Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 109240538
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109240538 polycomb group ring finger 1 [Homo sapiens]
(259 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109240538 polycomb group ring finger 1 [Homo sapiens] 534 e-152
gi|31742478 ring finger protein 3 [Homo sapiens] 177 8e-45
gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens] 170 1e-42
gi|6005964 ring finger protein 110 [Homo sapiens] 165 3e-41
gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens] 155 3e-38
gi|33300663 polycomb group ring finger 5 [Homo sapiens] 145 3e-35
gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens] 97 2e-20
gi|197245452 ring finger protein 24 isoform 2 [Homo sapiens] 52 4e-07
gi|197245450 ring finger protein 24 isoform 1 [Homo sapiens] 52 4e-07
gi|6857791 ring finger protein 24 isoform 1 [Homo sapiens] 52 4e-07
gi|51479192 ring finger protein 1 [Homo sapiens] 52 7e-07
gi|6005747 ring finger protein 2 [Homo sapiens] 50 1e-06
gi|14550405 postreplication repair protein hRAD18p [Homo sapiens] 50 2e-06
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens] 50 3e-06
gi|30425428 deltex homolog 3 [Homo sapiens] 50 3e-06
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 50 3e-06
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 49 3e-06
gi|239048909 checkpoint with forkhead and ring finger domains is... 48 7e-06
gi|239048905 checkpoint with forkhead and ring finger domains is... 48 7e-06
gi|239048862 checkpoint with forkhead and ring finger domains is... 48 7e-06
gi|239048792 checkpoint with forkhead and ring finger domains is... 48 7e-06
gi|239048907 checkpoint with forkhead and ring finger domains is... 48 7e-06
gi|239755486 PREDICTED: tripartite motif-containing protein 64C-... 47 2e-05
gi|239755484 PREDICTED: tripartite motif-containing protein 64C-... 47 2e-05
gi|239750044 PREDICTED: tripartite motif-containing protein 64C-... 47 2e-05
gi|239750042 PREDICTED: tripartite motif-containing protein 64C-... 47 2e-05
gi|239744355 PREDICTED: tripartite motif-containing protein 64C-... 47 2e-05
gi|239744353 PREDICTED: tripartite motif-containing protein 64C-... 47 2e-05
gi|34878777 ring finger protein 20 [Homo sapiens] 45 6e-05
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 45 6e-05
>gi|109240538 polycomb group ring finger 1 [Homo sapiens]
Length = 259
Score = 534 bits (1376), Expect = e-152
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MASPQGGQIAIAMRLRNQLQSVYKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTI 60
MASPQGGQIAIAMRLRNQLQSVYKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTI
Sbjct: 1 MASPQGGQIAIAMRLRNQLQSVYKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTI 60
Query: 61 TECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEE 120
TECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEE
Sbjct: 61 TECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEE 120
Query: 121 KRIREFYQSRGLDRVTQPTGEEPALSNLGLPFSSFDHSKAHYYRYDEQLNLCLERLSSGK 180
