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Search of human proteins with 46249395
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46249395 Ras-related GTP binding B short isoform [Homo
sapiens]
(346 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46249395 Ras-related GTP binding B short isoform [Homo sapiens] 695 0.0
gi|46249397 Ras-related GTP binding B long isoform [Homo sapiens] 680 0.0
gi|5729999 Ras-related GTP binding A [Homo sapiens] 615 e-176
gi|11034847 Ras-related GTP binding D [Homo sapiens] 86 4e-17
gi|11995472 Ras-related GTP binding C [Homo sapiens] 80 3e-15
gi|5453555 ras-related nuclear protein [Homo sapiens] 42 8e-04
gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens] 41 0.001
gi|4757774 ADP-ribosylation factor-like 3 [Homo sapiens] 41 0.001
gi|13376574 ADP-ribosylation factor-like 14 [Homo sapiens] 40 0.003
gi|74096429 RAB41, member RAS oncogene family [Homo sapiens] 39 0.005
gi|8922601 ADP-ribosylation factor-like 10C [Homo sapiens] 39 0.005
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 39 0.005
gi|222144319 Ras-related protein RAB34 isoform 5 [Homo sapiens] 39 0.007
gi|222144315 Ras-related protein RAB34 isoform 3 [Homo sapiens] 39 0.007
gi|222144311 Ras-related protein RAB34 isoform 1 [Homo sapiens] 39 0.007
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 39 0.009
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 39 0.009
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 39 0.009
gi|6912244 ADP-ribosylation factor-like 5A isoform 1 [Homo sapiens] 39 0.009
gi|15718763 c-K-ras2 protein isoform a precursor [Homo sapiens] 38 0.012
gi|15718761 c-K-ras2 protein isoform b precursor [Homo sapiens] 38 0.012
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 38 0.012
gi|4758996 Ras-related protein Rab-33A [Homo sapiens] 38 0.015
gi|4502205 ADP-ribosylation factor 4 [Homo sapiens] 37 0.020
gi|194363762 v-Ha-ras Harvey rat sarcoma viral oncogene homolog ... 37 0.026
gi|34222246 v-Ha-ras Harvey rat sarcoma viral oncogene homolog i... 37 0.026
gi|4885425 v-Ha-ras Harvey rat sarcoma viral oncogene homolog is... 37 0.026
gi|30520350 ADP-ribosylation factor-like 8 [Homo sapiens] 37 0.026
gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens] 37 0.026
gi|66879664 ADP-ribosylation factor 1 [Homo sapiens] 37 0.034
>gi|46249395 Ras-related GTP binding B short isoform [Homo sapiens]
Length = 346
Score = 695 bits (1793), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MEESDSEKTTEKENLGPRMDPPLGEPEGSLGWVLPNTAMKKKVLLMGKSGSGKTSMRSII 60
MEESDSEKTTEKENLGPRMDPPLGEPEGSLGWVLPNTAMKKKVLLMGKSGSGKTSMRSII
Sbjct: 1 MEESDSEKTTEKENLGPRMDPPLGEPEGSLGWVLPNTAMKKKVLLMGKSGSGKTSMRSII 60
Query: 61 FANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEV 120
FANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEV
Sbjct: 61 FANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEV 120
Query: 121 LIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREED 180
LIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREED
Sbjct: 121 LIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREED 180
Query: 181 LRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFE 240
LRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFE
Sbjct: 181 LRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFE 240
Query: 241 RATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFT 300
RATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFT
Sbjct: 241 RATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFT 300
Query: 301 SNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR 346
SNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR
Sbjct: 301 SNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR 346
>gi|46249397 Ras-related GTP binding B long isoform [Homo sapiens]
Length = 374
Score = 680 bits (1754), Expect = 0.0
Identities = 346/374 (92%), Positives = 346/374 (92%), Gaps = 28/374 (7%)
Query: 1 MEESDSEKTTEKENLGPRMDPPLGEPEGSLGWVLPNTAMKKKVLLMGKSGSGKTSMRSII 60
MEESDSEKTTEKENLGPRMDPPLGEPEGSLGWVLPNTAMKKKVLLMGKSGSGKTSMRSII
Sbjct: 1 MEESDSEKTTEKENLGPRMDPPLGEPEGSLGWVLPNTAMKKKVLLMGKSGSGKTSMRSII 60
Query: 61 FANYIARDTRRLGATI----------------------------DVEHSHVRFLGNLVLN 92
FANYIARDTRRLGATI DVEHSHVRFLGNLVLN
Sbjct: 61 FANYIARDTRRLGATILDRIHSLQINSSLSTYSLVDSVGNTKTFDVEHSHVRFLGNLVLN 120
Query: 93 LWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPD 152
LWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPD
Sbjct: 121 LWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPD 180
Query: 153 AKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQ 212
AKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQ
Sbjct: 181 AKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQ 240
Query: 213 LIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFK 272
LIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFK
Sbjct: 241 LIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFK 300
Query: 273 LSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEK 332
LSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEK
Sbjct: 301 LSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEK 360
Query: 333 LERVDGPKQCLLMR 346
LERVDGPKQCLLMR
Sbjct: 361 LERVDGPKQCLLMR 374
>gi|5729999 Ras-related GTP binding A [Homo sapiens]
Length = 313
Score = 615 bits (1587), Expect = e-176
Identities = 307/313 (98%), Positives = 310/313 (99%)
Query: 34 LPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 93
+PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL
Sbjct: 1 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 60
Query: 94 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 153
WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA
Sbjct: 61 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 120
Query: 154 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQL 213
KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLEC+CFRTSIWDETLYKAWSSIVYQL
Sbjct: 121 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 180
Query: 214 IPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKL 273
IPNVQQLEMNLRNFA+IIEADEVLLFERATFLVISHYQCKEQRD HRFEKISNIIKQFKL
Sbjct: 181 IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL 240
Query: 274 SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 333
SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL
Sbjct: 241 SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 300
Query: 334 ERVDGPKQCLLMR 346
ERVDGPK LLMR
Sbjct: 301 ERVDGPKHSLLMR 313
>gi|11034847 Ras-related GTP binding D [Homo sapiens]
Length = 400
Score = 86.3 bits (212), Expect = 4e-17
Identities = 71/264 (26%), Positives = 124/264 (46%), Gaps = 20/264 (7%)
Query: 2 EESDSEKTTEKENL--------GPRM---DPPLGEPEGSLGWVLP-NTAMKKKVLLMGKS 49
