Search of human proteins with 13236583

Search of human proteins with 13236583

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13236583 BRCA1/BRCA2-containing complex, subunit 3 isoform 1
[Homo sapiens]
         (316 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13236583 BRCA1/BRCA2-containing complex, subunit 3 isoform 1 ...   632   0.0  
gi|64762484 BRCA1/BRCA2-containing complex, subunit 3 isoform 2 ...   566   e-162
gi|5031981 proteasome 26S subunit, non-ATPase 14 [Homo sapiens]        64   2e-10
gi|38027923 COP9 signalosome subunit 5 [Homo sapiens]                  49   4e-06
gi|31542699 MPN domain containing isoform 1 [Homo sapiens]             46   4e-05
gi|229577180 MPN domain containing isoform 2 [Homo sapiens]            42   7e-04
gi|148227842 Myb-like, SWIRM and MPN domains 1 [Homo sapiens]          40   0.002
gi|47132534 STAM binding protein [Homo sapiens]                        36   0.051
gi|42519912 STAM binding protein [Homo sapiens]                        36   0.051
gi|5453545 STAM binding protein [Homo sapiens]                         36   0.051
gi|33147080 STAM binding protein-like 1 [Homo sapiens]                 35   0.11 
gi|4502395 beclin 1 [Homo sapiens]                                     34   0.15 
gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]    33   0.33 
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]    33   0.33 
gi|119120918 coiled-coil domain containing 64 [Homo sapiens]           32   0.96 
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    31   1.3  
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    31   1.3  
gi|71274152 hypothetical protein LOC388939 [Homo sapiens]              31   1.3  
gi|5032281 dystrophin Dp427c isoform [Homo sapiens]                    31   1.6  
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]                   31   1.6  
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]                   31   1.6  
gi|5032285 dystrophin Dp427l isoform [Homo sapiens]                    31   1.6  
gi|5032283 dystrophin Dp427m isoform [Homo sapiens]                    31   1.6  
gi|28933465 syntaxin 12 [Homo sapiens]                                 31   1.6  
gi|117553613 coiled-coil domain containing 151 [Homo sapiens]          30   2.1  
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]     30   2.8  
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]          30   2.8  
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]          30   2.8  
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]          30   2.8  
gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]        30   2.8  

>gi|13236583 BRCA1/BRCA2-containing complex, subunit 3 isoform 1
           [Homo sapiens]
          Length = 316

 Score =  632 bits (1630), Expect = 0.0
 Identities = 316/316 (100%), Positives = 316/316 (100%)

Query: 1   MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR 60
           MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR
Sbjct: 1   MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR 60

Query: 61  TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW 120
           TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW
Sbjct: 61  TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW 120

Query: 121 YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK 180
           YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK
Sbjct: 121 YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK 180

Query: 181 SSESLHGPRDFWSSSQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILC 240
           SSESLHGPRDFWSSSQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILC
Sbjct: 181 SSESLHGPRDFWSSSQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILC 240

Query: 241 QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE 300
           QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE
Sbjct: 241 QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE 300

Query: 301 LQQEKEELMQELSSLE 316
           LQQEKEELMQELSSLE
Sbjct: 301 LQQEKEELMQELSSLE 316


>gi|64762484 BRCA1/BRCA2-containing complex, subunit 3 isoform 2
           [Homo sapiens]
          Length = 291

 Score =  566 bits (1459), Expect = e-162
 Identities = 291/316 (92%), Positives = 291/316 (92%), Gaps = 25/316 (7%)

Query: 1   MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR 60
           MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR
Sbjct: 1   MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR 60

Query: 61  TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW 120
           TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW
Sbjct: 61  TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW 120

Query: 121 YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK 180
           YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK
Sbjct: 121 YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK 180

Query: 181 SSESLHGPRDFWSSSQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILC 240
           SSE                         YERIEIPIHIVPHVTIGKVCLESAVELPKILC
Sbjct: 181 SSE-------------------------YERIEIPIHIVPHVTIGKVCLESAVELPKILC 215

Query: 241 QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE 300
           QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE
Sbjct: 216 QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE 275

Query: 301 LQQEKEELMQELSSLE 316
           LQQEKEELMQELSSLE
Sbjct: 276 LQQEKEELMQELSSLE 291


>gi|5031981 proteasome 26S subunit, non-ATPase 14 [Homo sapiens]
          Length = 310

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 51/203 (25%)

Query: 6   VQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEK 65
           V   + V++ S A L  L H  +    EVMGL +GE  DD        YT          
Sbjct: 25  VDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDD--------YT---------- 66

Query: 66  VDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAER---------LAELTGRPMR 116
              VR++ + ++                P+  +  S EA           + + TGRP  
Sbjct: 67  ---VRVIDVFAM----------------PQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEM 107

