length = 120
Score = 126 bits (317), Expect = 3e-30
Identities = 68/119 (57%), Positives = 85/119 (71%), Gaps = 4/119 (3%)
Query: 2 SGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLME 61
S GS + SRAIP TR V + D QLP DY TTPGGTLFSTTPGGTRIIYDRKFL++
Sbjct: 4 SAGSGHQPSQSRAIP-TRTVAISDAAQLPH-DYCTTPGGTLFSTTPGGTRIIYDRKFLLD 61
Query: 62 CRNSPVTKTPPRDLPTIPGVTSPSS--DEPPMEASQSHLRNSPEDKRAGGEESQFEMDI 118
RNSP+ +TPP LP IPGVTSP + ++ +E + + N+ + K A G+++QFEMDI
Sbjct: 62 RRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGDDAQFEMDI 120
>gi|4503537 eukaryotic translation initiation factor 4E binding
protein 3 [Homo sapiens]
Length = 100
Score = 101 bits (252), Expect = 1e-22
Identities = 50/88 (56%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
Query: 31 PGDYSTTPGGTLFSTTPGGTRIIYDRKFLMECRNSPVTKTPPRDLPTIPGVTSPSSDEPP 90
P YSTTPGGTL++TTPGGTRIIYDRKFL+EC+NSP+ +TPP LP IPGVT+P P
Sbjct: 17 PDCYSTTPGGTLYATTPGGTRIIYDRKFLLECKNSPIARTPPCCLPQIPGVTTP----PT 72
Query: 91 MEASQSHLRNSPEDKRAGGEESQFEMDI 118
S+ E + +++QFEMDI
Sbjct: 73 APLSKLEELKEQETEEEIPDDAQFEMDI 100
>gi|130502140 NEZHA isoform 2 [Homo sapiens]
Length = 1249
Score = 35.8 bits (81), Expect = 0.007
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 26/111 (23%)
Query: 2 SGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLME 61
+G + S +P+R +PATRR S PG + +P TR E
Sbjct: 750 TGPKAASPSPARRVPATRR--------------SPGPGPSQSPRSPKHTR-------PAE 788
Query: 62 CRNSPVTK--TPPRDLPTIPGVTSPSSDEPPMEASQSHL---RNSPEDKRA 107
R +P+T+ TPP D+ ++P + S + P++ S L PE+ A
Sbjct: 789 LRLAPLTRVLTPPHDVDSLPHLRKFSPSQVPVQTRSSILLAEETPPEEPAA 839
>gi|122937255 NEZHA isoform 1 [Homo sapiens]
Length = 1276
Score = 35.8 bits (81), Expect = 0.007
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 26/111 (23%)
Query: 2 SGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLME 61
+G + S +P+R +PATRR S PG + +P TR E
Sbjct: 777 TGPKAASPSPARRVPATRR--------------SPGPGPSQSPRSPKHTR-------PAE 815
Query: 62 CRNSPVTK--TPPRDLPTIPGVTSPSSDEPPMEASQSHL---RNSPEDKRA 107
R +P+T+ TPP D+ ++P + S + P++ S L PE+ A
Sbjct: 816 LRLAPLTRVLTPPHDVDSLPHLRKFSPSQVPVQTRSSILLAEETPPEEPAA 866
>gi|22035682 DBF4 homolog B isoform 1 [Homo sapiens]
Length = 615
Score = 32.3 bits (72), Expect = 0.082
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 8 SQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLMECRNSPV 67
S T RA R DGV PP ++ TL P G+R ++ L C S
Sbjct: 396 SVTQGRAAGQQRWTESLDGVMGPPASHTCVSATTLLPALPKGSR---EQGCLCPCPASFT 452
Query: 68 TKTPPRDLPTIPGVTSPSSDEP 89
L +PG SP+ D P
Sbjct: 453 QSHLVTSLALLPGEWSPAEDMP 474
>gi|188497667 trafficking protein, kinesin binding 2 [Homo sapiens]
Length = 914
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 2 SGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLME 61
S GSS S T + + R+ +G+ + + T FS+T +++ +R +
Sbjct: 700 SSGSSSSNTAVNSPALSYRLSIGESIT------NRRDSTTTFSSTMSLAKLLQERGISAK 753
Query: 62 CRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSP 102
+SP+++ P + LP + S + P S L P
Sbjct: 754 VYHSPISENPLQPLPKSLAIPSTPPNSPSHSPCPSPLPFEP 794