+E D+E+ E++ L GP DP G EG L + P +T +K ++LLMG
Sbjct: 12 DEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSDPFSTEVKPRILLMGLR 71
Query: 50 GSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTS 109
SGK+S++ ++F +T L +T + V + +WD GQ F + F
Sbjct: 72 RSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPTF-- 129
Query: 110 QRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQED- 168
+ IFR LI+V D + +E + + A N+ D +HK+D + +D
Sbjct: 130 DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINFEVFIHKVDGLSDDH 188
Query: 169 ----QRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNL 224
QRD+ + ++ + S + TSI+D ++++A+S +V +LIP + LE L
Sbjct: 189 KIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLL 248
Query: 225 RNFAEIIEADEVLLFERATFLVIS 248
F ++ LF+ + + I+
Sbjct: 249 NIFISNSGIEKAFLFDVVSKIYIA 272
>gi|11995472 Ras-related GTP binding C [Homo sapiens]
Length = 399
Score = 80.1 bits (196), Expect = 3e-15
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 8/214 (3%)
Query: 40 KKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ 99
K ++LLMG SGK+S++ ++F +T L +T + + + +WD GQ
Sbjct: 61 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 120
Query: 100 DTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLV 159
F + F + IFR LIYV D + +E + + +A N PD +
Sbjct: 121 MDFFDPTFDYEM--IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFI 177
Query: 160 HKMDLVQED-----QRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLI 214
HK+D + +D QRD+ + ++ L S + TSI+D ++++A+S +V +LI
Sbjct: 178 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLI 237
Query: 215 PNVQQLEMNLRNFAEIIEADEVLLFERATFLVIS 248
P + LE L F ++ LF+ + + I+
Sbjct: 238 PQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 271
>gi|5453555 ras-related nuclear protein [Homo sapiens]
Length = 216
Score = 42.0 bits (97), Expect = 8e-04
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRF---LGNLVLNLWDCGG 98
K++L+G G+GKT+ + + ++ AT+ VE + F G + N+WD G
Sbjct: 12 KLVLVGDGGTGKTTF---VKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 99 QDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSP 151
Q+ F RD + + I +FDV SR K++ + L + +N P
Sbjct: 69 QEKF-----GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP 116
>gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens]
Length = 229
Score = 41.2 bits (95), Expect = 0.001
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 24 GEPEGSLGWVLPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSH- 82
G G+ G++ P + K++++G S GKT + A R R ATI V+
Sbjct: 17 GAVSGASGFLPPARSRIFKIIVIGDSNVGKTCLTYRFCAG---RFPDRTEATIGVDFRER 73
Query: 83 -VRFLGNLV-LNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDM-HYY 139
V G + + LWD GQ+ F + S + +RNV +++V+D+ + + +
Sbjct: 74 AVEIDGERIKIQLWDTAGQERFRK----SMVQHYYRNVHAVVFVYDMTNMASFHSLPSWI 129
Query: 140 QSCLEAILQN 149
+ C + +L N
Sbjct: 130 EECKQHLLAN 139
>gi|4757774 ADP-ribosylation factor-like 3 [Homo sapiens]
Length = 182
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDT 101
++LL+G +GKT++ + + I+ T G I S LN+WD GGQ
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ-----GFKLNVWDIGGQRK 73
Query: 102 FMENYFTSQRDNIFRNVEVLIYVFDVESRE 131
+ N F N ++LIYV D R+
Sbjct: 74 IRPYW-----KNYFENTDILIYVIDSADRK 98
>gi|13376574 ADP-ribosylation factor-like 14 [Homo sapiens]
Length = 192
Score = 40.0 bits (92), Expect = 0.003