KRIREFYQSRGLDRVTQPTGEEPALSNLGLPFSSFDHSKAHYYRYDEQLNLCLERLSSGK
Sbjct: 121 KRIREFYQSRGLDRVTQPTGEEPALSNLGLPFSSFDHSKAHYYRYDEQLNLCLERLSSGK 180
Query: 181 DKNKSVLQNKYVRCSVRAEVRHLRRVLCHRLMLNPQHVQLLFDNEVLPDHMTMKQIWLSR 240
DKNKSVLQNKYVRCSVRAEVRHLRRVLCHRLMLNPQHVQLLFDNEVLPDHMTMKQIWLSR
Sbjct: 181 DKNKSVLQNKYVRCSVRAEVRHLRRVLCHRLMLNPQHVQLLFDNEVLPDHMTMKQIWLSR 240
Query: 241 WFGKPSPLLLQYSVKEKRR 259
WFGKPSPLLLQYSVKEKRR
Sbjct: 241 WFGKPSPLLLQYSVKEKRR 259
>gi|31742478 ring finger protein 3 [Homo sapiens]
Length = 242
Score = 177 bits (449), Expect = 8e-45
Identities = 97/238 (40%), Positives = 142/238 (59%), Gaps = 21/238 (8%)
Query: 35 RVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQP 94
++K+ D+N HI C LC+GY +DATT+TECLHTFC+SC+VKYL+ + CP C I IH++ P
Sbjct: 5 KIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHP 64
Query: 95 LLNLKLDRVMQDIVYKLVPGLQDSEEKRIREFYQSRGLDRVTQPTGEEPAL-----SNLG 149
L + DR MQDIVYKLVPGLQ++E ++ REFY G++ GE + S+
Sbjct: 65 LQYIGHDRTMQDIVYKLVPGLQEAEMRKQREFYHKLGMEVPGDIKGETCSAKQHLDSHRN 124
Query: 150 LPFSSFDHSKAH-----------YYRYDEQLNLCLERLSSGKDKNKSVLQNKYVRCSVRA 198
+ D S Y+R DEQ+++CLE SS L+ K++RCS +A
Sbjct: 125 GETKADDSSNKEAAEEKPEEDNDYHRSDEQVSICLECNSS----KLRGLKRKWIRCSAQA 180
Query: 199 EVRHLRRVLCHRLMLNP-QHVQLLFDNEVLPDHMTMKQIWLSRWFGKPSPLLLQYSVK 255
V HL++ + +L L+ + +L + E+L T+K + ++RW K +PLLL Y K
Sbjct: 181 TVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKKAPLLLHYRPK 238
>gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens]
Length = 326
Score = 170 bits (431), Expect = 1e-42
Identities = 87/224 (38%), Positives = 141/224 (62%), Gaps = 4/224 (1%)
Query: 35 RVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQP 94
R+KI +LN H++C LC GYF+DATTI ECLH+FCK+CIV+YL+TSKYCP+C++++H+T+P
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRP 65
Query: 95 LLNLKLDRVMQDIVYKLVPGLQDSEEKRIREFYQSR-GLDRVTQPTGEEPALSNLGLPFS 153
LLN++ D+ +QDIVYKLVPGL +E KR R+FY + D + +++
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAHPSADAANGSNEDRGEVADEDKRII 125
Query: 154 SFDHSKAHYYRYDEQLNLCLERLSSGKDKNKSVLQNK-YVRCSVRAEVRHLRRVLCHRLM 212
+ D + + +Q N +++ K+K+K + +K Y+RC V HLR+ L ++
Sbjct: 126 TDDEIISLSIEFFDQ-NRLDRKVNKDKEKSKEEVNDKRYLRCPAAMTVMHLRKFLRSKMD 184
Query: 213 L-NPQHVQLLFDNEVLPDHMTMKQIWLSRWFGKPSPLLLQYSVK 255
+ N + ++++ E L D+ T+ I + + PL L+Y V+
Sbjct: 185 IPNTFQIDVMYEEEPLKDYYTLMDIAYIYTWRRNGPLPLKYRVR 228
>gi|6005964 ring finger protein 110 [Homo sapiens]
Length = 344
Score = 165 bits (418), Expect = 3e-41
Identities = 88/234 (37%), Positives = 143/234 (61%), Gaps = 22/234 (9%)
Query: 35 RVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQP 94
R+KI +LN H++C LC GYF+DATTI ECLH+FCK+CIV+YL+T+KYCPMC++++H+T+P
Sbjct: 6 RIKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQVHKTRP 65
Query: 95 LLNLKLDRVMQDIVYKLVPGLQDSEEKRIREFYQSRGLDRVTQPTGEEPALSNLGLPFSS 154
LL+++ D+ +QDIVYKLVPGL E KR R+FY + L V + E+
Sbjct: 66 LLSIRSDKTLQDIVYKLVPGLFKDEMKRRRDFYAAYPLTEVPNGSNEDRG--------EV 117
