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Search of human proteins with 13236528
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13236528 fukutin-related protein [Homo sapiens]
(495 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89941475 fukutin-related protein [Homo sapiens] 1005 0.0
gi|13236528 fukutin-related protein [Homo sapiens] 1005 0.0
gi|119395712 fukutin [Homo sapiens] 46 9e-05
gi|119395714 fukutin [Homo sapiens] 46 9e-05
gi|239753500 PREDICTED: hypothetical protein [Homo sapiens] 39 0.014
gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo ... 38 0.019
gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo ... 38 0.019
gi|226371735 iroquois homeobox 3 [Homo sapiens] 37 0.054
gi|46909600 a disintegrin and metalloproteinase domain 15 isofor... 35 0.16
gi|46909598 a disintegrin and metalloproteinase domain 15 isofor... 35 0.16
gi|46909596 a disintegrin and metalloproteinase domain 15 isofor... 35 0.16
gi|46909594 a disintegrin and metalloproteinase domain 15 isofor... 35 0.16
gi|46909592 a disintegrin and metalloproteinase domain 15 isofor... 35 0.16
gi|46909590 a disintegrin and metalloproteinase domain 15 isofor... 35 0.16
gi|148839294 Ca2+-dependent activator protein for secretion 2 is... 34 0.35
gi|4504217 guanylate cyclase 2D, membrane (retina-specific) [Hom... 32 1.7
gi|71274152 hypothetical protein LOC388939 [Homo sapiens] 32 1.7
gi|61966923 forkhead box B2 [Homo sapiens] 31 3.0
gi|157419140 laminin, gamma 2 isoform b precursor [Homo sapiens] 30 3.9
gi|157419138 laminin, gamma 2 isoform a precursor [Homo sapiens] 30 3.9
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 30 5.0
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 30 5.0
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 30 5.0
gi|21359951 RNA binding motif protein 42 [Homo sapiens] 30 5.0
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 30 6.6
gi|60460889 Myb protein P42POP [Homo sapiens] 30 6.6
gi|54873602 hypothetical protein LOC220382 [Homo sapiens] 30 6.6
gi|91208420 bassoon protein [Homo sapiens] 29 8.6
gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens] 29 8.6
gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 29 8.6
>gi|89941475 fukutin-related protein [Homo sapiens]
Length = 495
Score = 1005 bits (2598), Expect = 0.0
Identities = 495/495 (100%), Positives = 495/495 (100%)
Query: 1 MRLTRCQAALAAAITLNLLVLFYVSWLQHQPRNSRARGPRRASAAGPRVTVLVREFEAFD 60
MRLTRCQAALAAAITLNLLVLFYVSWLQHQPRNSRARGPRRASAAGPRVTVLVREFEAFD
Sbjct: 1 MRLTRCQAALAAAITLNLLVLFYVSWLQHQPRNSRARGPRRASAAGPRVTVLVREFEAFD 60
Query: 61 NAVPELVDSFLQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRPAAASRPETY 120
NAVPELVDSFLQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRPAAASRPETY
Sbjct: 61 NAVPELVDSFLQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRPAAASRPETY 120
Query: 121 VATEFVALVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPARCLALNVSLREWTA 180
VATEFVALVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPARCLALNVSLREWTA
Sbjct: 121 VATEFVALVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPARCLALNVSLREWTA 180
Query: 181 RYGAAPAAPRCDALDGDAVVLLRARDLFNLSAPLARPVGTSLFLQTALRGWAVQLLDLTF 240
RYGAAPAAPRCDALDGDAVVLLRARDLFNLSAPLARPVGTSLFLQTALRGWAVQLLDLTF
Sbjct: 181 RYGAAPAAPRCDALDGDAVVLLRARDLFNLSAPLARPVGTSLFLQTALRGWAVQLLDLTF 240
Query: 241 AAARQPPLATAHARWKAEREGRARRAALLRALGIRLVSWEGGRLEWFGCNKETTRCFGTV 300
AAARQPPLATAHARWKAEREGRARRAALLRALGIRLVSWEGGRLEWFGCNKETTRCFGTV
Sbjct: 241 AAARQPPLATAHARWKAEREGRARRAALLRALGIRLVSWEGGRLEWFGCNKETTRCFGTV 300
Query: 301 VGDTPAYLYEERWTPPCCLRALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWD 360
VGDTPAYLYEERWTPPCCLRALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWD
Sbjct: 301 VGDTPAYLYEERWTPPCCLRALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWD 360
Query: 361 YDVDLGIYLEDVGNCEQLRGAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPF 420
YDVDLGIYLEDVGNCEQLRGAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPF
Sbjct: 361 YDVDLGIYLEDVGNCEQLRGAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPF 420
Query: 421 YPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLPFAGFVAQAPNNYRRFLELKFGPGVIEN 480
YPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLPFAGFVAQAPNNYRRFLELKFGPGVIEN
Sbjct: 421 YPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLPFAGFVAQAPNNYRRFLELKFGPGVIEN 480
Query: 481 PQYPNPALLSLTGSG 495
PQYPNPALLSLTGSG
Sbjct: 481 PQYPNPALLSLTGSG 495
>gi|13236528 fukutin-related protein [Homo sapiens]
Length = 495
Score = 1005 bits (2598), Expect = 0.0
Identities = 495/495 (100%), Positives = 495/495 (100%)
Query: 1 MRLTRCQAALAAAITLNLLVLFYVSWLQHQPRNSRARGPRRASAAGPRVTVLVREFEAFD 60
MRLTRCQAALAAAITLNLLVLFYVSWLQHQPRNSRARGPRRASAAGPRVTVLVREFEAFD
Sbjct: 1 MRLTRCQAALAAAITLNLLVLFYVSWLQHQPRNSRARGPRRASAAGPRVTVLVREFEAFD 60
Query: 61 NAVPELVDSFLQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRPAAASRPETY 120
NAVPELVDSFLQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRPAAASRPETY
Sbjct: 61 NAVPELVDSFLQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRPAAASRPETY 120
Query: 121 VATEFVALVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPARCLALNVSLREWTA 180
VATEFVALVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPARCLALNVSLREWTA
Sbjct: 121 VATEFVALVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPARCLALNVSLREWTA 180
Query: 181 RYGAAPAAPRCDALDGDAVVLLRARDLFNLSAPLARPVGTSLFLQTALRGWAVQLLDLTF 240
RYGAAPAAPRCDALDGDAVVLLRARDLFNLSAPLARPVGTSLFLQTALRGWAVQLLDLTF
Sbjct: 181 RYGAAPAAPRCDALDGDAVVLLRARDLFNLSAPLARPVGTSLFLQTALRGWAVQLLDLTF 240
Query: 241 AAARQPPLATAHARWKAEREGRARRAALLRALGIRLVSWEGGRLEWFGCNKETTRCFGTV 300
AAARQPPLATAHARWKAEREGRARRAALLRALGIRLVSWEGGRLEWFGCNKETTRCFGTV
Sbjct: 241 AAARQPPLATAHARWKAEREGRARRAALLRALGIRLVSWEGGRLEWFGCNKETTRCFGTV 300
Query: 301 VGDTPAYLYEERWTPPCCLRALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWD 360
VGDTPAYLYEERWTPPCCLRALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWD
Sbjct: 301 VGDTPAYLYEERWTPPCCLRALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWD 360
Query: 361 YDVDLGIYLEDVGNCEQLRGAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPF 420
YDVDLGIYLEDVGNCEQLRGAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPF
Sbjct: 361 YDVDLGIYLEDVGNCEQLRGAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPF 420
Query: 421 YPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLPFAGFVAQAPNNYRRFLELKFGPGVIEN 480
YPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLPFAGFVAQAPNNYRRFLELKFGPGVIEN
Sbjct: 421 YPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLPFAGFVAQAPNNYRRFLELKFGPGVIEN 480
Query: 481 PQYPNPALLSLTGSG 495
PQYPNPALLSLTGSG
Sbjct: 481 PQYPNPALLSLTGSG 495
>gi|119395712 fukutin [Homo sapiens]
Length = 461
Score = 45.8 bits (107), Expect = 9e-05
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 320 RALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWDYDVDLGIYLEDVGNCEQLR 379
++ +E + L GV +WL G+ LG R +IIP+ DVDLGI+++D + L
Sbjct: 275 KSAKELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILA 334
Query: 380 GAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPFY 421
+AG + + E ++E + + + + +D++ FY
Sbjct: 335 FQDAGLPLKHKFGKVEDSLE-----LSFQGKDDVKLDVFFFY 371
>gi|119395714 fukutin [Homo sapiens]
Length = 461
Score = 45.8 bits (107), Expect = 9e-05
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 320 RALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWDYDVDLGIYLEDVGNCEQLR 379
++ +E + L GV +WL G+ LG R +IIP+ DVDLGI+++D + L
Sbjct: 275 KSAKELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILA 334
Query: 380 GAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPFY 421
+AG + + E ++E + + + + +D++ FY
Sbjct: 335 FQDAGLPLKHKFGKVEDSLE-----LSFQGKDDVKLDVFFFY 371
>gi|239753500 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 38.5 bits (88), Expect = 0.014
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 71 LQQDPAQPVVVAADTLPYPPLALP---RIPNVRLALLQPALDRPAAASRPETYVATEFVA 127
L+ A P ++ +PP LP R+P R A +PA PA P A +
Sbjct: 4 LRASGASPSPRSSPARSHPPAPLPFPERLP--RPAAKEPAARTPARQVFPAAASAGREGS 61
Query: 128 LVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPAR 167
PDGAR PGL + + R V AP +PAR
Sbjct: 62 AAPDGARGSTPGLAASRELSPPPRAPRTVPAPHPRLSPAR 101
>gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo
sapiens]
Length = 213
Score = 38.1 bits (87), Expect = 0.019
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 71 LQQDPAQPVVVAADTLPYPPLALP---RIPNVRLALLQPALDRPAAASRPETYVATEFVA 127
L+ A P ++ +PP LP R+P R A +PA PA P A +
Sbjct: 4 LRASGASPRPRSSPARSHPPAPLPFPERLP--RPAAKEPAARTPARQVFPAAASAGREGS 61
Query: 128 LVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPAR 167
PDGAR PGL + + R V AP +PAR
Sbjct: 62 AAPDGARGSTPGLAASRELSPPPRAPRTVPAPHPRLSPAR 101
>gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo
sapiens]
Length = 213
Score = 38.1 bits (87), Expect = 0.019
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 71 LQQDPAQPVVVAADTLPYPPLALP---RIPNVRLALLQPALDRPAAASRPETYVATEFVA 127
L+ A P ++ +PP LP R+P R A +PA PA P A +
Sbjct: 4 LRASGASPRPRSSPARSHPPAPLPFPERLP--RPAAKEPAARTPARQVFPAAASAGREGS 61
Query: 128 LVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPAR 167