>gi|31543535 R3H domain containing 1 [Homo sapiens]
Length = 1099
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 14 AIPATRRVVLG-DGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLMECRNSPVTKTPP 72
A P+T +L + +PPG P P G+ ++Y N P+T+ P
Sbjct: 464 ASPSTSFFLLPLEAAGIPPGSILINPQTGQPFINPDGSPVVY---------NPPMTQQPV 514
Query: 73 RDLPTIPGVTSPSSDEPPMEASQSHL 98
R +PG P PP + + +H+
Sbjct: 515 RS--QVPGPPQPPLPAPPQQPAANHI 538
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1 [Homo
sapiens]
Length = 2346
Score = 31.2 bits (69), Expect = 0.18
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 5 SSCSQT-PSRAIPATRRVVLGDGVQLPP-GDYSTTPGGTLF----STTPGGTRIIYDRKF 58
SS +Q P+ P ++++L D PP D +F S+TPG I +R
Sbjct: 2088 SSINQNFPASTDPGNKQLLLQDSAVSPPVRDVGMNSPALVFPSSASSTPGSETPIINRAN 2147
Query: 59 LMECRNSPVTKTPPR 73
+ SPV KTPP+
Sbjct: 2148 GLGLDTSPVMKTPPK 2162
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 30.4 bits (67), Expect = 0.31
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 3 GGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGG 49
GGSS S + S T VLG G+ P Y PG T+F P G
Sbjct: 312 GGSSGSSSGSGPSAPTSSSVLGSGLVAPVSPYK--PGQTVFPLPPAG 356
>gi|169205253 PREDICTED: hypothetical protein [Homo sapiens]
Length = 3859
Score = 29.6 bits (65), Expect = 0.53
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 12 SRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLMECRNSPVTKTP 71
S AIP T DG P + T GT+ TP + ++ + +SPV
Sbjct: 196 SAAIPVTP----ADG----PVVHVTPANGTVVPVTPADSPVV-----TVASTDSPVVPVT 242
Query: 72 PRDLPTIPGVTSPSSDEPPMEASQSHLRNSPED 104
P D P +P + SS P + A + P D
Sbjct: 243 PADDPIVPVTPADSSFVPVISADSPFVPVIPAD 275
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 21 VVLGDGVQLP--PGDYSTTPGGTLFSTTPGGTRIIYDRKFLMECRNSPVTKTPPRDLPTI 78
V DG+ +P P D P TP + ++ L+ +SPV P D P +
Sbjct: 1668 VTPADGLVVPVTPADSPIVP------VTPADSPVV-----LVTSADSPVIPVTPADSPVV 1716
Query: 79 PGVTSPSSDEP 89
P VTS +D P
Sbjct: 1717 P-VTSADTDSP 1726
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 14/77 (18%)
Query: 26 GVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLMECRNSPVTKTPPRDLPTIPGVTSPS 85
GV PP D + P + P ++ D +PP D+P + V SP
Sbjct: 183 GVPSPPSDVPSPPSDV--PSPPSDVPLLSD------------VPSPPSDVPLLSDVPSPP 228
Query: 86 SDEPPMEASQSHLRNSP 102
SD P + + L P
Sbjct: 229 SDVPSLPSDVPSLSGVP 245
Score = 28.9 bits (63), Expect = 0.91
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 70 TPPRDLPTIPGVTSPSSDEP 89
+PP D+P + GV SP SD P
Sbjct: 315 SPPSDIPLLSGVPSPPSDVP 334
Score = 28.1 bits (61), Expect = 1.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 70 TPPRDLPTIPGVTSPSSDEP 89
+PP D+P + GV SP SD P
Sbjct: 342 SPPSDVPLLSGVPSPLSDVP 361
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 70 TPPRDLPTIPGVTSPSSDEPPMEASQSHL 98
+P D+P + GV SP SD P + S L
Sbjct: 355 SPLSDVPLLSGVPSPPSDVPSLLMSPHRL 383
>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform a [Homo sapiens]
Length = 6620
Score = 29.3 bits (64), Expect = 0.70
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 5 SSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRI---IYDRKFLME 61