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 28 GSLGWVLPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG 87
GSLG P T + +VLL+G +GK+++ ++ +A+D + TI +
Sbjct: 2 GSLGSKNPQTK-QAQVLLLGLDSAGKSTL---LYKLKLAKDITTI-PTIGFNVEMIELER 56
Query: 88 NLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFD-VESRELEKDMHYYQSCLEAI 146
NL L +WD GGQ+ + N + L+YV D + + LE+ ++ L+
Sbjct: 57 NLSLTVWDVGGQEKMRTVW-----GCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKN- 110
Query: 147 LQNSPDAKIFCLVHKMDL 164
++ + + L +K D+
Sbjct: 111 -EHIKNVPVVLLANKQDM 127
>gi|74096429 RAB41, member RAS oncogene family [Homo sapiens]
Length = 222
Score = 39.3 bits (90), Expect = 0.005
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 40 KKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEH-SHVRFLGNLV--LNLWDC 96
K K+L +G+ GKTS+ S N + AT+ ++ S +L + + L LWD
Sbjct: 31 KSKLLFLGEQSVGKTSIISRFMYNSFGCACQ---ATVGIDFLSKTMYLEDQIVQLQLWDT 87
Query: 97 GGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIF 156
GQ+ F S + R+ + + V+D+ + K+ + + A + D I
Sbjct: 88 AGQER-----FHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRA--ERGDDVVIM 140
Query: 157 CLVHKMDLVQEDQRDLIFKEREEDLRRLS 185
L +K+DL +++R + ++ EE R L+
Sbjct: 141 LLGNKIDL--DNKRQVTAEQGEEKSRNLN 167
>gi|8922601 ADP-ribosylation factor-like 10C [Homo sapiens]
Length = 186
Score = 39.3 bits (90), Expect = 0.005
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDT 101
++ L+G SGKT+ ++I + + D + T+ V GN+ + +WD GGQ
Sbjct: 22 ELTLVGLQYSGKTTFVNVIASGQFSED---MIPTVGFNMRKVT-KGNVTIKIWDIGGQPR 77
Query: 102 FMENYFTSQRDNIFRNVEVLIYVFDVESRE-LEKDMHYYQSCLE-AILQNSPDAKIFCLV 159
F S + R V ++Y+ D RE +E + + L+ LQ P + L
Sbjct: 78 -----FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP---VLVLG 129
Query: 160 HKMDLVQE-DQRDLIFK 175
+K DL D++ LI K
Sbjct: 130 NKRDLPNALDEKQLIEK 146
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 39.3 bits (90), Expect = 0.005
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEH-SHVRFLGN--LVLNLWDCGG 98
K L++G +G+GK+ + N +D+ TI VE S V +G + L +WD G
Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNH---TIGVEFGSRVVNVGGKTVKLQIWDTAG 66
Query: 99 QDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCL 158
Q+ F S + +R + V+D+ SRE + + + +A SP+ +
Sbjct: 67 QERFR-----SVTRSYYRGAAGALLVYDITSRETYNSLAAWLT--DARTLASPNIVVILC 119
Query: 159 VHKMDLVQEDQRDLIFKE 176
+K DL + +R++ F E
Sbjct: 120 GNKKDL--DPEREVTFLE 135
>gi|222144319 Ras-related protein RAB34 isoform 5 [Homo sapiens]
Length = 316
Score = 38.9 bits (89), Expect = 0.007
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 24/144 (16%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDT--RRLGATIDVEHSHVRF--LG-NLVLNLWDC 96
KV+++G GKT + N +DT + ATI V+ RF LG L LWD
Sbjct: 111 KVIVVGDLSVGKTCL-----INRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDT 165
Query: 97 GGQDTFMENYFTSQRDNIFRNVEVLIYVF---DVESRELEKDMHYYQSCLEAILQNSPDA 153
GQ+ F +R + +I VF DV S E H Q +A+ +N P +
Sbjct: 166 AGQER-----FKCIASTYYRGAQAIIIVFNLNDVASLE-----HTKQWLADALKENDPSS 215
Query: 154 KIFCLV-HKMDLVQEDQRDLIFKE 176
+ LV K DL Q L+ K+
Sbjct: 216 VLLFLVGSKKDLSTPAQYALMEKD 239
>gi|222144315 Ras-related protein RAB34 isoform 3 [Homo sapiens]
Length = 268
Score = 38.9 bits (89), Expect = 0.007
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 24/144 (16%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDT--RRLGATIDVEHSHVRF--LG-NLVLNLWDC 96
KV+++G GKT + N +DT + ATI V+ RF LG L LWD
