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Search of human proteins with 46049063
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46049063 exportin 6 [Homo sapiens]
(1125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46049063 exportin 6 [Homo sapiens] 2225 0.0
gi|4507943 exportin 1 [Homo sapiens] 44 7e-04
gi|148886661 exportin 4 [Homo sapiens] 36 0.18
gi|29029559 CSE1 chromosome segregation 1-like protein [Homo sap... 35 0.31
gi|5730120 YKT6 v-SNARE protein [Homo sapiens] 34 0.89
gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens] 34 0.89
gi|68303575 casein kinase 1, alpha 1 isoform 1 [Homo sapiens] 33 1.2
gi|68303572 casein kinase 1, alpha 1 isoform 2 [Homo sapiens] 33 1.2
gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo ... 33 2.0
gi|21624639 casein kinase 1, alpha 1-like [Homo sapiens] 32 2.6
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap... 32 4.4
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi... 32 4.4
gi|19923796 NMD3 homolog [Homo sapiens] 32 4.4
gi|148612805 pigeon homolog [Homo sapiens] 31 7.6
gi|183396780 ubiquitin specific protease 20 [Homo sapiens] 30 9.9
gi|183397136 ubiquitin specific protease 20 [Homo sapiens] 30 9.9
gi|183397134 ubiquitin specific protease 20 [Homo sapiens] 30 9.9
gi|24431935 reticulon 4 isoform A [Homo sapiens] 30 9.9
gi|239756284 PREDICTED: similar to GOLGA8B protein, partial [Hom... 30 9.9
gi|145580578 C-terminal binding protein 2 isoform 1 [Homo sapiens] 30 9.9
gi|4557499 C-terminal binding protein 2 isoform 1 [Homo sapiens] 30 9.9
gi|145580575 C-terminal binding protein 2 isoform 2 [Homo sapiens] 30 9.9
>gi|46049063 exportin 6 [Homo sapiens]
Length = 1125
Score = 2225 bits (5765), Expect = 0.0
Identities = 1125/1125 (100%), Positives = 1125/1125 (100%)
Query: 1 MASEEASLRALESLMTEFFHDCTTNERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYV 60
MASEEASLRALESLMTEFFHDCTTNERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYV
Sbjct: 1 MASEEASLRALESLMTEFFHDCTTNERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYV 60
Query: 61 MMYSLTVFENLINKMWLGVPSQDKMEIRSCLPKLLLAHHKTLPYFIRNKLCKVIVDIGRQ 120
MMYSLTVFENLINKMWLGVPSQDKMEIRSCLPKLLLAHHKTLPYFIRNKLCKVIVDIGRQ
Sbjct: 61 MMYSLTVFENLINKMWLGVPSQDKMEIRSCLPKLLLAHHKTLPYFIRNKLCKVIVDIGRQ 120
Query: 121 DWPMFYHDFFTNILQLIQSPVTTPLGLIMLKTTSEELACPREDLSVARKEELRKLLLDQV 180
DWPMFYHDFFTNILQLIQSPVTTPLGLIMLKTTSEELACPREDLSVARKEELRKLLLDQV
Sbjct: 121 DWPMFYHDFFTNILQLIQSPVTTPLGLIMLKTTSEELACPREDLSVARKEELRKLLLDQV 180
Query: 181 QTVLGLLTGILETVWDKHSVTAATPPPSPTSGESGDLLSNLLQSPSSAKLLNQPIPILDV 240
QTVLGLLTGILETVWDKHSVTAATPPPSPTSGESGDLLSNLLQSPSSAKLLNQPIPILDV
Sbjct: 181 QTVLGLLTGILETVWDKHSVTAATPPPSPTSGESGDLLSNLLQSPSSAKLLNQPIPILDV 240
Query: 241 ESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARFGCDIRARKMASVNGSSQNCV 300
ESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARFGCDIRARKMASVNGSSQNCV
