Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 132566537
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo
sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo sa... 329 7e-91
gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo sa... 323 4e-89
gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo... 322 6e-89
gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor... 322 6e-89
gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor... 322 6e-89
gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor... 315 1e-86
gi|4504989 luteinizing hormone beta subunit precursor [Homo sapi... 239 7e-64
gi|115430099 thyroid stimulating hormone, beta precursor [Homo s... 96 1e-20
gi|66528995 follicle stimulating hormone, beta polypeptide precu... 86 1e-17
gi|4503791 follicle stimulating hormone, beta polypeptide precur... 86 1e-17
gi|134031945 SCO-spondin [Homo sapiens] 34 0.044
gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isof... 32 0.29
gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isofo... 32 0.29
gi|10863911 serine protease inhibitor, Kazal type 2 (acrosin-try... 32 0.29
gi|56118234 proline rich 6 [Homo sapiens] 30 0.83
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 30 0.83
gi|161019170 mucin 5AC [Homo sapiens] 30 1.1
gi|116284392 mucin 2 precursor [Homo sapiens] 30 1.1
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 30 1.1
gi|4507475 transglutaminase 1 [Homo sapiens] 29 1.4
gi|23397498 transmembrane protein 92 [Homo sapiens] 29 1.4
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 29 1.9
gi|108773804 Fraser syndrome 1 [Homo sapiens] 29 1.9
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 28 2.4
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 28 2.4
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 28 3.2
gi|194294562 purinergic receptor P2Y, G-protein coupled, 13 [Hom... 28 3.2
gi|38146118 hypothetical protein LOC10712 isoform b [Homo sapiens] 28 4.1
gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens] 28 4.1
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 28 4.1
>gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo
sapiens]
Length = 155
Score = 329 bits (843), Expect = 7e-91
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
Query: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP
Sbjct: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
>gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo
sapiens]
Length = 163
Score = 323 bits (828), Expect = 4e-89
Identities = 153/155 (98%), Positives = 153/155 (98%)
Query: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
MSK LLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
Query: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
PKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGP
Sbjct: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGP 155
>gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo
sapiens]
Length = 165
Score = 322 bits (826), Expect = 6e-89
Identities = 152/155 (98%), Positives = 153/155 (98%)
Query: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
M + LLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 3 MFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
Query: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP
Sbjct: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 157
>gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor
[Homo sapiens]
Length = 165
Score = 322 bits (826), Expect = 6e-89
Identities = 152/155 (98%), Positives = 153/155 (98%)
Query: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
M + LLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 3 MFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
Query: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP
Sbjct: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 157
>gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor
[Homo sapiens]
Length = 165
Score = 322 bits (826), Expect = 6e-89