Sbjct: 112 KVIVVGDLSVGKTCL-----INRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDT 166
Query: 97 GGQDTFMENYFTSQRDNIFRNVEVLIYVF---DVESRELEKDMHYYQSCLEAILQNSPDA 153
GQ+ F +R + +I VF DV S E H Q +A+ +N P +
Sbjct: 167 AGQER-----FKCIASTYYRGAQAIIIVFNLNDVASLE-----HTKQWLADALKENDPSS 216
Query: 154 KIFCLV-HKMDLVQEDQRDLIFKE 176
+ LV K DL Q L+ K+
Sbjct: 217 VLLFLVGSKKDLSTPAQYALMEKD 240
>gi|222144311 Ras-related protein RAB34 isoform 1 [Homo sapiens]
Length = 259
Score = 38.9 bits (89), Expect = 0.007
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 24/144 (16%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDT--RRLGATIDVEHSHVRF--LG-NLVLNLWDC 96
KV+++G GKT + N +DT + ATI V+ RF LG L LWD
Sbjct: 54 KVIVVGDLSVGKTCL-----INRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDT 108
Query: 97 GGQDTFMENYFTSQRDNIFRNVEVLIYVF---DVESRELEKDMHYYQSCLEAILQNSPDA 153
GQ+ F +R + +I VF DV S E H Q +A+ +N P +
Sbjct: 109 AGQER-----FKCIASTYYRGAQAIIIVFNLNDVASLE-----HTKQWLADALKENDPSS 158
Query: 154 KIFCLV-HKMDLVQEDQRDLIFKE 176
+ LV K DL Q L+ K+
Sbjct: 159 VLLFLVGSKKDLSTPAQYALMEKD 182
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 38.5 bits (88), Expect = 0.009
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 35 PNTAMKK------KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN 88
P +AM K K+LL+G SG GKT + I FA +T ID + V G
Sbjct: 121 PVSAMAKAYDHLFKLLLIGDSGVGKTCL-IIRFAEDNFNNTYISTIGIDFKIRTVDIEGK 179
Query: 89 LV-LNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAIL 147
+ L +WD GQ+ F + +R +I +D+ EK Q+ +++I+
Sbjct: 180 KIKLQVWDTAGQER-----FKTITTAYYRGAMGIILAYDITD---EKSFENIQNWMKSIM 231
Query: 148 QN-SPDAKIFCLVHKMDL-----VQEDQRDLIFKE 176
+N S + L +K D+ VQ++Q D + +E
Sbjct: 232 ENASAGVEHLLLGNKCDMEAKRKVQKEQADKLARE 266
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 38.5 bits (88), Expect = 0.009
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 35 PNTAMKK------KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN 88
P +AM K K+LL+G SG GKT + I FA +T ID + V G
Sbjct: 121 PVSAMAKAYDHLFKLLLIGDSGVGKTCL-IIRFAEDNFNNTYISTIGIDFKIRTVDIEGK 179
Query: 89 LV-LNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAIL 147
+ L +WD GQ+ F + +R +I +D+ EK Q+ +++I+
Sbjct: 180 KIKLQVWDTAGQER-----FKTITTAYYRGAMGIILAYDITD---EKSFENIQNWMKSIM 231
Query: 148 QN-SPDAKIFCLVHKMDL-----VQEDQRDLIFKE 176
+N S + L +K D+ VQ++Q D + +E
Sbjct: 232 ENASAGVEHLLLGNKCDMEAKRKVQKEQADKLARE 266
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 38.5 bits (88), Expect = 0.009
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 35 PNTAMKK------KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN 88
P +AM K K+LL+G SG GKT + I FA +T ID + V G
Sbjct: 121 PVSAMAKAYDHLFKLLLIGDSGVGKTCL-IIRFAEDNFNNTYISTIGIDFKIRTVDIEGK 179
Query: 89 LV-LNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAIL 147
+ L +WD GQ+ F + +R +I +D+ EK Q+ +++I+
Sbjct: 180 KIKLQVWDTAGQER-----FKTITTAYYRGAMGIILAYDITD---EKSFENIQNWMKSIM 231
Query: 148 QN-SPDAKIFCLVHKMDL-----VQEDQRDLIFKE 176
+N S + L +K D+ VQ++Q D + +E
Sbjct: 232 ENASAGVEHLLLGNKCDMEAKRKVQKEQADKLARE 266
>gi|6912244 ADP-ribosylation factor-like 5A isoform 1 [Homo sapiens]
Length = 179
Score = 38.5 bits (88), Expect = 0.009
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATI-DVEHSHVRFLGNLVLNLWDCGGQD 100
KV+++G +GKT++ N + + +G+ + ++ ++ RFL +WD GGQ+
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFL------MWDIGGQE 71
