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Search of human proteins with 109134344
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109134344 SH3-domain binding protein 5 (BTK-associated)
isoform b [Homo sapiens]
(298 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109134344 SH3-domain binding protein 5 (BTK-associated) isofo... 584 e-167
gi|109134336 SH3-domain binding protein 5 (BTK-associated) isofo... 584 e-167
gi|24308303 SH3-binding domain protein 5-like [Homo sapiens] 104 1e-22
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 44 2e-04
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 39 0.006
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 38 0.012
gi|63252910 IQ motif and WD repeats 1 isoform b [Homo sapiens] 37 0.016
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 37 0.016
gi|149944526 additional sex combs like 3 [Homo sapiens] 37 0.016
gi|63252908 IQ motif and WD repeats 1 isoform a [Homo sapiens] 37 0.021
gi|21071077 dishevelled-associated activator of morphogenesis 1 ... 35 0.061
gi|56550043 sarcolemma associated protein [Homo sapiens] 35 0.080
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 35 0.10
gi|40807477 retinoic acid induced 1 [Homo sapiens] 35 0.10
gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens] 34 0.14
gi|50083279 centrosome protein 4 [Homo sapiens] 34 0.14
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 34 0.14
gi|62526045 zinc finger protein 638 [Homo sapiens] 34 0.14
gi|21626468 zinc finger protein 638 [Homo sapiens] 34 0.14
gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens] 34 0.18
gi|55741677 SET domain containing 1A [Homo sapiens] 34 0.18
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 34 0.18
gi|8923040 CDKN2A interacting protein [Homo sapiens] 34 0.18
gi|31377634 guanylate binding protein 4 [Homo sapiens] 34 0.18
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 34 0.18
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 33 0.23
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 33 0.23
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 33 0.23
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 33 0.23
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 33 0.23
>gi|109134344 SH3-domain binding protein 5 (BTK-associated) isoform
b [Homo sapiens]
Length = 298
Score = 584 bits (1505), Expect = e-167
Identities = 298/298 (100%), Positives = 298/298 (100%)
Query: 1 MLNHATQRVMEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAK 60
MLNHATQRVMEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAK
Sbjct: 1 MLNHATQRVMEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAK 60
Query: 61 YYVQLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERRRSSAMGPRGCGVGAEG 120
YYVQLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERRRSSAMGPRGCGVGAEG
Sbjct: 61 YYVQLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERRRSSAMGPRGCGVGAEG 120
Query: 121 SSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQ 180
SSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQ
Sbjct: 121 SSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQ 180
Query: 181 FPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDK 240
FPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDK
Sbjct: 181 FPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDK 240
Query: 241 ANNNRGLSSSSGSGGSSKSQSSTSPEGQALENRMKQLSLQCSKGRDGIIADIKMVQIG 298
ANNNRGLSSSSGSGGSSKSQSSTSPEGQALENRMKQLSLQCSKGRDGIIADIKMVQIG
Sbjct: 241 ANNNRGLSSSSGSGGSSKSQSSTSPEGQALENRMKQLSLQCSKGRDGIIADIKMVQIG 298
>gi|109134336 SH3-domain binding protein 5 (BTK-associated) isoform
a [Homo sapiens]
Length = 455
Score = 584 bits (1505), Expect = e-167
Identities = 298/298 (100%), Positives = 298/298 (100%)
Query: 1 MLNHATQRVMEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAK 60
MLNHATQRVMEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAK
Sbjct: 158 MLNHATQRVMEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAK 217
