Guide to the Human Genome
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Name: C10orf81 Sequence: fasta or formatted (363aa) NCBI GI: 46391075
Description:

hypothetical protein LOC79949

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.8         10           1
 C cysteine            1.1          4           1
 D aspartate           6.1         22           1
 E glutamate           9.4         34           3
 F phenylalanine       4.4         16           2
 G glycine             5.0         18           1
 H histidine           3.0         11           3
 I isoleucine          5.2         19           2
 K lysine              6.3         23           2
 L leucine             7.7         28           2
 M methionine          1.9          7           1
 N asparagine          3.6         13           2
 P proline             5.2         19           2
 Q glutamine           6.9         25           2
 R arginine            3.3         12           1
 S serine             14.0         51           3
 T threonine           5.5         20           2
 V valine              5.0         18           2
 W tryptophan          0.8          3           1
 Y tyrosine            2.8         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79949 
GAB3                  0.031   Gab3 protein isoform 1 
GAB2                  0.028   GRB2-associated binding protein 2 isoform a 
GAB4                  0.027   GRB2-associated binding protein family, member 4 [Ho...
GAB3                  0.027   Gab3 protein isoform 2 
ITK                   0.023   IL2-inducible T-cell kinase 
DOCK9                 0.017   dedicator of cytokinesis 9 isoform d 
DOCK9                 0.017   dedicator of cytokinesis 9 isoform c 
DOCK9                 0.017   dedicator of cytokinesis 9 isoform b 
DOCK9                 0.017   dedicator of cytokinesis 9 isoform a 
ACIN1                 0.016   apoptotic chromatin condensation inducer 1 
TRIOBP                0.014   TRIO and F-actin binding protein isoform 6 
TRIOBP                0.014   TRIO and F-actin binding protein isoform 2 
TRIOBP                0.014   TRIO and F-actin binding protein isoform 1 
MPRIP                 0.014   myosin phosphatase-Rho interacting protein isoform 2...
MPRIP                 0.014   myosin phosphatase-Rho interacting protein isoform 1...
PHLDB1                0.014   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.014   pleckstrin homology-like domain, family B, member 1 ...
SBF1                  0.014   SET binding factor 1 
PLEKHA1               0.013   pleckstrin homology domain containing, family A (pho...
PLEKHA1               0.013   pleckstrin homology domain containing, family A (pho...
PHLDB1                0.013   pleckstrin homology-like domain, family B, member 1...
MAGEC1                0.011   melanoma antigen family C, 1 
MUC12                 0.011   PREDICTED: mucin 12 
GAB2                  0.010   GRB2-associated binding protein 2 isoform b 
AKAP11                0.010   A-kinase anchor protein 11 
MUC12                 0.010   PREDICTED: mucin 12, cell surface associated 
PHLDB2                0.010   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.010   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.010   pleckstrin homology-like domain, family B, member 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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