Query: 117 VVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSI 176
           VVGWYHSHP    W S VD+ TQ  ++ + +  V ++    ++   +  G+V+   F+ I
Sbjct: 108 VVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVV----VDPIQSVKGKVVIDAFRLI 163

Query: 177 QAQKSSESLHGPRDFWSSSQHIS 199
            A       H PR   S+  H++
Sbjct: 164 NANMMVLG-HEPRQTTSNLGHLN 185


>gi|38027923 COP9 signalosome subunit 5 [Homo sapiens]
          Length = 334

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 27/136 (19%)

Query: 18  AFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVDAVRIVHIHSV 77
           A L  + HA S    EVMGL +G                        KVD   ++ + S 
Sbjct: 61  ALLKMVMHARSGGNLEVMGLMLG------------------------KVDGETMIIMDSF 96

Query: 78  IILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSHVDVR 137
            +     + +   + +  +  AA  E    A+  GR    +GWYHSHP    W S +DV 
Sbjct: 97  ALPVEGTETRVNAQAAAYEYMAAYIEN---AKQVGRLENAIGWYHSHPGYGCWLSGIDVS 153

Query: 138 TQAMYQMMDQGFVGLI 153
           TQ + Q   + FV ++
Sbjct: 154 TQMLNQQFQEPFVAVV 169


>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
          Length = 471

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 23/51 (45%), Positives = 29/51 (56%)

Query: 98  SAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQG 148
           +AA+ E E    L  R + +VGWYHSHPH    PS  D+  Q  YQ+  QG
Sbjct: 325 TAAAIEEEIYQSLFLRGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQG 375


>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
          Length = 451

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query: 113 RPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQG 148
           R + +VGWYHSHPH    PS  D+  Q  YQ+  QG
Sbjct: 290 RGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQG 325


>gi|148227842 Myb-like, SWIRM and MPN domains 1 [Homo sapiens]
          Length = 828

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 110 LTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQ-MMDQG---FVGLIFS 155
           L  R   V+GWYHSHP     PS  D+ TQA YQ    +G   F+G+I S
Sbjct: 644 LAVRGFSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVS 693


>gi|47132534 STAM binding protein [Homo sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.051
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 118 VGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFS 155
           +GW H+HP  T + S VD+ T   YQMM    V ++ S
Sbjct: 331 LGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCS 368


>gi|42519912 STAM binding protein [Homo sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.051
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 118 VGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFS 155
           +GW H+HP  T + S VD+ T   YQMM    V ++ S
Sbjct: 331 LGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCS 368


>gi|5453545 STAM binding protein [Homo sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.051
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 118 VGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFS 155
           +GW H+HP  T + S VD+ T   YQMM    V ++ S
Sbjct: 331 LGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCS 368


>gi|33147080 STAM binding protein-like 1 [Homo sapiens]
          Length = 436

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 118 VGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQ 177
           +GW H+HP  T + S VD+ T   YQ+M    + ++  C  + K+T   R+       + 
Sbjct: 343 LGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIV--CSPKHKDTGIFRLTNAGMLEVS 400

Query: 178 AQK 180
           A K
Sbjct: 401 ACK 403


>gi|4502395 beclin 1 [Homo sapiens]
          Length = 450

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 239 LCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHL 298
           LC+E  D       L  LD+   +      T+N C         L Q  ED  EQ Q  L
Sbjct: 136 LCEECTDTL-----LDQLDTQLNV------TENECQNYKRCLEILEQMNEDDSEQLQMEL 184

Query: 299 QELQQEKEELMQELSSLE 316
           +EL  E+E L+QEL  +E
Sbjct: 185 KELALEEERLIQELEDVE 202


>gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]
          Length = 971

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 12/186 (6%)

Query: 139 QAMYQMMDQGF---VGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKSSE-SLHGPRDFWSS 194
           Q M +  +QG     GLI S  ++D   +    L     S++  K +  ++ G  +    
Sbjct: 436 QDMVRKSEQGLGSAEGLIAS--LQDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQ 493

Query: 195 SQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLT 254
               +I   KEEE+  +++   H +       +  E +    ++  Q E+D    +  L 
Sbjct: 494 QHEETIAAMKEEEKL-KVDKMAHDLEIKWTENLRQECSKLREELRLQHEEDKKSAMSQLL 552

Query: 255 HLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQ----QEKEELMQ 310
            L    K      + K +   ++ +S  L Q LE +L Q+Q  LQ+LQ    QE++ L Q
Sbjct: 553 QLKDREKNAARDSWQKKVEDLLNQIS-LLKQNLEIQLSQSQTSLQQLQAQFTQERQRLTQ 611

