Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FKRP Sequence: fasta or formatted (495aa) NCBI GI: 89941475
Description:

fukutin-related protein

Referenced in:

Protein Glycosylation
Muscle

Other entries for this name:
alt mRNA [495aa] fukutin-related protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         71           3
 C cysteine            1.6          8           2
 D aspartate           4.6         23           1
 E glutamate           6.1         30           2
 F phenylalanine       4.0         20           2
 G glycine             6.9         34           2
 H histidine           1.4          7           1
 I isoleucine          1.4          7           2
 K lysine              1.0          5           1
 L leucine            12.9         64           2
 M methionine          0.6          3           1
 N asparagine          3.0         15           2
 P proline             7.9         39           2
 Q glutamine           3.2         16           2
 R arginine            9.7         48           2
 S serine              3.2         16           1
 T threonine           4.2         21           2
 V valine              8.5         42           3
 W tryptophan          2.4         12           1
 Y tyrosine            2.8         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fukutin-related protein 
FKRP                  1.000   fukutin-related protein 
FKTN                  0.021   fukutin 
FKTN                  0.021   fukutin 
LOC100293980          0.014   PREDICTED: hypothetical protein 
LOC100290741          0.013   PREDICTED: hypothetical protein XP_002346521 
LOC100288445          0.013   PREDICTED: hypothetical protein XP_002342359 
IRX3                  0.012   iroquois homeobox 3 
ADAM15                0.010   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.010   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.010   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.010   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.010   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.010   a disintegrin and metalloproteinase domain 15 isofor...
CADPS2                0.009   Ca2+-dependent activator protein for secretion 2 is...
GUCY2D                0.007   guanylate cyclase 2D, membrane (retina-specific) [Hom...
C2orf71               0.007   hypothetical protein LOC388939 
FOXB2                 0.006   forkhead box B2 
LAMC2                 0.005   laminin, gamma 2 isoform b precursor 
LAMC2                 0.005   laminin, gamma 2 isoform a precursor 
COL6A3                0.005   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.005   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.005   alpha 3 type VI collagen isoform 4 precursor 
RBM42                 0.005   RNA binding motif protein 42 
MLL2                  0.005   myeloid/lymphoid or mixed-lineage leukemia 2 
MYPOP                 0.005   Myb protein P42POP 
FAM181B               0.005   hypothetical protein LOC220382 
BSN                   0.004   bassoon protein 
MAGED4B               0.004   melanoma antigen family D, 4B isoform 2 
MAGED4B               0.004   melanoma antigen family D, 4B isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press