Query: 155 FDHSKAHYYRYDEQLNLCLERLSSGKDKN--KSVLQN----------KYVRCSVRAEVRH 202
+ K DE ++L +E +D++ K L+N +++RC V H
Sbjct: 118 LEQEKG-ALSDDEIVSLSIEFYEGARDRDEKKGPLENGDGDKEKTGVRFLRCPAAMTVMH 176
Query: 203 LRRVLCHRLMLNPQH-VQLLFDNEVLPDHMTMKQIWLSRWFGKPSPLLLQYSVK 255
L + L +++ + ++ V++L+++E L ++ T+ I + + PL L+Y V+
Sbjct: 177 LAKFLRNKMDVPSKYKVEVLYEDEPLKEYYTLMDIAYIYPWRRNGPLPLKYRVQ 230
>gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens]
Length = 350
Score = 155 bits (392), Expect = 3e-38
Identities = 81/211 (38%), Positives = 130/211 (61%), Gaps = 9/211 (4%)
Query: 30 NEEEVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKI 89
+EEE + + +L +I+C +C GY +DATTITECLHTFCKSCIV++ S CP CNI +
Sbjct: 117 DEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 176
Query: 90 HETQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRIREFYQSRGLDRVTQPTGEEPALSNLG 149
H+TQPL N++LDR +QDIVYKLV L++ E+K++ +FY+ RGL+ V +P +P S+ G
Sbjct: 177 HQTQPLYNIRLDRQLQDIVYKLVINLEEREKKQMHDFYKERGLE-VPKPAVPQPVPSSKG 235
Query: 150 LPFSSFDHSKAHYYRYDEQLNLCLERLSSGKDKNK---SVLQNKYVRCSVRAEVRHLRRV 206
+ +R +L++ L G ++ L+ K+VR S A + H+ +
Sbjct: 236 RSKKVLE----SVFRIPPELDMSLLLEFIGANEGTGHFKPLEKKFVRVSGEATIGHVEKF 291
Query: 207 LCHRLMLNPQ-HVQLLFDNEVLPDHMTMKQI 236
L ++ L+P V ++ + +L + T+++I
Sbjct: 292 LRRKMGLDPACQVDIICGDHLLEQYQTLREI 322
>gi|33300663 polycomb group ring finger 5 [Homo sapiens]
Length = 256
Score = 145 bits (366), Expect = 3e-35
Identities = 75/213 (35%), Positives = 124/213 (58%), Gaps = 15/213 (7%)
Query: 38 IKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLN 97
+KD N +I C +C GY + TT+TECLHTFCK+CIV++ + S CP C ++HET PL
Sbjct: 9 VKDFNPYITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSNDCPRCGNQVHETNPLEM 68
Query: 98 LKLDRVMQDIVYKLVPGLQDSEEKRIREFY-----QSRGLDRVTQPTGEEPALSNLGLPF 152
L+LD +++I++KLVPGL++ E +R EF+ Q G D ++ ++P + G
Sbjct: 69 LRLDNTLEEIIFKLVPGLREQELERESEFWKKNKPQENGQDDTSK--ADKPKVDEEG--- 123
Query: 153 SSFDHSKAHYYRYDEQLNLCLERLSSGKDKNKSV---LQNKYVRCSVRAEVRHLRRVLCH 209
+ Y+R D Q+ +CL+ L + +V L K++RCS R V +++ L
Sbjct: 124 -DENEDDKDYHRSDPQIAICLDCLRNNGQSGDNVVKGLMKKFIRCSTRVTVGTIKKFLSL 182
Query: 210 RLML-NPQHVQLLFDNEVLPDHMTMKQIWLSRW 241
+L L + + +L + E++ TM+ I+++RW
Sbjct: 183 KLKLPSSYELDVLCNGEIMGKDHTMEFIYMTRW 215
>gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens]
Length = 275
Score = 96.7 bits (239), Expect = 2e-20
Identities = 39/69 (56%), Positives = 52/69 (75%)
Query: 30 NEEEVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKI 89
+EEE + + +L +I+C +C GY +DATTITECLHTFCKSCIV++ S CP CNI +
Sbjct: 117 DEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 176
Query: 90 HETQPLLNL 98
H+TQPL N+
Sbjct: 177 HQTQPLYNI 185
Score = 29.6 bits (65), Expect = 2.7
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 187 LQNKYVRCSVRAEVRHLRRVLCHRLMLNPQ-HVQLLFDNEVLPDHMTMKQI 236
L+ K+VR S A + H+ + L ++ L+P V ++ + +L + T+++I
Sbjct: 197 LEKKFVRVSGEATIGHVEKFLRRKMGLDPACQVDIICGDHLLEQYQTLREI 247
>gi|197245452 ring finger protein 24 isoform 2 [Homo sapiens]
Length = 169
