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Search of human proteins with 46389560
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46389560 endosulfine alpha isoform 7 [Homo sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46389560 endosulfine alpha isoform 7 [Homo sapiens] 235 5e-63
gi|46389558 endosulfine alpha isoform 6 [Homo sapiens] 235 5e-63
gi|46389556 endosulfine alpha isoform 5 [Homo sapiens] 225 7e-60
gi|46389554 endosulfine alpha isoform 4 [Homo sapiens] 201 1e-52
gi|4758272 endosulfine alpha isoform 3 [Homo sapiens] 201 1e-52
gi|46389552 endosulfine alpha isoform 2 [Homo sapiens] 190 2e-49
gi|46389550 endosulfine alpha isoform 1 [Homo sapiens] 190 2e-49
gi|5729732 cyclic AMP phosphoprotein, 19 kD [Homo sapiens] 164 2e-41
gi|169163530 PREDICTED: similar to endosulfine alpha [Homo sapiens] 142 6e-35
gi|169164492 PREDICTED: similar to hCG2040272 [Homo sapiens] 141 1e-34
gi|169164903 PREDICTED: similar to hCG2040272 [Homo sapiens] 141 1e-34
gi|46389562 endosulfine alpha isoform 8 [Homo sapiens] 88 1e-18
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 30 0.32
gi|27262638 sperm associated antigen 1 [Homo sapiens] 30 0.32
gi|27262636 sperm associated antigen 1 [Homo sapiens] 30 0.32
gi|126032350 protein kinase, DNA-activated, catalytic polypeptid... 30 0.41
gi|13654237 protein kinase, DNA-activated, catalytic polypeptide... 30 0.41
gi|113430845 PREDICTED: similar to protein kinase, DNA-activated... 30 0.41
gi|157785645 SPEG complex locus [Homo sapiens] 30 0.54
gi|6912458 calcineurin binding protein 1 [Homo sapiens] 30 0.54
gi|51317366 myosin XVIIIB [Homo sapiens] 28 1.2
gi|73858566 heparin cofactor II precursor [Homo sapiens] 28 1.6
gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2... 27 2.7
gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1... 27 2.7
gi|42794754 acyl-CoA synthetase long-chain family member 3 [Homo... 27 3.5
gi|42794752 acyl-CoA synthetase long-chain family member 3 [Homo... 27 3.5
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 27 4.6
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 27 4.6
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 27 4.6
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 27 4.6
>gi|46389560 endosulfine alpha isoform 7 [Homo sapiens]
Length = 113
Score = 235 bits (600), Expect = 5e-63
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MAGGLGCDVCYWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKY 60
MAGGLGCDVCYWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKY
Sbjct: 1 MAGGLGCDVCYWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKY 60
Query: 61 FDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
FDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG
Sbjct: 61 FDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
>gi|46389558 endosulfine alpha isoform 6 [Homo sapiens]
Length = 117
Score = 235 bits (600), Expect = 5e-63
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MAGGLGCDVCYWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKY 60
MAGGLGCDVCYWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKY
Sbjct: 1 MAGGLGCDVCYWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKY 60
Query: 61 FDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
FDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG
Sbjct: 61 FDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
>gi|46389556 endosulfine alpha isoform 5 [Homo sapiens]
Length = 133
Score = 225 bits (573), Expect = 7e-60
Identities = 113/129 (87%), Positives = 113/129 (87%), Gaps = 16/129 (12%)
Query: 1 MAGGLGCDVCYWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG--- 57
MAGGLGCDVCYWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG
Sbjct: 1 MAGGLGCDVCYWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYK 60