Identities = 152/155 (98%), Positives = 153/155 (98%)
Query: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
M + LLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 3 MFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
Query: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP
Sbjct: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 157
>gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor
[Homo sapiens]
Length = 165
Score = 315 bits (806), Expect = 1e-86
Identities = 149/155 (96%), Positives = 151/155 (97%)
Query: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
M + LLLLLLLSMGGTWAS+E LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 3 MFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
Query: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
PKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGP
Sbjct: 123 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGP 157
>gi|4504989 luteinizing hormone beta subunit precursor [Homo
sapiens]
Length = 141
Score = 239 bits (610), Expect = 7e-64
Identities = 111/132 (84%), Positives = 118/132 (89%)
Query: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
M + LLLLLLLSMGG WAS+EPLRP C PINA LAVEKEGCPVCITVNTTICAGYCPTM
Sbjct: 3 MLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPTMM 62
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQ VLP LPQVVC YRDVRFESIRLPGCPRGV+PVVS+ VALSC+C CRRST+DCGG
Sbjct: 63 RVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCGG 122
Query: 121 PKDHPLTCDDPR 132
PKDHPLTCD P+
Sbjct: 123 PKDHPLTCDHPQ 134
>gi|115430099 thyroid stimulating hormone, beta precursor [Homo
sapiens]
Length = 138
Score = 95.9 bits (237), Expect = 1e-20
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 27 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL----PALPQVVCNYRDVRF 82
C P T+ +E+ C C+T+NTTICAGYC MTR + G L AL Q VC YRD +
Sbjct: 22 CIPTEYTMHIERRECAYCLTINTTICAGYC--MTRDINGKLFLPKYALSQDVCTYRDFIY 79
Query: 83 ESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 118
++ +PGCP V P SY VALSC+C C +DC
Sbjct: 80 RTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDC 115
>gi|66528995 follicle stimulating hormone, beta polypeptide
precursor [Homo sapiens]
Length = 129
Score = 85.9 bits (211), Expect = 1e-17
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 27 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 84
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
Query: 85 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 118
+R+PGC + + +Y VA C C C +TDC
Sbjct: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
>gi|4503791 follicle stimulating hormone, beta polypeptide precursor
[Homo sapiens]
Length = 129
Score = 85.9 bits (211), Expect = 1e-17
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 27 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 84
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
Query: 85 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 118
+R+PGC + + +Y VA C C C +TDC
Sbjct: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 34.3 bits (77), Expect = 0.044
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 17/76 (22%)
Query: 47 VNTTICAGYCPTMTRVLQGVLPALPQV-----VCNYR-----DVRFESIRLPGCPRGVNP 96
V + C+GYCP+ T V+P P + C+YR VR ++R C G
Sbjct: 5072 VEVSYCSGYCPSSTH----VMPEEPYLQSQCDCCSYRLDPESPVRILNLR---CLGGHTE 5124
Query: 97 VVSYAVALSCQCALCR 112
V V SCQC+ C+
Sbjct: 5125 PVVLPVIHSCQCSSCQ 5140
Score = 27.3 bits (59), Expect = 5.4
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 104 LSCQCALCRRSTTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSP--SRLPGP 155
+SC C + C G D P D P PSLP+P S LPGP
Sbjct: 1497 VSCVDGTCLGAIQLCDG------VWDCPDGADEGPGHCPLPSLPTPPASTLPGP 1544
Score = 26.9 bits (58), Expect = 7.0
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 67 LPALPQVVCNYRDVRFESIRLPGCPR--GVNPVVSYA-VALSCQCALCRRSTTDCGGPKD 123
LPA P +C+ + E L GC R G P ++ + SC L R T C P
Sbjct: 3226 LPATPTPLCSGPEAEEEPCLLQGCDRAGGWGPWGPWSHCSRSCGGGL-RSRTRACDQPPP 3284