Sbjct: 241 ESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARFGCDIRARKMASVNGSSQNCV 300
Query: 301 SGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQTFYLLQKITKDNNAHTVKSRL 360
SGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQTFYLLQKITKDNNAHTVKSRL
Sbjct: 301 SGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQTFYLLQKITKDNNAHTVKSRL 360
Query: 361 EELDESYIEKFTDFLRLFVSVHLRRIESYSQFPVVEFLTLLFKYTFHQPTHEGYFSCLDI 420
EELDESYIEKFTDFLRLFVSVHLRRIESYSQFPVVEFLTLLFKYTFHQPTHEGYFSCLDI
Sbjct: 361 EELDESYIEKFTDFLRLFVSVHLRRIESYSQFPVVEFLTLLFKYTFHQPTHEGYFSCLDI 420
Query: 421 WTLFLDYLTSKIKSRLGDKEAVLNRYEDALVLLLTEVLNRIQFRYNQAQLEELDDETLDD 480
WTLFLDYLTSKIKSRLGDKEAVLNRYEDALVLLLTEVLNRIQFRYNQAQLEELDDETLDD
Sbjct: 421 WTLFLDYLTSKIKSRLGDKEAVLNRYEDALVLLLTEVLNRIQFRYNQAQLEELDDETLDD 480
Query: 481 DQQTEWQRYLRQSLEVVAKVMELLPTHAFSTLFPVLQDNLEVYLGLQQFIVTSGSGHRLN 540
DQQTEWQRYLRQSLEVVAKVMELLPTHAFSTLFPVLQDNLEVYLGLQQFIVTSGSGHRLN
Sbjct: 481 DQQTEWQRYLRQSLEVVAKVMELLPTHAFSTLFPVLQDNLEVYLGLQQFIVTSGSGHRLN 540
Query: 541 ITAENDCRRLHCSLRDLSSLLQAVGRLAEYFIGDVFAARFNDALTVVERLVKVTLYGSQI 600
ITAENDCRRLHCSLRDLSSLLQAVGRLAEYFIGDVFAARFNDALTVVERLVKVTLYGSQI
Sbjct: 541 ITAENDCRRLHCSLRDLSSLLQAVGRLAEYFIGDVFAARFNDALTVVERLVKVTLYGSQI 600
Query: 601 KLYNIETAVPSVLKPDLIDVHAQSLAALQAYSHWLAQYCSEVHRQNTQQFVTLISTTMDA 660
KLYNIETAVPSVLKPDLIDVHAQSLAALQAYSHWLAQYCSEVHRQNTQQFVTLISTTMDA
Sbjct: 601 KLYNIETAVPSVLKPDLIDVHAQSLAALQAYSHWLAQYCSEVHRQNTQQFVTLISTTMDA 660
Query: 661 ITPLISTKVQDKLLLSACHLLVSLATTVRPVFLISIPAVQKVFNRITDASALRLVDKAQV 720
ITPLISTKVQDKLLLSACHLLVSLATTVRPVFLISIPAVQKVFNRITDASALRLVDKAQV
Sbjct: 661 ITPLISTKVQDKLLLSACHLLVSLATTVRPVFLISIPAVQKVFNRITDASALRLVDKAQV 720
Query: 721 LVCRALSNILLLPWPNLPENEQQWPVRSINHASLISALSRDYRNLKPSAVAPQRKMPLDD 780
LVCRALSNILLLPWPNLPENEQQWPVRSINHASLISALSRDYRNLKPSAVAPQRKMPLDD
Sbjct: 721 LVCRALSNILLLPWPNLPENEQQWPVRSINHASLISALSRDYRNLKPSAVAPQRKMPLDD 780
Query: 781 TKLIIHQTLSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAFIHQSDVTDEMLS 840
TKLIIHQTLSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAFIHQSDVTDEMLS
Sbjct: 781 TKLIIHQTLSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAFIHQSDVTDEMLS 840
Query: 841 FFLTLFRGLRVQMGVPFTEQIIQTFLNMFTREQLAESILHEGSTGCRVVEKFLKILQVVV 900
FFLTLFRGLRVQMGVPFTEQIIQTFLNMFTREQLAESILHEGSTGCRVVEKFLKILQVVV
Sbjct: 841 FFLTLFRGLRVQMGVPFTEQIIQTFLNMFTREQLAESILHEGSTGCRVVEKFLKILQVVV 900
Query: 901 QEPGQVFKPFLPSIIALCMEQVYPIIAERPSPDVKAELFELLFRTLHHNWRYFFKSTVLA 960
QEPGQVFKPFLPSIIALCMEQVYPIIAERPSPDVKAELFELLFRTLHHNWRYFFKSTVLA
Sbjct: 901 QEPGQVFKPFLPSIIALCMEQVYPIIAERPSPDVKAELFELLFRTLHHNWRYFFKSTVLA 960
Query: 961 SVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNTKQKLYHKKIFRT 1020
SVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNTKQKLYHKKIFRT
Sbjct: 961 SVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNTKQKLYHKKIFRT 1020
Query: 1021 AMLFQFVNVLLQVLVHKSHDLLQEEIGIAIYNMASVDFDGFFAAFLPEFLTSCDGVDANQ 1080
