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Search of human proteins with 13128998
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13128998 sodium channel modifier 1 [Homo sapiens]
(230 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13128998 sodium channel modifier 1 [Homo sapiens] 474 e-134
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 39 0.004
gi|27437042 colony stimulating factor 3 receptor isoform b precu... 35 0.041
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ... 35 0.054
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 35 0.054
gi|4557719 DNA ligase I [Homo sapiens] 35 0.070
gi|71040096 Rho GTPase activating protein 30 isoform 2 [Homo sap... 35 0.070
gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo sap... 35 0.070
gi|169218206 PREDICTED: similar to hCG2042704 [Homo sapiens] 34 0.12
gi|41281612 zinc finger protein 828 [Homo sapiens] 33 0.16
gi|13540569 sphingosine-1-phosphate phosphatase 1 [Homo sapiens] 33 0.20
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 33 0.20
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 33 0.20
gi|239747816 PREDICTED: upstream binding transcription factor, R... 33 0.20
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 33 0.20
gi|239741668 PREDICTED: upstream binding transcription factor, R... 33 0.20
gi|169163306 PREDICTED: upstream binding transcription factor, R... 33 0.20
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 33 0.20
gi|221316586 BSD domain containing 1 isoform d [Homo sapiens] 33 0.20
gi|221316584 BSD domain containing 1 isoform c [Homo sapiens] 33 0.20
gi|221316581 BSD domain containing 1 isoform a [Homo sapiens] 33 0.20
gi|221316578 BSD domain containing 1 isoform b [Homo sapiens] 33 0.20
gi|56711322 ring finger protein 43 [Homo sapiens] 33 0.20
gi|153792780 additional sex combs like 2 [Homo sapiens] 33 0.27
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 32 0.35
gi|239753269 PREDICTED: upstream binding transcription factor, R... 32 0.35
gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens] 32 0.35
gi|239741686 PREDICTED: upstream binding transcription factor, R... 32 0.35
gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens] 32 0.35
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 32 0.35
>gi|13128998 sodium channel modifier 1 [Homo sapiens]
Length = 230
Score = 474 bits (1220), Expect = e-134
Identities = 230/230 (100%), Positives = 230/230 (100%)
Query: 1 MSFKREGDDWSQLNVLKKRRVGDLLASYIPEDEALMLRDGRFACAICPHRPVLDTLAMLT 60
MSFKREGDDWSQLNVLKKRRVGDLLASYIPEDEALMLRDGRFACAICPHRPVLDTLAMLT
Sbjct: 1 MSFKREGDDWSQLNVLKKRRVGDLLASYIPEDEALMLRDGRFACAICPHRPVLDTLAMLT 60
Query: 61 AHRAGKKHLSSLQLFYGKKQPGKERKQNPKHQNELRREETKAEAPLLTQTRLITQSALHR 120
AHRAGKKHLSSLQLFYGKKQPGKERKQNPKHQNELRREETKAEAPLLTQTRLITQSALHR
Sbjct: 61 AHRAGKKHLSSLQLFYGKKQPGKERKQNPKHQNELRREETKAEAPLLTQTRLITQSALHR 120
Query: 121 APHYNSCCRRKYRPEAPGPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPA 180
APHYNSCCRRKYRPEAPGPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPA
Sbjct: 121 APHYNSCCRRKYRPEAPGPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPA 180