SS S+ A+ TRR+V+ Q G+YS GG S + I +R
Sbjct: 1667 SSSSKVRVEAVGCTRRLVVQQAGQADAGEYSCEAGGQRLSFRLHVAELEPQISER----P 1722
Query: 62 CRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMD 117
CR P+ D+ + +PS+ A+ + L++ E +R+ E+ + D
Sbjct: 1723 CRREPLVVKEHEDIILTATLATPSA------ATVTWLKDGVEIRRSKRHETASQGD 1772
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 SSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFS 44
SS S+ A+ TRR+V+ Q G+YS GG S
Sbjct: 1391 SSSSKVRMEAVGCTRRLVVQQACQADTGEYSCEAGGQRLS 1430
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 5 SSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFS 44
SS S+ A TRR+V+ Q G+YS GG S
Sbjct: 931 SSSSKVCMEATGCTRRLVVQQAGQADAGEYSCEAGGQRLS 970
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 5 SSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPG 39
SS S+ A+ TRR+V+ + Q G+YS G
Sbjct: 1575 SSSSKVRMEAVGCTRRLVVQEAGQADAGEYSCKAG 1609
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 29.3 bits (64), Expect = 0.70
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 5 SSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRI---IYDRKFLME 61
SS S+ A+ TRR+V+ Q G+YS GG S + I +R
Sbjct: 1667 SSSSKVRVEAVGCTRRLVVQQAGQADAGEYSCEAGGQRLSFRLHVAELEPQISER----P 1722
Query: 62 CRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFEMD 117
CR P+ D+ + +PS+ A+ + L++ E +R+ E+ + D
Sbjct: 1723 CRREPLVVKEHEDIILTATLATPSA------ATVTWLKDGVEIRRSKRHETASQGD 1772
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 SSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFS 44
SS S+ A+ TRR+V+ Q G+YS GG S
Sbjct: 1391 SSSSKVRMEAVGCTRRLVVQQACQADTGEYSCEAGGQRLS 1430
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 5 SSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFS 44
SS S+ A TRR+V+ Q G+YS GG S
Sbjct: 931 SSSSKVCMEATGCTRRLVVQQAGQADAGEYSCEAGGQRLS 970
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 5 SSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPG 39
SS S+ A+ TRR+V+ + Q G+YS G
Sbjct: 1575 SSSSKVRMEAVGCTRRLVVQEAGQADAGEYSCKAG 1609
>gi|222080070 pleckstrin homology domain-containing family G member
6 isoform b [Homo sapiens]
Length = 758
Score = 28.9 bits (63), Expect = 0.91
Identities = 33/115 (28%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 2 SGGSSCSQTPSRAIPATRRVVLGD---GVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKF 58
S S+ +TP + VV D L P D S + GTL TP G+R R
Sbjct: 518 SQSSAEGRTPEFSTIIPHLVVTEDTDEDAPLVPDDTSDSGYGTLIPGTPTGSRSPLSRLR 577
Query: 59 LMECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQ 113
R P +L IP P + P S L PE GG Q
Sbjct: 578 QRALRRDPRLTFSTLELRDIPLRPHPPDPQAPQRRSAPEL---PEGILKGGSLPQ 629
>gi|222080068 pleckstrin homology domain-containing family G member
6 isoform a [Homo sapiens]
Length = 790
Score = 28.9 bits (63), Expect = 0.91
Identities = 33/115 (28%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 2 SGGSSCSQTPSRAIPATRRVVLGD---GVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKF 58
S S+ +TP + VV D L P D S + GTL TP G+R R