AMLFQFVNVLLQVLVHKSHDLLQEEIGIAIYNMASVDFDGFFAAFLPEFLTSCDGVDANQ
Sbjct: 1021 AMLFQFVNVLLQVLVHKSHDLLQEEIGIAIYNMASVDFDGFFAAFLPEFLTSCDGVDANQ 1080
Query: 1081 KSVLGRNFKMDRDLPSFTQNVHRLVNDLRYYRLCNDSLPPGTVKL 1125
KSVLGRNFKMDRDLPSFTQNVHRLVNDLRYYRLCNDSLPPGTVKL
Sbjct: 1081 KSVLGRNFKMDRDLPSFTQNVHRLVNDLRYYRLCNDSLPPGTVKL 1125
>gi|4507943 exportin 1 [Homo sapiens]
Length = 1071
Score = 44.3 bits (103), Expect = 7e-04
Identities = 69/395 (17%), Positives = 147/395 (37%), Gaps = 86/395 (21%)
Query: 3 SEEASLRALESLMTEFFHDCTTNERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYVMM 62
S++ + L++++ +H ++R +E+L + + AW L ++N
Sbjct: 20 SQKLDINLLDNVVNCLYHG--EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKY 77
Query: 63 YSLTVFENLINKMWLGVPSQDKMEIRSCLPKLLL-------AHHKTLPYFIRNKLCKVIV 115
Y L + EN+I W +P I+ + L++ K Y KL ++V
Sbjct: 78 YGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYI--GKLNMILV 135
Query: 116 DIGRQDWPMFYHDFFTNILQLIQ-SPVTTPLGLIMLKTTSEEL-ACPREDLSVARKEELR 173
I +Q+WP + F ++I+ + S +++LK SEE+ ++ + + L+
Sbjct: 136 QILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKSKHLK 195
Query: 174 KLLLDQVQTVLGLLTGILETVWDKHSVTAATPPPSPTSGESGDLLSNLLQSPSSAKLLNQ 233
+ ++ + L ++E +Q
Sbjct: 196 DSMCNEFSQIFQLCQFVMEN--------------------------------------SQ 217
Query: 234 PIPILDVESEYICSLALECLAHLFSWIPLSASITPSLLTTIFHFARFGCDIRARKMASVN 293
P++ LE L +WIPL L++T+ + K +V
Sbjct: 218 NAPLVHA--------TLETLLRFLNWIPLGYIFETKLISTLIY-----------KFLNV- 257
Query: 294 GSSQNCVSGQERGRLGVLAMSCINELMSKNCVPMEFEEYLLRMFQQT-FYLLQKITKDNN 352
+++ C+ E+ + ++EE + +F T L Q + + N
Sbjct: 258 ------------PMFRNVSLKCLTEIAGVSV--SQYEEQFVTLFTLTMMQLKQMLPLNTN 303
Query: 353 AHTVKSRLEELDESYIEKFTDFLRLFVSVHLRRIE 387
S ++ ++++I+ + FL F+ H + IE
Sbjct: 304 IRLAYSNGKDDEQNFIQNLSLFLCTFLKEHDQLIE 338
>gi|148886661 exportin 4 [Homo sapiens]
Length = 1151
Score = 36.2 bits (82), Expect = 0.18
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 25 NERKREIEELLNNFAQQIGAWRFCLYFLSSTRNDYVMMYSLTVFENLINKMWLGVPSQDK 84
NE+++ E + +F + + C + L +++ DYV+ + T + + W+ +
Sbjct: 31 NEQRQHAEHIFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKGSI 90
Query: 85 MEIRSCLPKLLLAHHKTLPYFIRNKL---CKVIVDIGRQDWPMFYHDFFTNILQLIQS 139
+R+ L +L L ++R ++ VIV G D + F + QLI S
Sbjct: 91 ESLRTFLLTYVL-QRPNLQKYVREQILLAVAVIVKRGSLDKSIDCKSIFHEVSQLISS 147
>gi|29029559 CSE1 chromosome segregation 1-like protein [Homo
sapiens]
Length = 971
Score = 35.4 bits (80), Expect = 0.31
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 49 LYFLSSTRNDYVMMYSLTVFENLINKMWLGVPSQ-------DKMEIRSCLPKLLLAHHKT 101
L L ++++ + + + F+N I + W V + D++ I++ + L+L+
Sbjct: 47 LTLLEKSQDNVIKVCASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSS--- 103
Query: 102 LPYFIRNKLCKVIVDIGRQDWPMFYHDFFTNILQLIQS 139
P I+ +L I IGR+D+P + D T ++ QS
Sbjct: 104 -PEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQS 140