Query: 181 PMSPTRRRALDHYLTLRSSGWIPDGRGRWVKDENVEFDSDEEEPPDLPLD 230
PMSPTRRRALDHYLTLRSSGWIPDGRGRWVKDENVEFDSDEEEPPDLPLD
Sbjct: 181 PMSPTRRRALDHYLTLRSSGWIPDGRGRWVKDENVEFDSDEEEPPDLPLD 230
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 38.9 bits (89), Expect = 0.004
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 78 KKQPGKERKQNPKHQNELRREET---KAEAPLLTQTRLITQSALHRAPHY----NSCCRR 130
KK+ + ++N K ++ L RE + + P + RL +A +P +S
Sbjct: 414 KKEKKDKERENEKEKSALARERSLKKRQSLPASPRARLSASTASELSPKSKARPSSPSTS 473
Query: 131 KYRPEAP----GPSVSLSPMPPS---EVKLQSGKISREPEPAAGPQAEESATVSAPAPMS 183
+RP +P GP +L P PPS G++ R+ E A+ES + + P S
Sbjct: 474 WHRPASPCPSPGPGHTLPPKPPSPRGTTASPKGRVRRKEE------AKESPSAAGPEDKS 527
Query: 184 PTRRRA 189
++RRA
Sbjct: 528 QSKRRA 533
Score = 29.6 bits (65), Expect = 2.3
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 134 PEAPGPSVSLSPMPPSEVKLQSGKISREP-EPAAGPQ-AEESATVSAPAP 181
PE+P V P PP E S SR P PA GP+ A S P+P
Sbjct: 68 PESPSGQVGPRPAPPQEESPSSEAKSRGPTPPAMGPRDARPPRRSSQPSP 117
Score = 27.7 bits (60), Expect = 8.6
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 18/123 (14%)
Query: 80 QPGKERKQNPKHQNELRREETKAEAPLLTQTRLITQSALHRAPHYNSCCRRKYRPEAPGP 139
+P R + +RR+E E+P +QS + S P +P P
Sbjct: 493 KPPSPRGTTASPKGRVRRKEEAKESPSAAGPEDKSQSKRRASNEKESAA-----PASPAP 547
Query: 140 SVSLSP--------MPPSEVKLQSGKISREPEPA-----AGPQAEESATVSAPAPMSPTR 186
S + SP PP+E + ++ P PA + P A + A ++ R
Sbjct: 548 SPAPSPTPAPPQKEQPPAETPTDAAVLTSPPAPAPPVTPSKPMAGTTDREEATRLLAEKR 607
Query: 187 RRA 189
R+A
Sbjct: 608 RQA 610
>gi|27437042 colony stimulating factor 3 receptor isoform b
precursor [Homo sapiens]
Length = 769
Score = 35.4 bits (80), Expect = 0.041
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 14/129 (10%)
Query: 81 PGKERKQNPKHQNELRREETKAEAPLLTQTRLITQSALHRAPHYNSCCRRKYRPEAPGPS 140
P R +P Q R + ++ +T R + R C R P P+
Sbjct: 655 PALARHPSPSSQCWRRMKRSRCPGSPITAQRPVASPLWSRP----MCSRGTQEQFPPSPN 710
Query: 141 VSLSPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTRRRALDHYLTLRSSG 200
SL+P ++ G A PQA+ T+SA P+SP+ R + +R+SG
Sbjct: 711 PSLAPA----IRSFMGSCW------AAPQAQGQGTISAVTPLSPSWRASPPAPSPMRTSG 760
Query: 201 WIPDGRGRW 209
P G W
Sbjct: 761 SRPAPWGPW 769
>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
sapiens]
Length = 1723
Score = 35.0 bits (79), Expect = 0.054
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 133 RPEAPGPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTRRRALD 191
+PEA G P PP V+ + S P+PA P+ EE + P+P S +R+ +D
Sbjct: 833 QPEASGSWGGPPPPPPGNVRPSNSSWSSGPQPAT-PKDEEPSGWEEPSPQSISRKMDID 890
>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
sapiens]
Length = 1833
Score = 35.0 bits (79), Expect = 0.054
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 133 RPEAPGPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTRRRALD 191
+PEA G P PP V+ + S P+PA P+ EE + P+P S +R+ +D
Sbjct: 833 QPEASGSWGGPPPPPPGNVRPSNSSWSSGPQPAT-PKDEEPSGWEEPSPQSISRKMDID 890
>gi|4557719 DNA ligase I [Homo sapiens]
Length = 919
Score = 34.7 bits (78), Expect = 0.070
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 14/163 (8%)
Query: 71 SLQLFYGKKQPGKERKQNPKHQNELRREETKAEAPLLTQTRLITQS-ALHRAPHYNSCCR 129