Query: 58 -------------QKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKS 104
QKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKS
Sbjct: 61 SLHWSVLLCADEMQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKS 120
Query: 105 SLVTSKLAG 113
SLVTSKLAG
Sbjct: 121 SLVTSKLAG 129
>gi|46389554 endosulfine alpha isoform 4 [Homo sapiens]
Length = 117
Score = 201 bits (510), Expect = 1e-52
Identities = 98/99 (98%), Positives = 99/99 (100%)
Query: 15 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK 74
+DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK
Sbjct: 19 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK 78
Query: 75 NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG
Sbjct: 79 NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 117
>gi|4758272 endosulfine alpha isoform 3 [Homo sapiens]
Length = 121
Score = 201 bits (510), Expect = 1e-52
Identities = 98/99 (98%), Positives = 99/99 (100%)
Query: 15 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK 74
+DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK
Sbjct: 19 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK 78
Query: 75 NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG
Sbjct: 79 NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 117
>gi|46389552 endosulfine alpha isoform 2 [Homo sapiens]
Length = 133
Score = 190 bits (483), Expect = 2e-49
Identities = 98/115 (85%), Positives = 99/115 (86%), Gaps = 16/115 (13%)
Query: 15 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG----------------Q 58
+DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG Q
Sbjct: 19 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQ 78
Query: 59 KYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
KYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG
Sbjct: 79 KYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 133
>gi|46389550 endosulfine alpha isoform 1 [Homo sapiens]
Length = 137
Score = 190 bits (483), Expect = 2e-49
Identities = 98/115 (85%), Positives = 99/115 (86%), Gaps = 16/115 (13%)
Query: 15 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG----------------Q 58
+DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG Q
Sbjct: 19 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQ 78
Query: 59 KYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
KYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG
Sbjct: 79 KYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 133
>gi|5729732 cyclic AMP phosphoprotein, 19 kD [Homo sapiens]
Length = 112
Score = 164 bits (414), Expect = 2e-41
Identities = 79/89 (88%), Positives = 82/89 (92%)
Query: 25 PERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSAGPD 84
PE+AEEAKLKA+YP LGQKPGGSDFL KRLQKGQKYFDSGDYNMAKAKMKNKQLP+A PD
Sbjct: 24 PEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDSGDYNMAKAKMKNKQLPTAAPD 83
Query: 85 KNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
K VTGDHIPTPQDLPQRK SLV SKLAG
Sbjct: 84 KTEVTGDHIPTPQDLPQRKPSLVASKLAG 112
>gi|169163530 PREDICTED: similar to endosulfine alpha [Homo sapiens]
Length = 164
Score = 142 bits (358), Expect = 6e-35
Identities = 73/96 (76%), Positives = 82/96 (85%), Gaps = 5/96 (5%)
Query: 18 QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQ 77
Q+KEGIL ER EE KLK+KY SLGQ+PGGS+FLMKRLQKG++YF SGDYNMAKAKMK+KQ
Sbjct: 74 QDKEGILSERVEEPKLKSKYLSLGQEPGGSNFLMKRLQKGKRYFVSGDYNMAKAKMKSKQ 133
Query: 78 LPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
LPSA P KNLVTGDHI LP RKS ++TSKLAG
Sbjct: 134 LPSAEPKKNLVTGDHI-----LPHRKSLVITSKLAG 164
>gi|169164492 PREDICTED: similar to hCG2040272 [Homo sapiens]
Length = 164
Score = 141 bits (355), Expect = 1e-34
Identities = 72/96 (75%), Positives = 82/96 (85%), Gaps = 5/96 (5%)