PDGAR PGL + + R V AP +PAR
Sbjct: 62 AAPDGARGSTPGLAASRELSPPPRAPRTVPAPHPRLSPAR 101
>gi|226371735 iroquois homeobox 3 [Homo sapiens]
Length = 501
Score = 36.6 bits (83), Expect = 0.054
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 78 PVVVAADTLPYPPLALPRIPNVRLALLQPALDRPAAASRPETYVATEFVALVPDGA---- 133
PV VA+ +LP PP++L P AL +P S ET + + P GA
Sbjct: 316 PVAVASPSLPSPPVSLD--PCAPAPAPASALQKPKIWSLAETATSPDNPRRSPPGAGGSP 373
Query: 134 --RAEAPGLLERMVEALRAGSARLVAAPV 160
A AP L+ A A + RLV+AP+
Sbjct: 374 PGAAVAPSALQLSPAAAAAAAHRLVSAPL 402
>gi|46909600 a disintegrin and metalloproteinase domain 15 isoform 6
preproprotein [Homo sapiens]
Length = 863
Score = 35.0 bits (79), Expect = 0.16
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 283 RLEWFGCNKETTRCFGTVVGDTPAYLY-EERWTPPCCLRALRETARYVVG---------V 332
R++ G + ++C G V D+ + Y EE W PP C L+ T+ G V
Sbjct: 648 RVDLLGAQECRSKCHGHGVCDSNRHCYCEEGWAPPDCTTQLKATSSLTTGLLLSLLVLLV 707
Query: 333 LEAAGVRYW 341
L G YW
Sbjct: 708 LVMLGASYW 716
>gi|46909598 a disintegrin and metalloproteinase domain 15 isoform 5
preproprotein [Homo sapiens]
Length = 862
Score = 35.0 bits (79), Expect = 0.16
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 283 RLEWFGCNKETTRCFGTVVGDTPAYLY-EERWTPPCCLRALRETARYVVG---------V 332
R++ G + ++C G V D+ + Y EE W PP C L+ T+ G V
Sbjct: 648 RVDLLGAQECRSKCHGHGVCDSNRHCYCEEGWAPPDCTTQLKATSSLTTGLLLSLLVLLV 707
Query: 333 LEAAGVRYW 341
L G YW
Sbjct: 708 LVMLGASYW 716
>gi|46909596 a disintegrin and metalloproteinase domain 15 isoform 4
preproprotein [Homo sapiens]
Length = 838
Score = 35.0 bits (79), Expect = 0.16
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 283 RLEWFGCNKETTRCFGTVVGDTPAYLY-EERWTPPCCLRALRETARYVVG---------V 332
R++ G + ++C G V D+ + Y EE W PP C L+ T+ G V
Sbjct: 648 RVDLLGAQECRSKCHGHGVCDSNRHCYCEEGWAPPDCTTQLKATSSLTTGLLLSLLVLLV 707
Query: 333 LEAAGVRYW 341
L G YW
Sbjct: 708 LVMLGASYW 716
>gi|46909594 a disintegrin and metalloproteinase domain 15 isoform 3
preproprotein [Homo sapiens]
Length = 839
Score = 35.0 bits (79), Expect = 0.16
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 283 RLEWFGCNKETTRCFGTVVGDTPAYLY-EERWTPPCCLRALRETARYVVG---------V 332
R++ G + ++C G V D+ + Y EE W PP C L+ T+ G V
Sbjct: 648 RVDLLGAQECRSKCHGHGVCDSNRHCYCEEGWAPPDCTTQLKATSSLTTGLLLSLLVLLV 707
Query: 333 LEAAGVRYW 341
L G YW
Sbjct: 708 LVMLGASYW 716
>gi|46909592 a disintegrin and metalloproteinase domain 15 isoform 1
preproprotein [Homo sapiens]
Length = 772
Score = 35.0 bits (79), Expect = 0.16
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 283 RLEWFGCNKETTRCFGTVVGDTPAYLY-EERWTPPCCLRALRETARYVVG---------V 332
R++ G + ++C G V D+ + Y EE W PP C L+ T+ G V
Sbjct: 648 RVDLLGAQECRSKCHGHGVCDSNRHCYCEEGWAPPDCTTQLKATSSLTTGLLLSLLVLLV 707
Query: 333 LEAAGVRYW 341
L G YW
Sbjct: 708 LVMLGASYW 716
>gi|46909590 a disintegrin and metalloproteinase domain 15 isoform 2
preproprotein [Homo sapiens]
Length = 814
Score = 35.0 bits (79), Expect = 0.16
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 283 RLEWFGCNKETTRCFGTVVGDTPAYLY-EERWTPPCCLRALRETARYVVG---------V 332