Query: 124 HPL--TCDDPRFQDSSSSKAPPP 144
L C+ PR Q P P
Sbjct: 3285 QGLGDYCEGPRAQGEVCQALPCP 3307
>gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isoform
2 [Homo sapiens]
Length = 1562
Score = 31.6 bits (70), Expect = 0.29
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 114 STTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
S+ G + P PR S PPP LP P R+ GP
Sbjct: 125 SSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGP 166
>gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isoform
1 [Homo sapiens]
Length = 1522
Score = 31.6 bits (70), Expect = 0.29
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 114 STTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
S+ G + P PR S PPP LP P R+ GP
Sbjct: 125 SSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGP 166
>gi|10863911 serine protease inhibitor, Kazal type 2
(acrosin-trypsin inhibitor) [Homo sapiens]
Length = 84
Score = 31.6 bits (70), Expect = 0.29
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 77 YRDVRFESIRLPGCPRGVNPVV-SYAVALSCQCALCRR 113
YR RLPGCPR NPV S + +C LC +
Sbjct: 31 YRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMK 68
>gi|56118234 proline rich 6 [Homo sapiens]
Length = 272
Score = 30.0 bits (66), Expect = 0.83
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 96 PVVSYAVALSCQCALCRRSTTDCGG--------PKDHP-LTCDDPRFQDSSSSKAPPPSL 146
P S A AL+ RRS + G P + P L PR Q+ + PPP L
Sbjct: 24 PAASAAAALAPSATRTRRSASQAGSKSQAVEKPPSEKPRLRRSSPRAQEEGPGEPPPPEL 83
Query: 147 ----PSPSRLPGP 155
P P P P
Sbjct: 84 ALLPPPPPPPPTP 96
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 30.0 bits (66), Expect = 0.83
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 110 LCRRSTTDCG-----GPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
LCRR G GP+ L P ++ ++ PPP P P LPGP
Sbjct: 393 LCRRRKAGRGRKADAGPEGRLLPLPMPTGLVAALAEPPPPPPPPPPALPGP 443
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 29.6 bits (65), Expect = 1.1
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 30 INATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQ-VVCNYRDVRFESIRLP 88
IN T+ + +GC VN T C G CP ++ Q C R V E++ L
Sbjct: 5999 INTTI-LWHQGCET--EVNITFCEGSCPGASKYSAEAQAMQHQCTCCQERRVHEETVPL- 6054
Query: 89 GCPRGVNPVVSYAVALSCQCAL 110
CP G + +Y A+ C L
Sbjct: 6055 HCPNGSAILHTYTHAVQVLCGL 6076
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 29.6 bits (65), Expect = 1.1
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 16 TWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVC 75
T + R C + T V GC + +N C+G C T C
Sbjct: 5064 TCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNH--CSGSCGTFVMYSAKAQALDHSCSC 5121
Query: 76 NYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGP 121
+ + + CP G + +Y SCQC T CG P
Sbjct: 5122 CKEEKTSQREVVLSCPNGGSLTHTYTHIESCQC-----QDTVCGLP 5162
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 29.6 bits (65), Expect = 1.1
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 16 TWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVC 75
T + R C + T V GC + +N C+G C T C
Sbjct: 2524 TCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNH--CSGSCGTFVMYSAKAQALDHSCSC 2581
Query: 76 NYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGP 121
+ + + CP G + +Y SCQC T CG P
Sbjct: 2582 CKEEKTSQREVVLSCPNGGSLTHTYTHIESCQC-----QDTVCGLP 2622
>gi|4507475 transglutaminase 1 [Homo sapiens]
Length = 817
Score = 29.3 bits (64), Expect = 1.4
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 103 ALSCQCALCRRSTTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLP 153
A C C CR + D GP+ D R + SSS P S S SR P
Sbjct: 45 ARCCGCCSCRNAADDDWGPEP-----SDSRGRGSSSGTRRPGSRGSDSRRP 90
>gi|23397498 transmembrane protein 92 [Homo sapiens]
Length = 159
Score = 29.3 bits (64), Expect = 1.4
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 106 CQCALCRR----STTDCGGPKDHPLTCDDPRFQDSSSSKAPP-------PSL-PSPSRLP 153
C C CR + DC GP + P R + S S+ PP PSL P+P+ P
Sbjct: 78 CFCRNCREPEPDTPVDCRGPLELPSIIPPERVRVSLSAPPPPYSEVILKPSLGPTPTEPP 137