Sbjct: 550 SQSSAEGRTPEFSTIIPHLVVTEDTDEDAPLVPDDTSDSGYGTLIPGTPTGSRSPLSRLR 609
Query: 59 LMECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQ 113
R P +L IP P + P S L PE GG Q
Sbjct: 610 QRALRRDPRLTFSTLELRDIPLRPHPPDPQAPQRRSAPEL---PEGILKGGSLPQ 661
>gi|222080066 pleckstrin homology domain-containing family G member
6 isoform a [Homo sapiens]
Length = 790
Score = 28.9 bits (63), Expect = 0.91
Identities = 33/115 (28%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 2 SGGSSCSQTPSRAIPATRRVVLGD---GVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKF 58
S S+ +TP + VV D L P D S + GTL TP G+R R
Sbjct: 550 SQSSAEGRTPEFSTIIPHLVVTEDTDEDAPLVPDDTSDSGYGTLIPGTPTGSRSPLSRLR 609
Query: 59 LMECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQ 113
R P +L IP P + P S L PE GG Q
Sbjct: 610 QRALRRDPRLTFSTLELRDIPLRPHPPDPQAPQRRSAPEL---PEGILKGGSLPQ 661
>gi|105990514 filamin B, beta (actin binding protein 278) [Homo
sapiens]
Length = 2602
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 1 MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPG 39
M G +CS TP +AI T VV G GV +P Y G
Sbjct: 700 MDGTYACSYTPVKAIKHTIAVVWG-GVNIPHSPYRVNIG 737
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 40 GTLFSTTPGGTRIIYDRKFLMECRNSPVTKT--------PPRDLPTIPGVTSPSSDEPPM 91
G + PG I D K + +N P T + P+D P P SP+ PP
Sbjct: 1807 GQRVPSAPGQESPIPDPKLMPHMKNEPTTPSWLADIPPWVPKDRPLPPAPLSPAPG-PPT 1865
Query: 92 EASQSH 97
A +SH
Sbjct: 1866 PAPESH 1871
>gi|190341074 pyridoxal-dependent decarboxylase domain containing 1
[Homo sapiens]
Length = 788
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 61 ECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 105
+C + +T P LP +P VT D+P + N P DK
Sbjct: 291 KCDSMTMTPGPWLGLPAVPAVTLYKHDDPALTLVAGLTSNKPTDK 335
>gi|10092601 eukaryotic translation initiation factor 4 gamma, 3
[Homo sapiens]
Length = 1585
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 24 GDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLMECRNSPVTKTPPRDLPTIPGVTS 83
GDGV P S P + T G + YDR+FL++ + P P LP I V
Sbjct: 601 GDGVTFPFKPESWKP-----TDTEGKKQ--YDREFLLDFQFMPACIQKPEGLPPISDVVL 653
Query: 84 PSSDEPPM 91
++P +
Sbjct: 654 DKINQPKL 661
>gi|157412247 RUN and SH3 domain containing 1 isoform b [Homo
sapiens]
Length = 796
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 21 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLMECRNSPVTKTPPRDLPTIPG 80
+V +LPP S +PGG+ S P R + K L +P PPRD P
Sbjct: 344 IVFSPDTELPP---SGSPGGS--SAPP---REVTTFKELRSRSRAPAPPVPPRDPPVGWA 395
Query: 81 VTSPSSDEPPM 91
+ P PP+
Sbjct: 396 LVPPRPPPPPV 406
>gi|157412245 RUN and SH3 domain containing 1 isoform a [Homo
sapiens]
Length = 902
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 21 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLMECRNSPVTKTPPRDLPTIPG 80
+V +LPP S +PGG+ S P R + K L +P PPRD P
Sbjct: 344 IVFSPDTELPP---SGSPGGS--SAPP---REVTTFKELRSRSRAPAPPVPPRDPPVGWA 395
Query: 81 VTSPSSDEPPM 91
+ P PP+
Sbjct: 396 LVPPRPPPPPV 406
>gi|150417978 platelet glycoprotein Ib alpha polypeptide precursor