R++ G + ++C G V D+ + Y EE W PP C L+ T+ G V
Sbjct: 648 RVDLLGAQECRSKCHGHGVCDSNRHCYCEEGWAPPDCTTQLKATSSLTTGLLLSLLVLLV 707
Query: 333 LEAAGVRYW 341
L G YW
Sbjct: 708 LVMLGASYW 716
>gi|148839294 Ca2+-dependent activator protein for secretion 2
isoform a [Homo sapiens]
Length = 1296
Score = 33.9 bits (76), Expect = 0.35
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 49 VTVLVREFEAFDNAVPELVDSFLQQDPAQPVVVAADTLPYP--------PLALPRIPNVR 100
V ++VR + ++++ + + +Q+ QPV A++LP PL LP+IPN+
Sbjct: 932 VPLVVRYVDLMESSIAQSIHRGFEQETWQPVKNIANSLPNVALPKVPSLPLNLPQIPNIS 991
Query: 101 LALLQPAL 108
A P+L
Sbjct: 992 TASWMPSL 999
>gi|4504217 guanylate cyclase 2D, membrane (retina-specific) [Homo
sapiens]
Length = 1103
Score = 31.6 bits (70), Expect = 1.7
Identities = 60/200 (30%), Positives = 75/200 (37%), Gaps = 49/200 (24%)
Query: 83 ADTLPYPPLALPRIPNVRLALL--QPALD--------------------RPAAASR---- 116
A +LP P ALPR+P + L LL PAL RP A+R
Sbjct: 23 APSLPRLPRALPRLPLLLLLLLLQPPALSAVFTVGVLGPWACDPIFSRARPDLAARLAAA 82
Query: 117 -----PETYVATEF-VALVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPARCLA 170
P F VAL+P+ R PG L + AL S + A PA LA
Sbjct: 83 RLNRDPGLAGGPRFEVALLPEPCR--TPGSLGAVSSALARVSGLVGPVNPAACRPAELLA 140
Query: 171 LNVSLR------EWTARYG-AAPA-APRCDALDGDAVVLLRA---RDLFNLSAPLARPVG 219
+ WT G APA P DAL LLRA + ++AP V
Sbjct: 141 EEAGIALVPWGCPWTQAEGTTAPAVTPAADAL----YALLRAFGWARVALVTAPQDLWVE 196
Query: 220 TSLFLQTALRGWAVQLLDLT 239
L TALR + + +T
Sbjct: 197 AGRSLSTALRARGLPVASVT 216
>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
Length = 1288
Score = 31.6 bits (70), Expect = 1.7
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 30 QPRNSRARGPRRASAAGPRVTVLVREFEAFDNAVPELVDSFLQQDPAQPVVVAADTLPYP 89
+PR SR R P A P T V + + ++P PAQP A T P P
Sbjct: 979 RPRQSRERSPPVGRKASPTRTHWVPQADKRRRSLPS------SYRPAQPSPSAVQTPPSP 1032
Query: 90 PLALPRI---PNVRLALL---QPALDRPAAASRP 117
P++ PR+ P + QP L P S P
Sbjct: 1033 PVS-PRVLSPPTTKRRTSPPHQPKLPNPPPESAP 1065
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 30.8 bits (68), Expect = 3.0
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 33 NSRARGPRRASAAGPRVTVLVREFEAFDNAVPELVDSFLQQDPAQPVVVAADTLPYPPLA 92
+S A A+AAG V E+ AF V L S Q PA PV + P A
Sbjct: 321 DSVAAAAAAAAAAGVPVGP---EYGAFGVPVKSLCHSASQSLPAMPVPIK------PTPA 371
Query: 93 LPRIPNVRLALLQPALDRPAAASRP 117
LP + + LQP L PAA+ +P
Sbjct: 372 LPPV-----SALQPGLTVPAASQQP 391
>gi|157419140 laminin, gamma 2 isoform b precursor [Homo sapiens]
Length = 1111
Score = 30.4 bits (67), Expect = 3.9
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 412 HLHVDLWPFYPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLPFAGFVAQAPNNYRRFLEL 471
H VD W RNG K W QDV L P+ + A F+ +Y + L
Sbjct: 212 HQDVDGWKAVQRNGSPAKLQWSQRHQDVFSSAQRLDPVYFVAPAKFLGNQQVSYGQ--SL 269
Query: 472 KFGPGVIENPQYPNPALLSLTGSG 495
F V ++P+ + L G+G
Sbjct: 270 SFDYRVDRGGRHPSAHDVILEGAG 293
>gi|157419138 laminin, gamma 2 isoform a precursor [Homo sapiens]
Length = 1193
Score = 30.4 bits (67), Expect = 3.9