Query: 61 YYVQLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERRRSSAMGPRGCGVGAEG 120
YYVQLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERRRSSAMGPRGCGVGAEG
Sbjct: 218 YYVQLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERRRSSAMGPRGCGVGAEG 277
Query: 121 SSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQ 180
SSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQ
Sbjct: 278 SSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQ 337
Query: 181 FPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDK 240
FPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDK
Sbjct: 338 FPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDK 397
Query: 241 ANNNRGLSSSSGSGGSSKSQSSTSPEGQALENRMKQLSLQCSKGRDGIIADIKMVQIG 298
ANNNRGLSSSSGSGGSSKSQSSTSPEGQALENRMKQLSLQCSKGRDGIIADIKMVQIG
Sbjct: 398 ANNNRGLSSSSGSGGSSKSQSSTSPEGQALENRMKQLSLQCSKGRDGIIADIKMVQIG 455
Score = 33.5 bits (75), Expect = 0.23
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 10 MEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSKPYFEL-KAKYYVQLEQL 68
+E + K RS LV A ++ +L KK+ +A+ SKPY+E + QLE
Sbjct: 66 LEDARQKFRSVLVE---------ATVKLDELVKKIGKAVEDSKPYWEARRVARQAQLEAQ 116
Query: 69 KKTVDDLQAKLTLAKGEYKMALKNLEMISDE 99
K T D +A L + ++L ++ D+
Sbjct: 117 KATQDFQRATEVLRAAKETISLAEQRLLEDD 147
>gi|24308303 SH3-binding domain protein 5-like [Homo sapiens]
Length = 393
Score = 104 bits (259), Expect = 1e-22
Identities = 65/166 (39%), Positives = 90/166 (54%), Gaps = 24/166 (14%)
Query: 1 MLNHATQRVMEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAK 60
MLNHAT +V EAE+ + R E H+ A R++ L+K L+RAI KS+PYFELKA+
Sbjct: 172 MLNHATCKVNEAEEERLRGEREHQRVTRLCQQAEARVQALQKTLRRAIGKSRPYFELKAQ 231
Query: 61 YYVQLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERRRSS----AMGP-RGCG 115
+ LE+ K V +L+ ++ AK Y +AL+NLE IS++IH RRR +GP R
Sbjct: 232 FSQILEEHKAKVTELEQQVAQAKTRYSVALRNLEQISEQIHARRRGGLPPHPLGPRRSSP 291
Query: 116 VGAEGSSTSVED-------------------LPGSKPEPDAISVAS 142
VGAE +ED PG P+ D +S+ S
Sbjct: 292 VGAEAGPEDMEDGDSGIEGAEGAGLEEGSSLGPGPAPDTDTLSLLS 337
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 43.9 bits (102), Expect = 2e-04
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 134 EPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVVRPGSLDLP 193
+P A++ A E S S+ S S + S SS SS +S S D SL +
Sbjct: 2517 QPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDS-----EGSSLPVQ 2571
Query: 194 SPVSLSEFGMMFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGS 253
V+L + P P+ PE + R + + +S ++++ SSSS S
Sbjct: 2572 PEVALKR--VPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSS 2629
Query: 254 GGSSKSQSSTS 264
SS S SS+S
Sbjct: 2630 SSSSSSSSSSS 2640
Score = 39.3 bits (90), Expect = 0.004
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 120 GSSTSVEDLPGSKPEPDAISVASEAFEDDS-CSNFVSEDDSETQSVSSFSSGPTSPSEMP 178
G + S LP ++ +P S AF D S C + + +QS+SS + T+ S
Sbjct: 2432 GQAPSQSLLPPAQDQPR--SPVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSS--- 2486
Query: 179 DQFPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECSGASSPECEVERGDRAEGAENKTS 238
A G L +P+P G+ +G +GA P E + +S
Sbjct: 2487 ----AGDHNGMLSVPAP------GVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSS 2536
Query: 239 DKANNNRGLSSSSGSGGSSKSQSSTSPEGQAL 270
++++ SSSS S SS SS+ EG +L
Sbjct: 2537 SSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2568
Score = 34.7 bits (78), Expect = 0.10
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 17/144 (11%)
Query: 130 GSKPEPDAIS----VASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVV 185
G PEP +S + S S+ S S + S SS SS +S S P+
Sbjct: 2593 GRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPA 2652
Query: 186 RPGSLDLPSPVSLSE--------FGMMFPVLGPRSECSGASSPECEVERGDRAEGAENKT 237
+PG LP P S + P+ R S + SP VER R +
Sbjct: 2653 KPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSP---VER--RRPSPQPSP 2707
Query: 238 SDKANNNRGLSSSSGSGGSSKSQS 261
D+ +++ S G G S+S S
Sbjct: 2708 RDQQSSSSERGSRRGQRGDSRSPS 2731