Query: 311 ELSSLE 316
           EL  LE
Sbjct: 612 ELEELE 617


>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
          Length = 1140

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 12/186 (6%)

Query: 139 QAMYQMMDQGF---VGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKSSE-SLHGPRDFWSS 194
           Q M +  +QG     GLI S  ++D   +    L     S++  K +  ++ G  +    
Sbjct: 556 QDMVRKSEQGLGSAEGLIAS--LQDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQ 613

Query: 195 SQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLT 254
               +I   KEEE+  +++   H +       +  E +    ++  Q E+D    +  L 
Sbjct: 614 QHEETIAAMKEEEKL-KVDKMAHDLEIKWTENLRQECSKLREELRLQHEEDKKSAMSQLL 672

Query: 255 HLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQ----QEKEELMQ 310
            L    K      + K +   ++ +S  L Q LE +L Q+Q  LQ+LQ    QE++ L Q
Sbjct: 673 QLKDREKNAARDSWQKKVEDLLNQIS-LLKQNLEIQLSQSQTSLQQLQAQFTQERQRLTQ 731

Query: 311 ELSSLE 316
           EL  LE
Sbjct: 732 ELEELE 737


>gi|119120918 coiled-coil domain containing 64 [Homo sapiens]
          Length = 573

 Score = 31.6 bits (70), Expect = 0.96
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 287 LEDRLEQNQQHLQELQQEKEELMQELS 313
           L+D LE+ Q HL+E  +EK   +QELS
Sbjct: 177 LQDELERQQIHLREADREKSRAVQELS 203


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
            [Homo sapiens]
          Length = 8749

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 203  QKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDSVTKI 262
            Q   E  +++ +PI         K+C  SA E  K+L QE  D  + + SL+   +    
Sbjct: 1573 QSVSEFEDKLAVPI---------KIC-SSATETYKVL-QEHMDLCQALESLSSAITAFSA 1621

Query: 263  HNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSS 314
                V  ++ C Q +A      + +  R ++ Q  L+ L    + L +ELSS
Sbjct: 1622 SARKVVNRDSCVQEAAALQQQYEDILRRAKERQTALENLLAHWQRLEKELSS 1673


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
            [Homo sapiens]
          Length = 8797

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 203  QKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDSVTKI 262
            Q   E  +++ +PI         K+C  SA E  K+L QE  D  + + SL+   +    
Sbjct: 1566 QSVSEFEDKLAVPI---------KIC-SSATETYKVL-QEHMDLCQALESLSSAITAFSA 1614

Query: 263  HNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSS 314
                V  ++ C Q +A      + +  R ++ Q  L+ L    + L +ELSS
Sbjct: 1615 SARKVVNRDSCVQEAAALQQQYEDILRRAKERQTALENLLAHWQRLEKELSS 1666


>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
          Length = 1288

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 230 ESAVELPKILCQEEQDAYRRIH-SLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLE 288
           E  V+ P+ L +  Q AY  +H SL+  +++  I + +  T+ L         P++ +L 
Sbjct: 171 EGKVDFPEPLVKAHQQAYTYLHSSLSKYEAILCIIHQATQTRELLQ-------PMVSFLL 223

Query: 289 DRLEQNQQHLQELQQEKEELMQEL 312
              E+  Q L E+ ++ E L+QE+
Sbjct: 224 LCFEEISQLLGEISKDGEVLLQEV 247



 Score = 29.3 bits (64), Expect = 4.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 93  SPEQLSAASTEAERLAELTGRPMRVVGWYHSHP 125
           SPE      ++AE+   L  +P + + W+HS P
Sbjct: 933 SPEVKGGTWSQAEKATSLYRQPRKAIAWHHSGP 965


>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
          Length = 3677

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 229 LESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVS---GPLLQ 285
           L+  V+  K+L ++ +    R++SLTH+  V    +G   T  L  Q+  +      + +
Sbjct: 478 LKRQVQQHKVLQEDLEQEQVRVNSLTHMVVVVDESSGDHATAALEEQLKVLGDRWANICR 537

Query: 286 WLEDRLEQNQQHLQELQQEKEE 307
           W EDR    Q  L + Q+  EE
Sbjct: 538 WTEDRWVLLQDILLKWQRLTEE 559


>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
          Length = 3562

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 229 LESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVS---GPLLQ 285
           L+  V+  K+L ++ +    R++SLTH+  V    +G   T  L  Q+  +      + +
Sbjct: 363 LKRQVQQHKVLQEDLEQEQVRVNSLTHMVVVVDESSGDHATAALEEQLKVLGDRWANICR 422