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 412 HLHVDLWPFYPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLPFAGFVAQAPNNYRRFLEL 471
H VD W RNG K W QDV L P+ + A F+ +Y + L
Sbjct: 212 HQDVDGWKAVQRNGSPAKLQWSQRHQDVFSSAQRLDPVYFVAPAKFLGNQQVSYGQ--SL 269
Query: 472 KFGPGVIENPQYPNPALLSLTGSG 495
F V ++P+ + L G+G
Sbjct: 270 SFDYRVDRGGRHPSAHDVILEGAG 293
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 30.0 bits (66), Expect = 5.0
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 77 QPVVVAADTLPYP--PLALPRIPNVRLALLQPALDRPAAASRPETYVATEFVALVPDGAR 134
QP V A P P P+A + + P +PA A++P VA + A+ P A
Sbjct: 2696 QPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKP---VAAKPAAVRPPAAA 2752
Query: 135 AEAPGLLERMVEALRAGSARLVAAPVATANPARCLALNVSLREWT 179
A P + E R +A+ A AT P ++ V + E T
Sbjct: 2753 AAKP--VATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEIT 2795
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 30.0 bits (66), Expect = 5.0
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 77 QPVVVAADTLPYP--PLALPRIPNVRLALLQPALDRPAAASRPETYVATEFVALVPDGAR 134
QP V A P P P+A + + P +PA A++P VA + A+ P A
Sbjct: 2902 QPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKP---VAAKPAAVRPPAAA 2958
Query: 135 AEAPGLLERMVEALRAGSARLVAAPVATANPARCLALNVSLREWT 179
A P + E R +A+ A AT P ++ V + E T
Sbjct: 2959 AAKP--VATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEIT 3001
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 30.0 bits (66), Expect = 5.0
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 77 QPVVVAADTLPYP--PLALPRIPNVRLALLQPALDRPAAASRPETYVATEFVALVPDGAR 134
QP V A P P P+A + + P +PA A++P VA + A+ P A
Sbjct: 2295 QPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKP---VAAKPAAVRPPAAA 2351
Query: 135 AEAPGLLERMVEALRAGSARLVAAPVATANPARCLALNVSLREWT 179
A P + E R +A+ A AT P ++ V + E T
Sbjct: 2352 AAKP--VATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEIT 2394
>gi|21359951 RNA binding motif protein 42 [Homo sapiens]
Length = 480
Score = 30.0 bits (66), Expect = 5.0
Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 18/144 (12%)
Query: 35 RARGPRRASAAGPRVTVLVREFEAFDNAVPELVDSFLQQDPAQPVVVAADTLPYPPLA-L 93
RA ++AAGPR L +A LV L P P+++ PP+A
Sbjct: 168 RADSALSSAAAGPRPMALRPPHQA-------LVGPPLPGPPGPPMML-------PPMARA 213
Query: 94 PRIPNVRLALLQPALDRPAAASRPETYVATEFVALVPDGARAEAPGLLERMVEALRAGSA 153
P P +A L+P L+ PAA E + + A A LE A+ G+
Sbjct: 214 PGPPLGSMAALRPPLEEPAAPR--ELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAG 271
Query: 154 RLVAAPVATANPARCLALNVSLRE 177
A P A P+ LAL + L E
Sbjct: 272 GAPAGP-AVIGPSLPLALAMPLPE 294
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 29.6 bits (65), Expect = 6.6
Identities = 21/65 (32%), Positives = 25/65 (38%)
Query: 53 VREFEAFDNAVPELVDSFLQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRPA 112
VR+ A P S L PA P LP PLA P +P+ P RP
Sbjct: 4903 VRQLSAPPPEEPSPPPSPLAPSPASPPTEPLVELPTEPLAEPPVPSPLPLASSPESARPK 4962
Query: 113 AASRP 117
+RP
Sbjct: 4963 PRARP 4967
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 29.6 bits (65), Expect = 6.6
Identities = 24/82 (29%), Positives = 34/82 (41%)