Score = 52.4 bits (124), Expect = 4e-07
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 34 VRVKIKDLNEHIVCCLCAGYFV--DATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHE 91
++ K+K+LN H +C +C F D I C H F + C++K+L+ K CP+CN+ + +
Sbjct: 86 LKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 145
Query: 92 TQPLLNLKLDR 102
L+ K DR
Sbjct: 146 LAQ-LHSKQDR 155
>gi|197245450 ring finger protein 24 isoform 1 [Homo sapiens]
Length = 148
Score = 52.4 bits (124), Expect = 4e-07
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 34 VRVKIKDLNEHIVCCLCAGYFV--DATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHE 91
++ K+K+LN H +C +C F D I C H F + C++K+L+ K CP+CN+ + +
Sbjct: 65 LKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 124
Query: 92 TQPLLNLKLDR 102
L+ K DR
Sbjct: 125 LAQ-LHSKQDR 134
>gi|6857791 ring finger protein 24 isoform 1 [Homo sapiens]
Length = 148
Score = 52.4 bits (124), Expect = 4e-07
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 34 VRVKIKDLNEHIVCCLCAGYFV--DATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHE 91
++ K+K+LN H +C +C F D I C H F + C++K+L+ K CP+CN+ + +
Sbjct: 65 LKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 124
Query: 92 TQPLLNLKLDR 102
L+ K DR
Sbjct: 125 LAQ-LHSKQDR 134
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 51.6 bits (122), Expect = 7e-07
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 33 EVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQT-SKYCPMCNIKIHE 91
E+ V + L+ ++C +C + T ECLH FC CIV L++ +K CP C K+
Sbjct: 34 EIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVS 93
Query: 92 TQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRIREFYQSRGLDRVTQPTGEEPALSNL 148
+ +L+ D ++ K+ P ++ E +Q R L R+++ ++ S++
Sbjct: 94 KR---SLRPDPNFDALISKIYPSREEYEA------HQDRVLIRLSRLHNQQALSSSI 141
>gi|6005747 ring finger protein 2 [Homo sapiens]
Length = 336
Score = 50.4 bits (119), Expect = 1e-06
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 33 EVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQT-SKYCPMCNIKIHE 91
E+ V + L+ ++C +C + T ECLH FC CI+ L++ +K CP C K+
Sbjct: 37 EIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 96
Query: 92 TQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRIREFYQSRGLDRVTQPTGEEPALSN 147
+ +L+ D ++ K+ P + E +Q R L R+ + ++ ALS+
Sbjct: 97 KR---SLRPDPNFDALISKIYPSRDEYEA------HQERVLARINKHNNQQ-ALSH 142
>gi|14550405 postreplication repair protein hRAD18p [Homo sapiens]
Length = 495
Score = 50.1 bits (118), Expect = 2e-06
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 38 IKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLN 97
+K +++ + C +C YF A I +C H +C CI K+L CP C + + T+P +
Sbjct: 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV--TEP--D 71
Query: 98 LKLDRVMQDIVYKL 111
LK +R++ ++V L
Sbjct: 72 LKNNRILDELVKSL 85
>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
Length = 485
Score = 49.7 bits (117), Expect = 3e-06
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 31 EEEVRVKIKDLNEH-IVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKI 89