Query: 18 QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQ 77
Q+KEGIL ER EE KLK+KY +LGQ+PGGS+FLMKRLQKG++YF SGDYNMAKAKMK+KQ
Sbjct: 74 QDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSGDYNMAKAKMKSKQ 133
Query: 78 LPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
LPSA P KNLVTGDHI LP RKS ++TSKLAG
Sbjct: 134 LPSAEPKKNLVTGDHI-----LPHRKSLVITSKLAG 164
>gi|169164903 PREDICTED: similar to hCG2040272 [Homo sapiens]
Length = 164
Score = 141 bits (355), Expect = 1e-34
Identities = 72/96 (75%), Positives = 82/96 (85%), Gaps = 5/96 (5%)
Query: 18 QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQ 77
Q+KEGIL ER EE KLK+KY +LGQ+PGGS+FLMKRLQKG++YF SGDYNMAKAKMK+KQ
Sbjct: 74 QDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSGDYNMAKAKMKSKQ 133
Query: 78 LPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
LPSA P KNLVTGDHI LP RKS ++TSKLAG
Sbjct: 134 LPSAEPKKNLVTGDHI-----LPHRKSLVITSKLAG 164
>gi|46389562 endosulfine alpha isoform 8 [Homo sapiens]
Length = 105
Score = 88.2 bits (217), Expect = 1e-18
Identities = 42/43 (97%), Positives = 43/43 (100%)
Query: 15 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 57
+DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG
Sbjct: 19 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 61
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 50 LMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLV--TGDHIPTPQDLPQ 101
+ +RL++G + F +GDY MA ++ A PD+ L GD + LP+
Sbjct: 23 IAQRLEEGDEAFRAGDYEMAAELFRSMLAGLAQPDRGLCLRLGDALARAGRLPE 76
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 10 CYWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKR-LQKGQKYFDSGDYNM 68
C ED +EK I +++ +K++ + + G DFL R +KG + F+SGDY
Sbjct: 170 CLKIDEDYKEKTVI--DKSHLSKIETRIDTAGLTEKEKDFLATREKEKGNEAFNSGDYEE 227
Query: 69 A 69
A
Sbjct: 228 A 228
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 10 CYWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKR-LQKGQKYFDSGDYNM 68
C ED +EK I +++ +K++ + + G DFL R +KG + F+SGDY
Sbjct: 170 CLKIDEDYKEKTVI--DKSHLSKIETRIDTAGLTEKEKDFLATREKEKGNEAFNSGDYEE 227
Query: 69 A 69
A
Sbjct: 228 A 228
>gi|126032350 protein kinase, DNA-activated, catalytic polypeptide
isoform 2 [Homo sapiens]
Length = 4097
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 13 FVEDTQEKEGILPERAEEAKLKAKYPSLGQ---KPGGSDFLMKRLQKGQKYFD 62
FVE TQ +G L R +E L A++P GQ DF + + G+ FD
Sbjct: 2606 FVE-TQASQGTLQTRTQEGSLSARWPVAGQIRATQQQHDFTLTQTADGRSSFD 2657
>gi|13654237 protein kinase, DNA-activated, catalytic polypeptide
isoform 1 [Homo sapiens]
Length = 4128
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 13 FVEDTQEKEGILPERAEEAKLKAKYPSLGQ---KPGGSDFLMKRLQKGQKYFD 62
FVE TQ +G L R +E L A++P GQ DF + + G+ FD
Sbjct: 2606 FVE-TQASQGTLQTRTQEGSLSARWPVAGQIRATQQQHDFTLTQTADGRSSFD 2657
>gi|113430845 PREDICTED: similar to protein kinase, DNA-activated,
catalytic polypeptide [Homo sapiens]
Length = 4096
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 13 FVEDTQEKEGILPERAEEAKLKAKYPSLGQ---KPGGSDFLMKRLQKGQKYFD 62
FVE TQ +G L R +E L A++P GQ DF + + G+ FD
Sbjct: 2605 FVE-TQASQGTLQTRTQEGSLSARWPVAGQIRATQQQHDFTLTQTADGRSSFD 2656
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 29.6 bits (65), Expect = 0.54
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 16/87 (18%)
Query: 19 EKEGILPERAEEAKLKAKYPSLGQKP-GGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQ 77
+++G P + +EA PS GQ+P G+ L++G
Sbjct: 1974 QEQGRAPSQDQEAPSPEALPSPGQEPAAGASPRRGELRRGSS--------------AESA 2019
Query: 78 LPSAGPDKNLVTGDHIPTPQDLPQRKS 104
LP AGP + L G H +LPQR+S
Sbjct: 2020 LPRAGP-RELGRGLHKAASVELPQRRS 2045
>gi|6912458 calcineurin binding protein 1 [Homo sapiens]
Length = 2220
Score = 29.6 bits (65), Expect = 0.54
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 25 PERAEEAKLKAKYPSL------GQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQL 78