Query: 101 TFMENYFTSQRDNIFRNVEVLIYVFDVESRE 131
+ ++ T + N E +I V D RE
Sbjct: 72 SLRSSWNT-----YYTNTEFVIVVVDSTDRE 97
>gi|15718763 c-K-ras2 protein isoform a precursor [Homo sapiens]
Length = 189
Score = 38.1 bits (87), Expect = 0.012
Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIA-------RDTRRLGATIDVEHSHVRFLGNLVLNLW 94
K++++G G GK+++ + N+ D+ R ID E +L++
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE--------TCLLDIL 56
Query: 95 DCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAK 154
D GQ+ + ++ RD R E + VF + + + +D+H+Y+ ++ + ++S D
Sbjct: 57 DTAGQEEY-----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV-KDSEDVP 110
Query: 155 IFCLVHKMDL 164
+ + +K DL
Sbjct: 111 MVLVGNKCDL 120
>gi|15718761 c-K-ras2 protein isoform b precursor [Homo sapiens]
Length = 188
Score = 38.1 bits (87), Expect = 0.012
Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIA-------RDTRRLGATIDVEHSHVRFLGNLVLNLW 94
K++++G G GK+++ + N+ D+ R ID E +L++
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE--------TCLLDIL 56
Query: 95 DCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAK 154
D GQ+ + ++ RD R E + VF + + + +D+H+Y+ ++ + ++S D
Sbjct: 57 DTAGQEEY-----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV-KDSEDVP 110
Query: 155 IFCLVHKMDL 164
+ + +K DL
Sbjct: 111 MVLVGNKCDL 120
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 38.1 bits (87), Expect = 0.012
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLV-LNLWDCGGQD 100
K+LL+G SG GKT + I FA +T ID + V G + L +WD GQ+
Sbjct: 10 KLLLIGDSGVGKTCL-IIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 68
Query: 101 TFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQN-SPDAKIFCLV 159
F + +R +I V+D+ EK Q+ +++I +N S + L
Sbjct: 69 R-----FKTITTAYYRGAMGIILVYDITD---EKSFENIQNWMKSIKENASAGVERLLLG 120
Query: 160 HKMDL-----VQEDQRDLIFKE 176
+K D+ VQ++Q D + +E
Sbjct: 121 NKCDMEAKRKVQKEQADKLARE 142
>gi|4758996 Ras-related protein Rab-33A [Homo sapiens]
Length = 237
Score = 37.7 bits (86), Expect = 0.015
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLV-LNLWDCGGQD 100
K++++G S GKT + + F D +D V G + + +WD GQ+
Sbjct: 38 KIIVIGDSNVGKTCL-TFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQE 96
Query: 101 TFMENYFTSQRDNIFRNVEVLIYVFDV 127
F + S ++ +RNV +++V+DV
Sbjct: 97 RFRK----SMVEHYYRNVHAVVFVYDV 119
>gi|4502205 ADP-ribosylation factor 4 [Homo sapiens]
Length = 180
Score = 37.4 bits (85), Expect = 0.020
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATID-VEHSHVRFLGNLVLNLWDCGGQD 100
++L++G +GKT++ + I +G ++ VE+ ++ F +WD GGQD
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICF------TVWDVGGQD 72
Query: 101 TFMENYFTSQRDNIFRNVEVLIYVFDVESRE-LEKDMHYYQSCLEAILQNSPDAKIFCLV 159
+ + F+N + LI+V D RE +++ Q L ++ DA +
Sbjct: 73 RIRPLW-----KHYFQNTQGLIFVVDSNDRERIQEVADELQKML--LVDELRDAVLLLFA 125
Query: 160 HKMDL 164
+K DL
Sbjct: 126 NKQDL 130
>gi|194363762 v-Ha-ras Harvey rat sarcoma viral oncogene homolog
isoform 1 [Homo sapiens]
Length = 189
Score = 37.0 bits (84), Expect = 0.026
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIA-------RDTRRLGATIDVEHSHVRFLGNLVLNLW 94
K++++G G GK+++ + N+ D+ R ID E +L++
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE--------TCLLDIL 56
Query: 95 DCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAK 154
D GQ+ + ++ RD R E + VF + + + +D+H Y+ ++ + ++S D
