Guide to the Human Genome
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Name: UNC13D Sequence: fasta or formatted (1090aa) NCBI GI: 46195765
Description:

unc-13 homolog D

Referenced in:

Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         84           3
 C cysteine            1.7         19           1
 D aspartate           4.3         47           2
 E glutamate           7.8         85           3
 F phenylalanine       3.7         40           1
 G glycine             4.8         52           2
 H histidine           3.9         43           2
 I isoleucine          3.2         35           1
 K lysine              3.9         42           2
 L leucine            14.1        154           3
 M methionine          1.5         16           1
 N asparagine          1.7         18           1
 P proline             5.6         61           3
 Q glutamine           8.0         87           3
 R arginine            6.6         72           4
 S serine              6.8         74           3
 T threonine           5.5         60           2
 V valine              6.2         68           3
 W tryptophan          1.3         14           1
 Y tyrosine            1.7         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   unc-13 homolog D 
BAIAP3                0.254   BAI1-associated protein 3 
UNC13B                0.048   UNC13 (C. elegans)-like 
UNC13A                0.034   unc-13 homolog A 
UNC13C                0.026   unc-13 homolog C 
SYT2                  0.020   synaptotagmin II 
SYT2                  0.020   synaptotagmin II 
SYT1                  0.020   synaptotagmin I 
SYT1                  0.020   synaptotagmin I 
SYT1                  0.020   synaptotagmin I 
LOC390213             0.019   PREDICTED: similar to hCG21066 
LOC390213             0.019   PREDICTED: similar to hCG21066 
LOC390213             0.019   PREDICTED: hypothetical protein LOC390213 
SYT7                  0.019   synaptotagmin VII 
SYT5                  0.018   synaptotagmin V 
SYT3                  0.016   synaptotagmin III 
SYT3                  0.016   synaptotagmin III 
SYT3                  0.016   synaptotagmin III 
SYT6                  0.016   synaptotagmin VI 
NEDD4L                0.014   neural precursor cell expressed, developmentally dow...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
NEDD4L                0.014   neural precursor cell expressed, developmentally do...
SYT10                 0.014   synaptotagmin X 
PRKCA                 0.014   protein kinase C, alpha 
DOC2A                 0.013   double C2-like domains, alpha 
RPH3A                 0.013   rabphilin 3A homolog isoform 1 
RPH3A                 0.013   rabphilin 3A homolog isoform 2 
DOC2B                 0.013   double C2-like domains, beta 
SYT9                  0.013   synaptotagmin IX 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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