S+ F+ K+ GK +K + N R E +A L ++++S + + P +
Sbjct: 4 SIMSFFHPKKEGKAKKPEKEASNSSRETEPPPKAALKEWNGVVSESDSPVKRPGRKAA-- 61
Query: 130 RKYRPEAPGPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPT---R 186
R E +LSP + L ++S P PA P+ S + ++P SP+ +
Sbjct: 62 RVLGSEGEEEDEALSPAKGQKPALDCSQVS-PPRPATSPENNASLSDTSPMDSSPSGIPK 120
Query: 187 RRALDHYLTLRSSGWIPDGRGRWVKDENVEF----DSDEEEPP 225
RR L R+ I + +DE+ E + +EEE P
Sbjct: 121 RRTARKQLPKRT---IQEVLEEQSEDEDREAKRKKEEEEEETP 160
>gi|71040096 Rho GTPase activating protein 30 isoform 2 [Homo
sapiens]
Length = 890
Score = 34.7 bits (78), Expect = 0.070
Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 18/123 (14%)
Query: 112 LITQSALHRAPHYNSCCRRKYRPE---APGPSVSLSPMPPSEVKLQSGKISREPEPAAGP 168
+I+ +L R C ++RP PGP L P PP E E PA+ P
Sbjct: 434 IISNVSLARLTRGLECPALQHRPSPASGPGPGPGLGPGPPDE--------KLEASPASSP 485
Query: 169 QAEESATVSAPAPMSPTRRRALDHYLTLRSSG-----WI--PDGRGRWVKDENVEFDSDE 221
A+ APA + D + L S W+ DG + F E
Sbjct: 486 LADSGPDDLAPALEDSLSQEVQDSFSFLEDSSSSEPEWVGAEDGEVAQAEAAGAAFSPGE 545
Query: 222 EEP 224
++P
Sbjct: 546 DDP 548
>gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo
sapiens]
Length = 1101
Score = 34.7 bits (78), Expect = 0.070
Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 18/123 (14%)
Query: 112 LITQSALHRAPHYNSCCRRKYRPE---APGPSVSLSPMPPSEVKLQSGKISREPEPAAGP 168
+I+ +L R C ++RP PGP L P PP E E PA+ P
Sbjct: 434 IISNVSLARLTRGLECPALQHRPSPASGPGPGPGLGPGPPDE--------KLEASPASSP 485
Query: 169 QAEESATVSAPAPMSPTRRRALDHYLTLRSSG-----WI--PDGRGRWVKDENVEFDSDE 221
A+ APA + D + L S W+ DG + F E
Sbjct: 486 LADSGPDDLAPALEDSLSQEVQDSFSFLEDSSSSEPEWVGAEDGEVAQAEAAGAAFSPGE 545
Query: 222 EEP 224
++P
Sbjct: 546 DDP 548
>gi|169218206 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 317
Score = 33.9 bits (76), Expect = 0.12
Identities = 35/103 (33%), Positives = 44/103 (42%), Gaps = 20/103 (19%)
Query: 129 RRKYRPEAPGPSVSL--SPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTR 186
R + P AP P +L SP PP + R P + G A APA + R
Sbjct: 51 RERDDPSAPRPVPALPSSPSPPPPRPFRG----RGPHRSLGCDA-------APAALGNGR 99
Query: 187 RRALDHYLTLRSSGWIPDGRGRWVKDENVEFDSDEEEPPDLPL 229
A R G DG GR D++ D+DEE+PP LPL
Sbjct: 100 PGARSD----RPCGAGGDGGGRLPGDDD---DNDEEQPPPLPL 135
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 33.5 bits (75), Expect = 0.16
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 129 RRKYRPEAPGPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPT 185
++ + PE GP + SP P L + P PAA P++ +SA ++P P P+
Sbjct: 229 KQSHFPETLGPPSASSPESPV---LAASPEPWGPSPAASPESRKSARTTSPEPRKPS 282
>gi|13540569 sphingosine-1-phosphate phosphatase 1 [Homo sapiens]
Length = 441
Score = 33.1 bits (74), Expect = 0.20
Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 25/102 (24%)
Query: 89 PKHQNELRREETKAEAPLLTQTRLITQSALHRAPHYNSCCRRKYRPEAPGPSVSLSPMPP 148
P ++ RRE+ KAEAPL RL R +P APG P PP
Sbjct: 32 PPRRSADRREDEKAEAPLAGDPRL-----------------RGRQPGAPG-----GPQPP 69
Query: 149 SEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTRRRAL 190
+ Q +P+ P + + P SP R AL
Sbjct: 70 GSDRNQ---CPAKPDGGGAPNGVRNGLAAELGPASPRRAGAL 108
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.20