Query: 154 GP 155
P
Sbjct: 138 PP 139
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 28.9 bits (63), Expect = 1.9
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 16/71 (22%)
Query: 88 PGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSL- 146
PG P+ +P ++Y A S T GP+ PLT P S+ P P L
Sbjct: 1039 PGPPQPPHPPLAYGPAPS----------TRPMGPQAAPLTIRGP---SSAGQSTPSPHLV 1085
Query: 147 --PSPSRLPGP 155
P+PS PGP
Sbjct: 1086 PSPAPSPGPGP 1096
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 28.9 bits (63), Expect = 1.9
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 108 CALCRRSTTDCGGPKD-HPLTCDDP 131
CA+C S C GP + H L C DP
Sbjct: 510 CAVCHESCAGCWGPTEKHCLACRDP 534
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 28.5 bits (62), Expect = 2.4
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 30 INATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQ-VVCNYRDVRFESIRLP 88
IN T+ + +GC VN T C G CP ++ Q C R V E++ L
Sbjct: 5665 INTTI-LWHQGCET--EVNITFCEGSCPGASKYSAEAQAMQHQCTCCQERRVHEETVPL- 5720
Query: 89 GCPRGVNPVVSYAVALSCQC 108
CP G + +Y C C
Sbjct: 5721 HCPNGSAILHTYTHVDECGC 5740
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 28.5 bits (62), Expect = 2.4
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 84 SIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCDDPRF----QDSSSS 139
S + PGC G+ + S C + T DHP +P+ + ++
Sbjct: 735 SAQEPGCCPGLPHLCSAQGLAPAPCLVTPSWTETASSGGDHPQA--EPKLATEAEGTTGP 792
Query: 140 KAPPPSLPSPSRLPGP 155
+ P PS+PSPS+ P
Sbjct: 793 RLPLPSVPSPSQEGAP 808
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 28.1 bits (61), Expect = 3.2
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 112 RRSTTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
RR D GG +D D R +D SS KA PP +PS P P
Sbjct: 769 RRKALD-GGDRDRDR--DRDRDRDRSSKKARPPKESAPSSGPPP 809
Score = 26.9 bits (58), Expect = 7.0
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 108 CALCRRSTTDCGGPKDHPL-----TCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
CA T GGP P + P SS S PPP P+P P P
Sbjct: 171 CARHLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPPPPPPPAPPAPPAP 223
>gi|194294562 purinergic receptor P2Y, G-protein coupled, 13 [Homo
sapiens]
Length = 354
Score = 28.1 bits (61), Expect = 3.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 47 VNTTICAGY-----CPTMTRVLQGVLPALPQVV 74
+NTT+ G+ CP TR++Q V PAL VV
Sbjct: 22 MNTTVMQGFNRSERCPRDTRIVQLVFPALYTVV 54
>gi|38146118 hypothetical protein LOC10712 isoform b [Homo sapiens]
Length = 572
Score = 27.7 bits (60), Expect = 4.1
Identities = 27/75 (36%), Positives = 28/75 (37%), Gaps = 16/75 (21%)
Query: 86 RLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLT-CDDPRFQDSSSSKAPP- 143
RL G P V P C L RR G P P T RF DSS S PP
Sbjct: 328 RLEGWPPWVGP---------CFPELRRRVPRGGGRPAAAPPTRAPTRRFSDSSGSLTPPG 378
Query: 144 -----PSLPSPSRLP 153
P+ P P LP
Sbjct: 379 HRPPHPASPPPLLLP 393
>gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens]
Length = 668
Score = 27.7 bits (60), Expect = 4.1
Identities = 27/75 (36%), Positives = 28/75 (37%), Gaps = 16/75 (21%)
Query: 86 RLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLT-CDDPRFQDSSSSKAPP- 143
RL G P V P C L RR G P P T RF DSS S PP
Sbjct: 424 RLEGWPPWVGP---------CFPELRRRVPRGGGRPAAAPPTRAPTRRFSDSSGSLTPPG 474
Query: 144 -----PSLPSPSRLP 153
P+ P P LP
Sbjct: 475 HRPPHPASPPPLLLP 489
>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
[Homo sapiens]
Length = 355
Score = 27.7 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Query: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
P PL P Q PPP P PS LP P
Sbjct: 264 PPPRPLPPRPPAAQPRPPPSPPPPPPPPPSPLPPP 298
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,900,154
Number of Sequences: 37866
Number of extensions: 422180
Number of successful extensions: 2456
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2375
Number of HSP's gapped (non-prelim): 115
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.