Query: 286 WLEDRLEQNQQHLQELQQEKEE 307
           W EDR    Q  L + Q+  EE
Sbjct: 423 WTEDRWVLLQDILLKWQRLTEE 444


>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
          Length = 3681

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 229 LESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVS---GPLLQ 285
           L+  V+  K+L ++ +    R++SLTH+  V    +G   T  L  Q+  +      + +
Sbjct: 482 LKRQVQQHKVLQEDLEQEQVRVNSLTHMVVVVDESSGDHATAALEEQLKVLGDRWANICR 541

Query: 286 WLEDRLEQNQQHLQELQQEKEE 307
           W EDR    Q  L + Q+  EE
Sbjct: 542 WTEDRWVLLQDILLKWQRLTEE 563


>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
          Length = 3562

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 229 LESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVS---GPLLQ 285
           L+  V+  K+L ++ +    R++SLTH+  V    +G   T  L  Q+  +      + +
Sbjct: 363 LKRQVQQHKVLQEDLEQEQVRVNSLTHMVVVVDESSGDHATAALEEQLKVLGDRWANICR 422

Query: 286 WLEDRLEQNQQHLQELQQEKEE 307
           W EDR    Q  L + Q+  EE
Sbjct: 423 WTEDRWVLLQDILLKWQRLTEE 444


>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
          Length = 3685

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 229 LESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVS---GPLLQ 285
           L+  V+  K+L ++ +    R++SLTH+  V    +G   T  L  Q+  +      + +
Sbjct: 486 LKRQVQQHKVLQEDLEQEQVRVNSLTHMVVVVDESSGDHATAALEEQLKVLGDRWANICR 545

Query: 286 WLEDRLEQNQQHLQELQQEKEE 307
           W EDR    Q  L + Q+  EE
Sbjct: 546 WTEDRWVLLQDILLKWQRLTEE 567


>gi|28933465 syntaxin 12 [Homo sapiens]
          Length = 276

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 258 SVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSSL 315
           ++ +I   +   KNL SQ+          L++ L+Q Q    +L +E  EL++EL SL
Sbjct: 32  NIQRISQATAQIKNLMSQLGTKQDS--SKLQENLQQLQHSTNQLAKETNELLKELGSL 87


>gi|117553613 coiled-coil domain containing 151 [Homo sapiens]
          Length = 595

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 12/118 (10%)

Query: 201 EGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDAYRR--IHSLTHLDS 258
           E + E ER ER     H++         L+S   +   L  +E++  +R  ++ +  +  
Sbjct: 310 EKKLENERMERKTHREHLL---------LQSDDTIQDSLHAKEEELRQRWSMYQMEVIFG 360

Query: 259 VTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEKEELMQELSSLE 316
             K   G+  T +L  +  A  G     LE    +N+Q L  L+QEK++L +EL  L+
Sbjct: 361 KVKDATGTDETHSLVRRFLA-QGDTFAQLETLKSENEQTLVRLKQEKQQLQRELEDLK 417


>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
          Length = 1960

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 287 LEDRLEQNQQHLQELQQEKEELMQELSSLE 316
           LE R+E+ ++  Q LQ EK+++ Q +  LE
Sbjct: 920 LEARVEEEEERCQHLQAEKKKMQQNIQELE 949


>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
          Length = 1012

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 89  RVEIS-PEQLSAASTEAERLAELTGRPM------RVVGWYHSHPHITVWPSHVDVRTQ 139
           R E+S P++L+A    AER+A LT  P+       V   +H H HI    SH+ +  Q
Sbjct: 833 RPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHI---HSHLHLHQQ 887


>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 89   RVEIS-PEQLSAASTEAERLAELTGRPM------RVVGWYHSHPHITVWPSHVDVRTQ 139
            R E+S P++L+A    AER+A LT  P+       V   +H H HI    SH+ +  Q
Sbjct: 1387 RPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHI---HSHLHLHQQ 1441


>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 89   RVEIS-PEQLSAASTEAERLAELTGRPM------RVVGWYHSHPHITVWPSHVDVRTQ 139
            R E+S P++L+A    AER+A LT  P+       V   +H H HI    SH+ +  Q
Sbjct: 1387 RPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHI---HSHLHLHQQ 1441


>gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]
          Length = 841

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 11/26 (42%), Positives = 20/26 (76%)

Query: 286 WLEDRLEQNQQHLQELQQEKEELMQE 311
           W E RL++ ++ LQ+ QQE+EE +++
Sbjct: 524 WFERRLKEAEESLQQQQQEQEEALKQ 549


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,418,386
Number of Sequences: 37866
Number of extensions: 489923
Number of successful extensions: 3258
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3140
Number of HSP's gapped (non-prelim): 142
length of query: 316
length of database: 18,247,518
effective HSP length: 102
effective length of query: 214
effective length of database: 14,385,186
effective search space: 3078429804
effective search space used: 3078429804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.