PE +E + K P L G +PGG L+ D+GD + K+K+
Sbjct: 1696 PEDGQEGLPQPKKPPLADGSGPGPEPGGKVGLLNHRPVAM---DAGDSADQSGERKDKES 1752
Query: 79 PSAGPDKNLVTGDHIPTPQDL 99
P AGP + + T + DL
Sbjct: 1753 PRAGPTEPMDTSEATVCHSDL 1773
>gi|51317366 myosin XVIIIB [Homo sapiens]
Length = 2567
Score = 28.5 bits (62), Expect = 1.2
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 15/82 (18%)
Query: 15 EDTQEKEGILPERAEEAKLKAKYPSLGQKP-GGSD--------------FLMKRLQKGQK 59
E Q+K G + ++ EEA+ K + L + P GG+D FL KRLQ+ ++
Sbjct: 1482 EQVQKKLGDVNKQLEEAQQKIQLNDLERNPTGGADEWQMRFDCAQMENEFLRKRLQQCEE 1541
Query: 60 YFDSGDYNMAKAKMKNKQLPSA 81
DS + + K +L SA
Sbjct: 1542 RLDSELTARKELEQKLGELQSA 1563
>gi|73858566 heparin cofactor II precursor [Homo sapiens]
Length = 499
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 45 GGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSAGPD---KNLVTGDHIPTPQD 98
GGS + +L+KG + S D + KN +P D +N VT D IP ++
Sbjct: 19 GGSKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLLPADFHKENTVTNDWIPEGEE 75
>gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2
[Homo sapiens]
Length = 659
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 65 DYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTS 109
D N KA+ +++ S ++ + G+ PTP PQ+ S +S
Sbjct: 448 DSNSLKARPRSRSYSSTSIEEAMKRGEDPPTPPPRPQKTHSRASS 492
>gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1
[Homo sapiens]
Length = 660
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 65 DYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTS 109
D N KA+ +++ S ++ + G+ PTP PQ+ S +S
Sbjct: 449 DSNSLKARPRSRSYSSTSIEEAMKRGEDPPTPPPRPQKTHSRASS 493
>gi|42794754 acyl-CoA synthetase long-chain family member 3 [Homo
sapiens]
Length = 720
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 11 YWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAK 70
Y+F E QEK + + +K + Y S+ G + L K F AK
Sbjct: 42 YFFSESRQEKSNRIKAKPVNSKPDSAYRSVNSLDGLASVLYPGCDTLDKVF-----TYAK 96
Query: 71 AKMKNKQL 78
K KNK+L
Sbjct: 97 NKFKNKRL 104
>gi|42794752 acyl-CoA synthetase long-chain family member 3 [Homo
sapiens]
Length = 720
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 11 YWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAK 70
Y+F E QEK + + +K + Y S+ G + L K F AK
Sbjct: 42 YFFSESRQEKSNRIKAKPVNSKPDSAYRSVNSLDGLASVLYPGCDTLDKVF-----TYAK 96
Query: 71 AKMKNKQL 78
K KNK+L
Sbjct: 97 NKFKNKRL 104
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 30 EAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSAGPDK 85
+ K K SLG + G D + LQKG + GD + K+K + K+ DK
Sbjct: 1322 DVKEKKGKGSLGSQ-GAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDK 1376
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 30 EAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSAGPDK 85
+ K K SLG + G D + LQKG + GD + K+K + K+ DK
Sbjct: 1361 DVKEKKGKGSLGSQ-GAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDK 1415
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 30 EAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSAGPDK 85
+ K K SLG + G D + LQKG + GD + K+K + K+ DK
Sbjct: 1398 DVKEKKGKGSLGSQ-GAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDK 1452
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
sapiens]
Length = 1411
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 30 EAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSAGPDK 85
+ K K SLG + G D + LQKG + GD + K+K + K+ DK
Sbjct: 1321 DVKEKKGKGSLGSQ-GAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDK 1375
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,958,466
Number of Sequences: 37866
Number of extensions: 217245
Number of successful extensions: 417
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 42
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.