Guide to the Human Genome
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Name: LOC390213 Sequence: fasta or formatted (451aa) NCBI GI: 169203543
Description:

PREDICTED: similar to hCG21066

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [451aa] PREDICTED: similar to hCG21066
alt prot [431aa] PREDICTED: hypothetical protein LOC390213
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         43           3
 C cysteine            2.7         12           2
 D aspartate           4.7         21           2
 E glutamate           5.8         26           2
 F phenylalanine       3.3         15           2
 G glycine             7.3         33           2
 H histidine           4.4         20           1
 I isoleucine          1.3          6           1
 K lysine              4.7         21           2
 L leucine            10.9         49           2
 M methionine          1.6          7           1
 N asparagine          2.0          9           1
 P proline             8.9         40           3
 Q glutamine           3.8         17           2
 R arginine            6.9         31           2
 S serine              7.8         35           2
 T threonine           4.9         22           1
 V valine              6.0         27           2
 W tryptophan          1.8          8           1
 Y tyrosine            2.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG21066 
LOC390213             1.000   PREDICTED: similar to hCG21066 
LOC390213             0.470   PREDICTED: hypothetical protein LOC390213 
DOC2A                 0.319   double C2-like domains, alpha 
RPH3A                 0.188   rabphilin 3A homolog isoform 1 
RPH3A                 0.188   rabphilin 3A homolog isoform 2 
DOC2B                 0.182   double C2-like domains, beta 
SYT2                  0.084   synaptotagmin II 
SYT2                  0.084   synaptotagmin II 
SYT1                  0.082   synaptotagmin I 
SYT1                  0.082   synaptotagmin I 
SYT1                  0.082   synaptotagmin I 
SYT6                  0.081   synaptotagmin VI 
SYT3                  0.074   synaptotagmin III 
SYT3                  0.074   synaptotagmin III 
SYT3                  0.074   synaptotagmin III 
SYT10                 0.074   synaptotagmin X 
SYT5                  0.072   synaptotagmin V 
PCLO                  0.072   piccolo isoform 2 
PCLO                  0.072   piccolo isoform 1 
SYT7                  0.072   synaptotagmin VII 
SYT9                  0.071   synaptotagmin IX 
SYT17                 0.068   B/K protein 
SYT4                  0.066   synaptotagmin IV 
SYT8                  0.062   synaptotagmin VIII 
ESYT2                 0.058   family with sequence similarity 62 (C2 domain contai...
SYTL4                 0.057   synaptotagmin-like 4 
SYTL4                 0.057   synaptotagmin-like 4 
PRKCA                 0.053   protein kinase C, alpha 
PRKCB                 0.051   protein kinase C, beta isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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