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 121 APHYNSCCRRKYRPEAP---------GPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAE 171
APH +S R RP P G + S +PP + QSG SR A GP+
Sbjct: 72 APHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSG--SRLRPAAPGPRPG 129
Query: 172 ESATVSAPAPMSP 184
S+ ++PAP +P
Sbjct: 130 CSSARASPAPAAP 142
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 33.1 bits (74), Expect = 0.20
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 121 APHYNSCCRRKYRPEAP---------GPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAE 171
APH +S R RP P G + S +PP + QSG SR A GP+
Sbjct: 72 APHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSG--SRLRPAAPGPRPG 129
Query: 172 ESATVSAPAPMSP 184
S+ ++PAP +P
Sbjct: 130 CSSARASPAPAAP 142
>gi|239747816 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 33.1 bits (74), Expect = 0.20
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 83 KERKQNPKHQNELRREETKAEAPLLTQTRLITQSALHRAPHYNSCCRRKYRPEAPGPSVS 142
+ +K + K Q EL ++E K E L +T A ++ Y + K GP+ S
Sbjct: 270 QSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTY---AKGKNMAMMGGPAPS 326
Query: 143 LS---PMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTRRRALD 191
L P S LQ G + AAG +A ++ V+ M P R D
Sbjct: 327 LKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEENRKKD 378
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.20
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 121 APHYNSCCRRKYRPEAP---------GPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAE 171
APH +S R RP P G + S +PP + QSG SR A GP+
Sbjct: 72 APHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSG--SRLRPAAPGPRPG 129
Query: 172 ESATVSAPAPMSP 184
S+ ++PAP +P
Sbjct: 130 CSSARASPAPAAP 142
>gi|239741668 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 3 [Homo sapiens]
Length = 457
Score = 33.1 bits (74), Expect = 0.20
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 83 KERKQNPKHQNELRREETKAEAPLLTQTRLITQSALHRAPHYNSCCRRKYRPEAPGPSVS 142
+ +K + K Q EL ++E K E L +T A ++ Y + K GP+ S
Sbjct: 327 QSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTY---AKGKNMAMMGGPAPS 383
Query: 143 LS---PMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTRRRALD 191
L P S LQ G + AAG +A ++ V+ M P R D
Sbjct: 384 LKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEENRKKD 435
>gi|169163306 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 5 [Homo sapiens]
Length = 471
Score = 33.1 bits (74), Expect = 0.20
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 83 KERKQNPKHQNELRREETKAEAPLLTQTRLITQSALHRAPHYNSCCRRKYRPEAPGPSVS 142
+ +K + K Q EL ++E K E L +T A ++ Y + K GP+ S
Sbjct: 341 QSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTY---AKGKNMAMMGGPAPS 397
Query: 143 LS---PMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTRRRALD 191
L P S LQ G + AAG +A ++ V+ M P R D
Sbjct: 398 LKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEENRKKD 449
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.20
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 121 APHYNSCCRRKYRPEAP---------GPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAE 171
APH +S R RP P G + S +PP + QSG SR A GP+