+EEV + D+ E+ + C +C+ YF++A T+ C H+FC CI ++++ CP+C I
Sbjct: 386 KEEVLSHMNDVLENELQCIICSEYFIEAVTLN-CAHSFCSYCINEWMKRKIECPICRKDI 444
Query: 90 HETQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRIRE 125
+L LD + +V L +++ IRE
Sbjct: 445 --KSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRE 478
>gi|30425428 deltex homolog 3 [Homo sapiens]
Length = 347
Score = 49.7 bits (117), Expect = 3e-06
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 35 RVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMC 85
R++ + + C +C G +A T+ +C H+FC+ CI + LQ K CPMC
Sbjct: 152 RLREEAEEQESTCPICLGEIQNAKTLEKCRHSFCEGCITRALQVKKACPMC 202
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 47 CCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQD 106
C LC F + T T C H+FCK+C+ + L + YCP+C + E + +++++
Sbjct: 479 CSLCMRLFFEPVT-TPCGHSFCKNCLERCLDHAPYCPLCKESLKEYLADRRYCVTQLLEE 537
Query: 107 IVYKLVPGLQDSEEKRI 123
++ K +P + SE K+I
Sbjct: 538 LIVKYLPD-ELSERKKI 553
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 49.3 bits (116), Expect = 3e-06
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 47 CCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQD 106
C LC + T T C HTFC C+ + L + +CP+C K+ E N + + ++
Sbjct: 449 CALCMRLLFEPVT-TPCGHTFCLKCLERCLDHAPHCPLCKDKLSELLASRNFNITVLAEE 507
Query: 107 IVYKLVPGLQDSEEKRI 123
++++ +P + S+ KRI
Sbjct: 508 LIFRYLPD-ELSDRKRI 523
>gi|239048909 checkpoint with forkhead and ring finger domains
isoform 5 [Homo sapiens]
Length = 572
Score = 48.1 bits (113), Expect = 7e-06
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 7 GQIAIAMRLRNQLQSVYKMDPLRNEEEVRV---KIKDLNEHIVCCLCAGYFVDATTITEC 63
GQ+ +A RN Q+V+ E+VR K + E + C +C D ++ C
Sbjct: 178 GQLLVAQPRRNA-QTVH--------EDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPC 228
Query: 64 LHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRI 123
+HTFC +C +++ S CP C P+ + + ++ ++V + +Q ++ R
Sbjct: 229 MHTFCAACYSGWMERSSLCPTCRC------PVERICKNHILNNLVEAYL--IQHPDKSRS 280
Query: 124 REFYQSR-GLDRVTQ 137
E QS +++TQ
Sbjct: 281 EEDVQSMDARNKITQ 295
>gi|239048905 checkpoint with forkhead and ring finger domains
isoform 3 [Homo sapiens]
Length = 652
Score = 48.1 bits (113), Expect = 7e-06
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 7 GQIAIAMRLRNQLQSVYKMDPLRNEEEVRV---KIKDLNEHIVCCLCAGYFVDATTITEC 63
GQ+ +A RN Q+V+ E+VR K + E + C +C D ++ C
Sbjct: 258 GQLLVAQPRRNA-QTVH--------EDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPC 308
Query: 64 LHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRI 123
+HTFC +C +++ S CP C P+ + + ++ ++V + +Q ++ R
Sbjct: 309 MHTFCAACYSGWMERSSLCPTCRC------PVERICKNHILNNLVEAYL--IQHPDKSRS 360
Query: 124 REFYQSR-GLDRVTQ 137
E QS +++TQ
Sbjct: 361 EEDVQSMDARNKITQ 375
>gi|239048862 checkpoint with forkhead and ring finger domains
isoform 2 [Homo sapiens]
Length = 663
Score = 48.1 bits (113), Expect = 7e-06
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 7 GQIAIAMRLRNQLQSVYKMDPLRNEEEVRV---KIKDLNEHIVCCLCAGYFVDATTITEC 63