Sbjct: 57 DTAGQEEY-----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV-KDSDDVP 110
Query: 155 IFCLVHKMDL 164
+ + +K DL
Sbjct: 111 MVLVGNKCDL 120
>gi|34222246 v-Ha-ras Harvey rat sarcoma viral oncogene homolog
isoform 2 [Homo sapiens]
Length = 170
Score = 37.0 bits (84), Expect = 0.026
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIA-------RDTRRLGATIDVEHSHVRFLGNLVLNLW 94
K++++G G GK+++ + N+ D+ R ID E +L++
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE--------TCLLDIL 56
Query: 95 DCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAK 154
D GQ+ + ++ RD R E + VF + + + +D+H Y+ ++ + ++S D
Sbjct: 57 DTAGQEEY-----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV-KDSDDVP 110
Query: 155 IFCLVHKMDL 164
+ + +K DL
Sbjct: 111 MVLVGNKCDL 120
>gi|4885425 v-Ha-ras Harvey rat sarcoma viral oncogene homolog
isoform 1 [Homo sapiens]
Length = 189
Score = 37.0 bits (84), Expect = 0.026
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIA-------RDTRRLGATIDVEHSHVRFLGNLVLNLW 94
K++++G G GK+++ + N+ D+ R ID E +L++
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE--------TCLLDIL 56
Query: 95 DCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAK 154
D GQ+ + ++ RD R E + VF + + + +D+H Y+ ++ + ++S D
Sbjct: 57 DTAGQEEY-----SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV-KDSDDVP 110
Query: 155 IFCLVHKMDL 164
+ + +K DL
Sbjct: 111 MVLVGNKCDL 120
>gi|30520350 ADP-ribosylation factor-like 8 [Homo sapiens]
Length = 179
Score = 37.0 bits (84), Expect = 0.026
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATID---VEHSHVRFLGNLVLNLWDCGG 98
KV+++G +GKT++ N + + +G+ ++ V+++H FL +WD GG
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTH--FL------MWDIGG 69
Query: 99 QDTFMENYFTSQRDNIFRNVEVLIYVFDVESRE 131
Q++ ++ T + N E +I V D RE
Sbjct: 70 QESLRSSWNT-----YYSNTEFIILVVDSIDRE 97
>gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens]
Length = 199
Score = 37.0 bits (84), Expect = 0.026
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 35 PNTAMKKKVLLMGKSGSGKTSM-RSIIFANYIARDTRRLGATIDVEHSHVRFLGN--LVL 91
P + K++++G G GKTS+ + + LGA+I S + LG+ L L
Sbjct: 3 PRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASI---LSKIIILGDTTLKL 59
Query: 92 NLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQ-SCLEAILQNS 150
+WD GGQ+ F S ++ + I FDV E + + ++ L I+
Sbjct: 60 QIWDTGGQER-----FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPME 114
Query: 151 PDAKIFCLVHKMDL 164
+ L +K+DL
Sbjct: 115 QSYPMVLLGNKIDL 128
>gi|66879664 ADP-ribosylation factor 1 [Homo sapiens]
Length = 181
Score = 36.6 bits (83), Expect = 0.034
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 42 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATID-VEHSHVRFLGNLVLNLWDCGGQD 100
++L++G +GKT++ + I +G ++ VE+ ++ F +WD GGQD
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQD 72
Query: 101 TFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNS-PDAKIFCLV 159
+ + F+N + LI+V D RE + + + + ++ DA +
Sbjct: 73 KIRPLW-----RHYFQNTQGLIFVVDSNDRERVNEAR--EELMRMLAEDELRDAVLLVFA 125
Query: 160 HKMDL 164
+K DL
Sbjct: 126 NKQDL 130
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,554,523
Number of Sequences: 37866
Number of extensions: 516836
Number of successful extensions: 1714
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 1680
Number of HSP's gapped (non-prelim): 114
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.