>gi|5730120 YKT6 v-SNARE protein [Homo sapiens]
Length = 198
Score = 33.9 bits (76), Expect = 0.89
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 744 WPVRS---INHASLISALSRDYRNLKPSAVAPQRKMPLDDTKLIIHQTLSVLEDIVENIS 800
WPV S I++ +L LSR Y+N + + + + LD+TK+I+H T+ L + E +
Sbjct: 110 WPVGSPATIHYPALDGHLSR-YQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLD 168
Query: 801 GESTKSRQICYQS 813
+KS + QS
Sbjct: 169 DLVSKSEVLGTQS 181
>gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]
Length = 4116
Score = 33.9 bits (76), Expect = 0.89
Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 22/174 (12%)
Query: 901 QEPGQVFKPFLPSIIALCMEQVYPIIAERPSPDVKAELFELLFRTLHHNWRYFFK----- 955
+EP Q K F+P +I + +E PII PS D EL F + N K
Sbjct: 474 KEPYQEMKFFIPQLIMIKLEVSEPIIVFNPSFDGCWELIRDSFLEIIKNSNGIPKLKYIP 533
Query: 956 ---STVLASVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNTKQKL 1012
S A+ R + EP A A + K L T+N ++KL
Sbjct: 534 LKFSFTAAAADRQCVKAAEPGEPSMHAAATAMAE---------LKGYNLLLGTVNAEEKL 584
Query: 1013 YHKKIFRTAMLFQ--FVNVLLQVLVHKSH-DLLQE--EIGIAIYNMASVDFDGF 1061
+ +T +FQ V + V+K + DLL E IA + + D D F
Sbjct: 585 VSDFLIQTFKVFQKNQVGPCKYLNVYKKYVDLLDNTAEQNIAAFLKENHDIDDF 638
>gi|68303575 casein kinase 1, alpha 1 isoform 1 [Homo sapiens]
Length = 365
Score = 33.5 bits (75), Expect = 1.2
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 877 SILHEGSTGCRVVEKFLKILQVVVQEPGQVFKPFLPSIIALCMEQVYPI-IAERPSPDVK 935
S+ +G +K+ KI + + P +V P+ A+ + + E P
Sbjct: 246 SLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYL 305
Query: 936 AELFELLFRTLHHNWRYFFKSTVL 959
+LF +LFRTL+H + Y F T+L
Sbjct: 306 RQLFRILFRTLNHQYDYTFDWTML 329
>gi|68303572 casein kinase 1, alpha 1 isoform 2 [Homo sapiens]
Length = 337
Score = 33.5 bits (75), Expect = 1.2
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 877 SILHEGSTGCRVVEKFLKILQVVVQEPGQVFKPFLPSIIALCMEQVYPI-IAERPSPDVK 935
S+ +G +K+ KI + + P +V P+ A+ + + E P
Sbjct: 218 SLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYL 277
Query: 936 AELFELLFRTLHHNWRYFFKSTVL 959
+LF +LFRTL+H + Y F T+L
Sbjct: 278 RQLFRILFRTLNHQYDYTFDWTML 301
>gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo
sapiens]
Length = 1386
Score = 32.7 bits (73), Expect = 2.0
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 752 ASLISALSRDYRNLKPSAVAPQRKMPLDDTKL--IIHQTLSVLED------IVENISGES 803
A+L + L DY N P P R P+D L I T VL+D ++ IS E
Sbjct: 701 ATLNAELFSDYFNSCPVITIPGRTFPVDQFFLEDAIAVTRYVLQDGSPYMRSMKQISKEK 760
Query: 804 TKSR--QICYQSLQESVQVSLALFPAFIHQSDVTDEMLSFFLTLFRGLRVQMGVPFTEQI 861
K+R + ++ ++E +++SL L + V D+ L F L R V V T I
Sbjct: 761 LKARRNRTAFEEVEEDLRLSLHLQDQDSVKDAVPDQQLDFKQLLARYKGVSKSVIKTMSI 820
Query: 862 I 862
+
Sbjct: 821 M 821
>gi|21624639 casein kinase 1, alpha 1-like [Homo sapiens]
Length = 337
Score = 32.3 bits (72), Expect = 2.6
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 890 EKFLKILQVVVQEPGQVFKPFLPSIIALCMEQVYPI-IAERPSPDVKAELFELLFRTLHH 948