Sbjct: 72 APHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSG--SRLRPAAPGPRPG 129
Query: 172 ESATVSAPAPMSP 184
S+ ++PAP +P
Sbjct: 130 CSSARASPAPAAP 142
>gi|221316586 BSD domain containing 1 isoform d [Homo sapiens]
Length = 335
Score = 33.1 bits (74), Expect = 0.20
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 141 VSLSPMPPSEVKLQSGKISREPEPAAGPQA--EES--ATVSAPAPMSPT 185
+ +SP+ P E K+ KIS PE GPQ+ EE+ +V PA ++P+
Sbjct: 134 MGISPISPKEAKVPVAKISTFPEGEPGPQSPCEENLVTSVEPPAEVTPS 182
>gi|221316584 BSD domain containing 1 isoform c [Homo sapiens]
Length = 374
Score = 33.1 bits (74), Expect = 0.20
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 141 VSLSPMPPSEVKLQSGKISREPEPAAGPQA--EES--ATVSAPAPMSPT 185
+ +SP+ P E K+ KIS PE GPQ+ EE+ +V PA ++P+
Sbjct: 173 MGISPISPKEAKVPVAKISTFPEGEPGPQSPCEENLVTSVEPPAEVTPS 221
>gi|221316581 BSD domain containing 1 isoform a [Homo sapiens]
Length = 447
Score = 33.1 bits (74), Expect = 0.20
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 141 VSLSPMPPSEVKLQSGKISREPEPAAGPQA--EES--ATVSAPAPMSPT 185
+ +SP+ P E K+ KIS PE GPQ+ EE+ +V PA ++P+
Sbjct: 246 MGISPISPKEAKVPVAKISTFPEGEPGPQSPCEENLVTSVEPPAEVTPS 294
>gi|221316578 BSD domain containing 1 isoform b [Homo sapiens]
Length = 430
Score = 33.1 bits (74), Expect = 0.20
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 141 VSLSPMPPSEVKLQSGKISREPEPAAGPQA--EES--ATVSAPAPMSPT 185
+ +SP+ P E K+ KIS PE GPQ+ EE+ +V PA ++P+
Sbjct: 229 MGISPISPKEAKVPVAKISTFPEGEPGPQSPCEENLVTSVEPPAEVTPS 277
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 33.1 bits (74), Expect = 0.20
Identities = 41/157 (26%), Positives = 57/157 (36%), Gaps = 26/157 (16%)
Query: 62 HRAGKKHLSSLQLFYGKKQPGKERKQNPKHQNELRREETKAEAPLLTQTRLITQSALHRA 121
HR H ++G+K PG E P+ + + R + + E P Q + SA
Sbjct: 551 HRHRHHHYKKRFQWHGRK-PGPETGV-PQSRPPIPRTQPQPEPPSPDQQVTRSNSAAPSG 608
Query: 122 PHYNSCCRRKYRPEAPGP--SVSLSPMPPSEVKLQSGKIS------------REPEPAAG 167
N C R APGP + S+ P S LQ +S EP P +
Sbjct: 609 RLSNPQCPRALPEPAPGPVDASSICPSTSSLFNLQKSSLSARHPQRKRRGGPSEPTPGSR 668
Query: 168 PQAEESATVSAPAPMSPTRRRALDHYLTLRSSGWIPD 204
PQ ATV + P HY + W P+
Sbjct: 669 PQ---DATVHPACQIFP-------HYTPSVAYPWSPE 695
>gi|153792780 additional sex combs like 2 [Homo sapiens]
Length = 1435
Score = 32.7 bits (73), Expect = 0.27
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 88 NPKHQNELRREETKAEAPLLTQTRLITQSALHRAPHYNSCCRRKYRPEAPGPSVSLSPMP 147
+P H +L E+ L TR A P S CR++ P GP++ P
Sbjct: 794 SPAHIEKLDNEK-------LNPTRATATVASVSHPQGPSSCRQEKAPSPTGPALISGASP 846
Query: 148 -----PSEVKLQSGKISREPEPAAGPQAEESATVS-APAPMS 183
V+L++G P P+A + + S V+ P+P++
Sbjct: 847 VHCAADGTVELKAGPSKNIPNPSASSKTDASVPVAVTPSPLT 888
>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 511
Score = 32.3 bits (72), Expect = 0.35
Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 23/120 (19%)
Query: 129 RRKYRPEAPGPSVSL--SPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTR 186
R + P AP P +L SP PP V+ S ++ + S P P R
Sbjct: 51 RERDDPSAPRPVPALPSSPSPPPPVRRPSAAREQQGRQVPAGSLRDCRLASLPL-QRPFR 109
Query: 187 RRALDHYLTL-----------------RSSGWIPDGRGRWVKDENVEFDSDEEEPPDLPL 229
R L R G DG GR D++ D+DEE+PP LPL
Sbjct: 110 GRGPHRSLGCDAAPAALGNGRPGARSDRPCGAGGDGGGRLPGDDD---DNDEEQPPPLPL 166