GQ+ +A RN Q+V+ E+VR K + E + C +C D ++ C
Sbjct: 270 GQLLVAQPRRNA-QTVH--------EDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPC 320
Query: 64 LHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRI 123
+HTFC +C +++ S CP C P+ + + ++ ++V + +Q ++ R
Sbjct: 321 MHTFCAACYSGWMERSSLCPTCRC------PVERICKNHILNNLVEAYL--IQHPDKSRS 372
Query: 124 REFYQSR-GLDRVTQ 137
E QS +++TQ
Sbjct: 373 EEDVQSMDARNKITQ 387
>gi|239048792 checkpoint with forkhead and ring finger domains
isoform 1 [Homo sapiens]
Length = 664
Score = 48.1 bits (113), Expect = 7e-06
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 7 GQIAIAMRLRNQLQSVYKMDPLRNEEEVRV---KIKDLNEHIVCCLCAGYFVDATTITEC 63
GQ+ +A RN Q+V+ E+VR K + E + C +C D ++ C
Sbjct: 270 GQLLVAQPRRNA-QTVH--------EDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPC 320
Query: 64 LHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRI 123
+HTFC +C +++ S CP C P+ + + ++ ++V + +Q ++ R
Sbjct: 321 MHTFCAACYSGWMERSSLCPTCRC------PVERICKNHILNNLVEAYL--IQHPDKSRS 372
Query: 124 REFYQSR-GLDRVTQ 137
E QS +++TQ
Sbjct: 373 EEDVQSMDARNKITQ 387
>gi|239048907 checkpoint with forkhead and ring finger domains
isoform 4 [Homo sapiens]
Length = 623
Score = 48.1 bits (113), Expect = 7e-06
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 7 GQIAIAMRLRNQLQSVYKMDPLRNEEEVRV---KIKDLNEHIVCCLCAGYFVDATTITEC 63
GQ+ +A RN Q+V+ E+VR K + E + C +C D ++ C
Sbjct: 229 GQLLVAQPRRNA-QTVH--------EDVRAAAGKPDKMEETLTCIICQDLLHDCVSLQPC 279
Query: 64 LHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRI 123
+HTFC +C +++ S CP C P+ + + ++ ++V + +Q ++ R
Sbjct: 280 MHTFCAACYSGWMERSSLCPTCRC------PVERICKNHILNNLVEAYL--IQHPDKSRS 331
Query: 124 REFYQSR-GLDRVTQ 137
E QS +++TQ
Sbjct: 332 EEDVQSMDARNKITQ 346
>gi|239755486 PREDICTED: tripartite motif-containing protein
64C-like isoform 2 [Homo sapiens]
Length = 447
Score = 47.0 bits (110), Expect = 2e-05
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 38 IKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSK---YCPMCNIKIHE 91
++ ++CC+C YF+D T T+C+H+FC+ C+ + + CP+C KI E
Sbjct: 6 LRVFQNELICCICVNYFIDPVT-TDCVHSFCRPCLCLCSEEGRAPMRCPLCR-KISE 60
>gi|239755484 PREDICTED: tripartite motif-containing protein
64C-like isoform 1 [Homo sapiens]
Length = 450
Score = 47.0 bits (110), Expect = 2e-05
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 38 IKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSK---YCPMCNIKIHE 91
++ ++CC+C YF+D T T+C+H+FC+ C+ + + CP+C KI E
Sbjct: 6 LRVFQNELICCICVNYFIDPVT-TDCVHSFCRPCLCLCSEEGRAPMRCPLCR-KISE 60
>gi|239750044 PREDICTED: tripartite motif-containing protein
64C-like isoform 2 [Homo sapiens]
Length = 447
Score = 47.0 bits (110), Expect = 2e-05
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 38 IKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSK---YCPMCNIKIHE 91
++ ++CC+C YF+D T T+C+H+FC+ C+ + + CP+C KI E
Sbjct: 6 LRVFQNELICCICVNYFIDPVT-TDCVHSFCRPCLCLCSEEGRAPMRCPLCR-KISE 60
>gi|239750042 PREDICTED: tripartite motif-containing protein