+K+ KI + + P +V P+ A+ + + E P +LF +LFRTL+H
Sbjct: 231 QKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEVPDYMYLRQLFRILFRTLNH 290
Query: 949 NWRYFFKSTVL 959
+ Y F T+L
Sbjct: 291 QYDYTFDWTML 301
>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
sapiens]
Length = 603
Score = 31.6 bits (70), Expect = 4.4
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 155 EELACPREDLSVARKEELRKLLLDQ-VQTVLGLLTGILETVWDKHSVTAATPPPSPTSGE 213
++LA P+ DL + E L L+Q V+ + L ++ET+ A P S T GE
Sbjct: 357 QQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMETLTSAEKEPEAAVPASGTGGE 416
Query: 214 SGDLLSNL 221
S L+ L
Sbjct: 417 SSGLMDLL 424
>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
sapiens]
Length = 603
Score = 31.6 bits (70), Expect = 4.4
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 155 EELACPREDLSVARKEELRKLLLDQ-VQTVLGLLTGILETVWDKHSVTAATPPPSPTSGE 213
++LA P+ DL + E L L+Q V+ + L ++ET+ A P S T GE
Sbjct: 357 QQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMETLTSAEKEPEAAVPASGTGGE 416
Query: 214 SGDLLSNL 221
S L+ L
Sbjct: 417 SSGLMDLL 424
>gi|19923796 NMD3 homolog [Homo sapiens]
Length = 503
Score = 31.6 bits (70), Expect = 4.4
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 892 FLKILQVVVQEPGQVFKPFLPS--IIALCMEQVYPIIAERPSPDVKAELFELLFR-TLHH 948
F K Q Q PG + L S ++ALC++++ +P K L + F T H
Sbjct: 54 FCKQCQRYFQPPGTWIQCALESRELLALCLKKI-------KAPLSKVRLVDAGFVWTEPH 106
Query: 949 NWRYFFKSTVLASVQRGIAEEQMENEPQFSAIMQAFGQSFLQPDIHLFKQNLFYLETLNT 1008
+ R K T+ V G +Q+ ++ QS + D H + F+ +
Sbjct: 107 SKRLKVKLTIQKEVMNGAILQQV-------FVVDYVVQSQMCGDCHRVEAKDFWKAVIQV 159
Query: 1009 KQKLYHKKIF 1018
+QK HKK F
Sbjct: 160 RQKTLHKKTF 169
>gi|148612805 pigeon homolog [Homo sapiens]
Length = 854
Score = 30.8 bits (68), Expect = 7.6
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 164 LSVARKEELRKLLLDQVQTVLGLLTGILETVWDKHSV 200
L K+++ +++LD + +L L+ I+ET W KH++
Sbjct: 622 LQGVEKKKIEQMVLDYISKLLDLICHIVETNWRKHNL 658
>gi|183396780 ubiquitin specific protease 20 [Homo sapiens]
Length = 914
Score = 30.4 bits (67), Expect = 9.9
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 6 ASLRALESL--MTEFFHDCTTNERKREIEELLNNFAQQIG-AWRFCLYFLSSTRNDYVMM 62
A+L+AL + +T+FF +C R + L ++ + + W R YV+
Sbjct: 158 AALQALSNCPPLTQFFLECGGLVRTDKKPALCKSYQKLVSEVWH-------KKRPSYVVP 210
Query: 63 YSLTVFENLINKMWLGVPSQDKMEIRSCL 91
SL+ L+N M+ G QD E CL
Sbjct: 211 TSLSHGIKLVNPMFRGYAQQDTQEFLRCL 239
>gi|183397136 ubiquitin specific protease 20 [Homo sapiens]
Length = 914
Score = 30.4 bits (67), Expect = 9.9
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 6 ASLRALESL--MTEFFHDCTTNERKREIEELLNNFAQQIG-AWRFCLYFLSSTRNDYVMM 62
A+L+AL + +T+FF +C R + L ++ + + W R YV+
Sbjct: 158 AALQALSNCPPLTQFFLECGGLVRTDKKPALCKSYQKLVSEVWH-------KKRPSYVVP 210
Query: 63 YSLTVFENLINKMWLGVPSQDKMEIRSCL 91
SL+ L+N M+ G QD E CL
Sbjct: 211 TSLSHGIKLVNPMFRGYAQQDTQEFLRCL 239