[Homo sapiens]
Length = 639
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 31 PGDYSTTPGGTLFSTTPGGTRIIYDRKFLMECRNSPVTKTPPRDLPTIPGVTSPSSDEPP 90
P TTP T T I+ L+ +++ +T T P L T P D+PP
Sbjct: 430 PAPSPTTPEPTPIPTIATSPTILVSATSLITPKSTFLTTTKPVSLLESTKKTIPELDQPP 489
Query: 91 --MEASQSHLRNSPED 104
Q HL +S D
Sbjct: 490 KLRGVLQGHLESSRND 505
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 15/78 (19%)
Query: 26 GVQLPPGDYSTTPG---GTLFSTTPGGTRIIYDRKFLMECRNSPVTKTPPRDLPTIPGVT 82
G Q PPGD PG G P G + R F PR+ + GV
Sbjct: 2692 GAQKPPGDRMLCPGRMDGAALGEQPTGQKGASARGF-----------WGPRETKAL-GVC 2739
Query: 83 SPSSDEPPMEASQSHLRN 100
S EP ++S++H R+
Sbjct: 2740 KESGSEPAEDSSRAHSRS 2757
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 67 VTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSP 102
VT P++ PT P VT PS ++ P + SP
Sbjct: 1605 VTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSP 1640
Score = 28.1 bits (61), Expect = 1.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 63 RNSPVTKTPPRDLPTIPGVTSPSSDEPP 90
+ P T + D PT+P VT PS EPP
Sbjct: 1453 KGGPATPSSKGD-PTLPAVTPPSPKEPP 1479
>gi|72198346 B-cell lymphoma protein 2 beta isoform [Homo sapiens]
Length = 205
Score = 28.1 bits (61), Expect = 1.5
Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 24 GDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLMECRNSPVTKTPPRDLPTIPGVTS 83
GD PPG P +FS+ PG T PV +T P P PG +
Sbjct: 33 GDVGAAPPG---AAPAPGIFSSQPGHTPH-------PAASRDPVARTSPLQTPAAPGAAA 82
Query: 84 PSSDEPPMEASQSHLRNSPED 104
+ P LR + +D
Sbjct: 83 GPALSPVPPVVHLTLRQAGDD 103
>gi|72198189 B-cell lymphoma protein 2 alpha isoform [Homo sapiens]
Length = 239
Score = 28.1 bits (61), Expect = 1.5
Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 24 GDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLMECRNSPVTKTPPRDLPTIPGVTS 83
GD PPG P +FS+ PG T PV +T P P PG +
Sbjct: 33 GDVGAAPPG---AAPAPGIFSSQPGHTPH-------PAASRDPVARTSPLQTPAAPGAAA 82
Query: 84 PSSDEPPMEASQSHLRNSPED 104
+ P LR + +D
Sbjct: 83 GPALSPVPPVVHLTLRQAGDD 103
>gi|11345484 zinc finger, AN1-type domain 3 [Homo sapiens]
Length = 227
Score = 28.1 bits (61), Expect = 1.5
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 65 SPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKRAGGEESQFE 115
+P + LPT VTSPS +E +H+ KR+ G +SQ E
Sbjct: 75 TPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCGTDSQSE 125
>gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Homo
sapiens]
Length = 2063
Score = 28.1 bits (61), Expect = 1.5
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 56 RKFLMECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 105
+++++ + V P D+P +P PS++ P EA++ +P K
Sbjct: 1008 KQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPASK 1057
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,682,236
Number of Sequences: 37866
Number of extensions: 387689
Number of successful extensions: 1434
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1275
Number of HSP's gapped (non-prelim): 221
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.