64C-like isoform 1 [Homo sapiens]
Length = 450
Score = 47.0 bits (110), Expect = 2e-05
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 38 IKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSK---YCPMCNIKIHE 91
++ ++CC+C YF+D T T+C+H+FC+ C+ + + CP+C KI E
Sbjct: 6 LRVFQNELICCICVNYFIDPVT-TDCVHSFCRPCLCLCSEEGRAPMRCPLCR-KISE 60
>gi|239744355 PREDICTED: tripartite motif-containing protein
64C-like isoform 1 [Homo sapiens]
Length = 447
Score = 47.0 bits (110), Expect = 2e-05
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 38 IKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSK---YCPMCNIKIHE 91
++ ++CC+C YF+D T T+C+H+FC+ C+ + + CP+C KI E
Sbjct: 6 LRVFQNELICCICVNYFIDPVT-TDCVHSFCRPCLCLCSEEGRAPMRCPLCR-KISE 60
>gi|239744353 PREDICTED: tripartite motif-containing protein
64C-like isoform 2 [Homo sapiens]
Length = 450
Score = 47.0 bits (110), Expect = 2e-05
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 38 IKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSK---YCPMCNIKIHE 91
++ ++CC+C YF+D T T+C+H+FC+ C+ + + CP+C KI E
Sbjct: 6 LRVFQNELICCICVNYFIDPVT-TDCVHSFCRPCLCLCSEEGRAPMRCPLCR-KISE 60
>gi|34878777 ring finger protein 20 [Homo sapiens]
Length = 975
Score = 45.1 bits (105), Expect = 6e-05
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 14 RLRNQLQSVYKMDPLRNEEEVRVK-IKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCI 72
RLR +L++ K D + +E+ ++ IKD + C C DA +T+C H FC C+
Sbjct: 888 RLRRKLETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAV-LTKCFHVFCFECV 946
Query: 73 -VKYLQTSKYCPMCN 86
+Y + CP CN
Sbjct: 947 KTRYDTRQRKCPKCN 961
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 45.1 bits (105), Expect = 6e-05
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 47 CCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQD 106
C LC F + T T C HTFC C+ + L + CP+C + + + +M++
Sbjct: 467 CALCMRLFYEPVT-TPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEE 525
Query: 107 IVYKLVPGLQDSEEKRIREFYQ 128
++ K +P E K R+ Y+
Sbjct: 526 LIAKFLP----EELKERRKLYE 543
Score = 39.7 bits (91), Expect = 0.003
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 47 CCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHE--------------- 91
C C G+ D +++ C HTFCK C+ + + C +C +K+
Sbjct: 158 CRKCHGFLSDPVSLS-CGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRARGARRAG 216
Query: 92 TQPLLNLKLDRVMQDIVYKLVPG 114
QP L+++ V+ ++ KL PG
Sbjct: 217 QQPPPPLRVNVVLSGLLGKLFPG 239
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,276,336
Number of Sequences: 37866
Number of extensions: 449433
Number of successful extensions: 1517
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 1312
Number of HSP's gapped (non-prelim): 310
length of query: 259
length of database: 18,247,518
effective HSP length: 100
effective length of query: 159
effective length of database: 14,460,918
effective search space: 2299285962
effective search space used: 2299285962
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.