Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128203 Sequence: fasta or formatted (164aa) NCBI GI: 169164492
Description:

PREDICTED: similar to hCG2040272

Not currently referenced in the text

Other entries for this name:
alt prot {164aa} PREDICTED: similar to endosulfine alpha
alt mRNA {164aa} PREDICTED: similar to hCG2040272
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          6           1
 C cysteine            1.2          2           1
 D aspartate           4.9          8           1
 E glutamate           8.5         14           2
 F phenylalanine       1.2          2           1
 G glycine            11.0         18           2
 H histidine           3.0          5           1
 I isoleucine          2.4          4           1
 K lysine             12.2         20           2
 L leucine             9.1         15           1
 M methionine          3.7          6           1
 N asparagine          3.0          5           1
 P proline             6.1         10           1
 Q glutamine           4.9          8           2
 R arginine            4.3          7           1
 S serine              6.7         11           1
 T threonine           3.7          6           1
 V valine              5.5          9           2
 W tryptophan          0.6          1           1
 Y tyrosine            4.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040272 
LOC100128203          1.000   PREDICTED: similar to hCG2040272 
LOC100128203          0.994   PREDICTED: similar to endosulfine alpha 
ENSA                  0.375   endosulfine alpha isoform 4 
ENSA                  0.375   endosulfine alpha isoform 3 
ENSA                  0.368   endosulfine alpha isoform 7 
ENSA                  0.368   endosulfine alpha isoform 6 
ENSA                  0.343   endosulfine alpha isoform 2 
ENSA                  0.343   endosulfine alpha isoform 1 
ENSA                  0.333   endosulfine alpha isoform 5 
ARPP19                0.289   cyclic AMP phosphoprotein, 19 kD 
ENSA                  0.137   endosulfine alpha isoform 8 
DHX36                 0.022   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX36                 0.022   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
SMC3                  0.019   structural maintenance of chromosomes 3 
BSN                   0.016   bassoon protein 
SVIL                  0.016   supervillin isoform 2 
GOLGA4                0.013   golgi autoantigen, golgin subfamily a, 4 
LONRF2                0.010   LON peptidase N-terminal domain and ring finger 2 [...
SF3A1                 0.010   splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom...
SF3A1                 0.010   splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo...
ALPK2                 0.010   heart alpha-kinase 
KIAA1217              0.006   sickle tail isoform 3 
KIAA1217              0.006   sickle tail isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press