>gi|239753269 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 32.3 bits (72), Expect = 0.35
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 83 KERKQNPKHQNELRREETKAEAPLLTQTRLITQSALHRAPHYNSCCRRKYRPEAPGPSVS 142
+ +K + K Q EL ++E K E L +T A ++ Y + K GP+ S
Sbjct: 270 QSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTY---AKGKNMAMMGGPAPS 326
Query: 143 LS---PMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTRRRALD 191
L P S LQ G + AAG +A ++ V+ M P R D
Sbjct: 327 LKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEDNRKKD 378
>gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 618
Score = 32.3 bits (72), Expect = 0.35
Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 23/120 (19%)
Query: 129 RRKYRPEAPGPSVSL--SPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTR 186
R + P AP P +L SP PP V+ S ++ + S P P R
Sbjct: 51 RERDDPSAPRPVPALPSSPSPPPPVRRPSAAREQQGRQVPAGSLRDCRLASLPL-QRPFR 109
Query: 187 RRALDHYLTL-----------------RSSGWIPDGRGRWVKDENVEFDSDEEEPPDLPL 229
R L R G DG GR D++ D+DEE+PP LPL
Sbjct: 110 GRGPHRSLGCDAAPAALGNGRPGARSDRPCGAGGDGGGRLPGDDD---DNDEEQPPPLPL 166
>gi|239741686 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 32.3 bits (72), Expect = 0.35
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 83 KERKQNPKHQNELRREETKAEAPLLTQTRLITQSALHRAPHYNSCCRRKYRPEAPGPSVS 142
+ +K + K Q EL ++E K E L +T A ++ Y + K GP+ S
Sbjct: 270 QSQKDHYKSQAELLQKEYKVELDLWLKTLSPEDYAAYKESTY---AKGKNMAMMGGPAPS 326
Query: 143 LS---PMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTRRRALD 191
L P S LQ G + AAG +A ++ V+ M P R D
Sbjct: 327 LKQTDPQSSSAKGLQEGFGEGQGLQAAGTEASQTIWVNCQVSMEPEDNRKKD 378
>gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens]
Length = 4981
Score = 32.3 bits (72), Expect = 0.35
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 124 YNSCCRRKYRPEAPGPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMS 183
+N R R ++P S P S +K G+I E P G EE ++ P P +
Sbjct: 4743 FNYATRLGRRSKSPQAMASHGSRPGSRLKQPIGQIPLESSPPVGLSIEEVERLNTPRPRN 4802
Query: 184 PT 185
P+
Sbjct: 4803 PS 4804
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 32.3 bits (72), Expect = 0.35
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 77 GKKQPGKE-RKQNPKHQNELRREETKAEAPLLTQ--TRLITQSALHRAPHYNSCCRRKYR 133
G++ KE RK++PKH+++ R + K + + R +++ R+ + RR+ R
Sbjct: 1882 GRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSR 1941
Query: 134 PEAPGPSVSLSP----MPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTRRR 188
S S+SP PS + SR P + + S T S + +P+RRR
Sbjct: 1942 SVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRS-RTPSRRR 1999
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,974,317
Number of Sequences: 37866
Number of extensions: 573592
Number of successful extensions: 3312
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 3093
Number of HSP's gapped (non-prelim): 439
length of query: 230
length of database: 18,247,518
effective HSP length: 99
effective length of query: 131
effective length of database: 14,498,784
effective search space: 1899340704
effective search space used: 1899340704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.