>gi|183397134 ubiquitin specific protease 20 [Homo sapiens]
Length = 914
Score = 30.4 bits (67), Expect = 9.9
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 6 ASLRALESL--MTEFFHDCTTNERKREIEELLNNFAQQIG-AWRFCLYFLSSTRNDYVMM 62
A+L+AL + +T+FF +C R + L ++ + + W R YV+
Sbjct: 158 AALQALSNCPPLTQFFLECGGLVRTDKKPALCKSYQKLVSEVWH-------KKRPSYVVP 210
Query: 63 YSLTVFENLINKMWLGVPSQDKMEIRSCL 91
SL+ L+N M+ G QD E CL
Sbjct: 211 TSLSHGIKLVNPMFRGYAQQDTQEFLRCL 239
>gi|24431935 reticulon 4 isoform A [Homo sapiens]
Length = 1192
Score = 30.4 bits (67), Expect = 9.9
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 192 ETVWDKHSVTAATPPPSPTS----GESGDLLSNLLQSPSSAK-----------LLNQPIP 236
E VW + A PP +P + G SG + L P++++ L QP
Sbjct: 156 EPVWTPPAPAPAAPPSTPAAPKRRGSSGSVDETLFALPAASEPVIRSSAENMDLKEQPGN 215
Query: 237 ILDVESEYICSLALECLAHLFSWIPLSAS 265
+ E S+ LE A L S PLSA+
Sbjct: 216 TISAGQEDFPSVLLETAASLPSLSPLSAA 244
>gi|239756284 PREDICTED: similar to GOLGA8B protein, partial [Homo
sapiens]
Length = 314
Score = 30.4 bits (67), Expect = 9.9
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 155 EELACPREDLSVARKEELRKLLLDQ-VQTVLGLLTGILETVWDKHSVTAATPPPSPTSGE 213
++LA P+ DL + E L L+Q V+ + L + ET+ A P S T GE
Sbjct: 69 QQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVTETLTSAEKEPEAAVPASGTGGE 128
Query: 214 SGDLLSNL 221
S L+ L
Sbjct: 129 SSGLMDLL 136
>gi|145580578 C-terminal binding protein 2 isoform 1 [Homo sapiens]
Length = 445
Score = 30.4 bits (67), Expect = 9.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 509 FSTLF--PVLQDNLEVYLGLQQFIVTSGSGHRLNITAENDCRRLHCSLRD 556
FS +F P LQD +E LG+Q+ ++ ++DC LHC+L +
Sbjct: 204 FSVIFYDPYLQDGIERSLGVQRVYTLQ------DLLYQSDCVSLHCNLNE 247
>gi|4557499 C-terminal binding protein 2 isoform 1 [Homo sapiens]
Length = 445
Score = 30.4 bits (67), Expect = 9.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 509 FSTLF--PVLQDNLEVYLGLQQFIVTSGSGHRLNITAENDCRRLHCSLRD 556
FS +F P LQD +E LG+Q+ ++ ++DC LHC+L +
Sbjct: 204 FSVIFYDPYLQDGIERSLGVQRVYTLQ------DLLYQSDCVSLHCNLNE 247
>gi|145580575 C-terminal binding protein 2 isoform 2 [Homo sapiens]
Length = 985
Score = 30.4 bits (67), Expect = 9.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 509 FSTLF--PVLQDNLEVYLGLQQFIVTSGSGHRLNITAENDCRRLHCSLRD 556
FS +F P LQD +E LG+Q+ ++ ++DC LHC+L +
Sbjct: 744 FSVIFYDPYLQDGIERSLGVQRVYTLQ------DLLYQSDCVSLHCNLNE 787
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,553,306
Number of Sequences: 37866
Number of extensions: 1641920
Number of successful extensions: 5785
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5773
Number of HSP's gapped (non-prelim): 30
length of query: 1125
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1012
effective length of database: 13,968,660
effective search space: 14136283920
effective search space used: 14136283920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.