Query: 77 QPVVVAADTLPYPPLALPRIPNVRLALLQPALDRPAAASRPETYVATEFVALVPDGARAE 136
QPV + L PP A P P LA + P+ P RP ++ +L A+ E
Sbjct: 209 QPVQLPRLALSPPPPAPPLPPPPPLAQVAPSPPSPPPPPRPPPTLSASDPSLDFLRAQQE 268
Query: 137 APGLLERMVEALRAGSARLVAA 158
+ + LR G A+L A
Sbjct: 269 TANAIRELAGTLRQGLAKLSEA 290
>gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
Length = 426
Score = 29.6 bits (65), Expect = 6.6
Identities = 49/158 (31%), Positives = 55/158 (34%), Gaps = 19/158 (12%)
Query: 75 PAQPVVVAADTLPYPPLALPRIPNV------RLALLQPALDRPAAASRPETYVATEFVAL 128
P P AADT PLA P P V + A + A AAAS +A F +L
Sbjct: 113 PGPPSPSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSL 172
Query: 129 --VPDGAR-------AEAPGLLERMVEALR---AGSARLVAAPVATANPARCLALNVSLR 176
VP GA A A GL AG A A P A P R L S
Sbjct: 173 RHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFF 232
Query: 177 EWTARYGAAPAAPR-CDALDGDAVVLLRARDLFNLSAP 213
+R G P D GD A + F L P
Sbjct: 233 TEPSRAGGGGCGPSGPDVSLGDLEKGAEAVEFFELLGP 270
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 29.3 bits (64), Expect = 8.6
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 31 PRNSRARGPRRASAAGPRVTVLVREFEAFDNAVPELVDSFLQQDPAQPVVV----AADTL 86
PR +RA+GP A GPR T+ VDS Q+ P V + T
Sbjct: 109 PRETRAQGPAGQEADGPRRTL--------------QVDSRTQRSGRSPSVSPDRGSTPTS 154
Query: 87 PYPPLALPRIPNVRLALLQPALDRPAAASRPETYVATE 124
PY + +P+ L + D + S+P T+
Sbjct: 155 PYSVPQIAPLPSSTLCPICKTSDLTSTPSQPNFNTCTQ 192
>gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens]
Length = 739
Score = 29.3 bits (64), Expect = 8.6
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 41 RASAAGPRVTVLVREFEAFDNAVPELVDSFLQQDPAQPVVVAADT---LPYPPLALPRIP 97
RA+AA R T + + A P++ + QP AA+ P PPLA P+
Sbjct: 118 RAAAAAAR-TAFSQVVASHRVATPQV-----SGEDTQPTTYAAEAQGPTPEPPLASPQTS 171
Query: 98 NVRLALLQPALDRPAAASRPET-YVATEFVALVPDGARAEAPGLLERMVEALRAGSARL 155
+ + A + PA +++ +T A E P A A + R V+A R +A L
Sbjct: 172 QMLVTSKMAAPEAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFL 230
>gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 29.3 bits (64), Expect = 8.6
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 41 RASAAGPRVTVLVREFEAFDNAVPELVDSFLQQDPAQPVVVAADT---LPYPPLALPRIP 97
RA+AA R T + + A P++ + QP AA+ P PPLA P+
Sbjct: 118 RAAAAAAR-TAFSQVVASHRVATPQV-----SGEDTQPTTYAAEAQGPTPEPPLASPQTS 171
Query: 98 NVRLALLQPALDRPAAASRPET-YVATEFVALVPDGARAEAPGLLERMVEALRAGSARL 155
+ + A + PA +++ +T A E P A A + R V+A R +A L
Sbjct: 172 QMLVTSKMAAPEAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFL 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,239,135
Number of Sequences: 37866
Number of extensions: 948948
Number of successful extensions: 2208
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2194
Number of HSP's gapped (non-prelim): 46
length of query: 495
length of database: 18,247,518
effective HSP length: 106
effective length of query: 389
effective length of database: 14,233,722
effective search space: 5536917858
effective search space used: 5536917858
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.