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 38.9 bits (89), Expect = 0.006
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 20/168 (11%)
Query: 97 SDEIHERRRSSAMGPRGCGVGAEGSSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSE 156
SD S + ++ S +S SK E D+ S++ DS S+ S+
Sbjct: 593 SDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSD 652
Query: 157 D-DSETQSVSSFSSGPTSPSEMPDQFPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECS 215
+ DS S SS SS + S+ D + S D S+ S
Sbjct: 653 NSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSD-------------------SSDSS 693
Query: 216 GASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSST 263
+S+ + D ++ + +SD +N+N S SS S SS S +S+
Sbjct: 694 DSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSS 741
Score = 37.0 bits (84), Expect = 0.021
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 8/146 (5%)
Query: 121 SSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQ 180
SS S + S + + +S++ DS S+ S+ DS S SS SS + S+ D
Sbjct: 557 SSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDS 616
Query: 181 FPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDK 240
S D S S SE +S+ S ++S + + +SD
Sbjct: 617 ------SDSSDSKSDSSKSESDSSDS--DSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDS 668
Query: 241 ANNNRGLSSSSGSGGSSKSQSSTSPE 266
++++ SSS S S+ S SS S +
Sbjct: 669 SDSSDSSDSSSSSDSSNSSDSSDSSD 694
Score = 33.5 bits (75), Expect = 0.23
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 4/146 (2%)
Query: 122 STSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQF 181
S+ D S D+ S +S++ + SN DS S SS SS + S+ D
Sbjct: 1150 SSDSSDSSDSSDSSDS-SDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 1208
Query: 182 PAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDKA 241
+ S D S S S S+ S +S + D ++ +++ TSD +
Sbjct: 1209 DSSDSSDSSD-SSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSDSSDS-TSD-S 1265
Query: 242 NNNRGLSSSSGSGGSSKSQSSTSPEG 267
N+ S SG+G ++ S S + EG
Sbjct: 1266 NDESDSQSKSGNGNNNGSDSDSDSEG 1291
Score = 28.9 bits (63), Expect = 5.7
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 208 LGPRSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEG 267
+G S+ PE + + + +G +KTS N+ G+ +GS +Q E
Sbjct: 295 IGQNSDSKEYYDPEGKEDPHNEVDG--DKTSKSEENSAGIPEDNGSQRIEDTQKLNHRES 352
Query: 268 QALENRMKQLS 278
+ +ENR+ + S
Sbjct: 353 KRVENRITKES 363
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 37.7 bits (86), Expect = 0.012
Identities = 39/155 (25%), Positives = 56/155 (36%), Gaps = 17/155 (10%)
Query: 120 GSSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPD 179
G + ED G+ PD + E+ S+ S S + S SS S T E D
Sbjct: 2530 GPGLTFED-SGNPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGD 2588
Query: 180 QFP--------AVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECSGASSPECEVERGDRAE 231
+ S SP S S S S +SS +
Sbjct: 2589 KNGDGGCGTGGRNCSAASSRAASPASSSS--------SSSSSSSSSSSSSSSSSSSSSSS 2640
Query: 232 GAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPE 266
+ + +S ++++ SSSS S SS S SST+ E
Sbjct: 2641 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDE 2675
Score = 35.0 bits (79), Expect = 0.080
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Query: 110 GPRGCGVGAEGSS--TSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSF 167
G GCG G S +S P S + S +S + S S+ S S + S SS
Sbjct: 2591 GDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2650
Query: 168 SSGPTSPSEMPDQFPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECS 215
SS +S S + + D S S + P GP ++ +
Sbjct: 2651 SSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAA 2698
Score = 34.3 bits (77), Expect = 0.14
Identities = 43/173 (24%), Positives = 63/173 (36%), Gaps = 20/173 (11%)
Query: 128 LPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVVR- 186
+P ++P+P + A E+ + V G TSP + ++R
Sbjct: 2430 MPATRPKPKK----ARAAEESGAKGPRRPGEEAELLVKLDHEGVTSPKSKKAKEALLLRE 2485
Query: 187 -PGSLDLPSPVSLSEFGMMFPVLG---PRSECSGASSPECEVERGDRA---EGAENKTSD 239
PG+ P SL G P G P++ A+ + E G + K+ D
Sbjct: 2486 DPGAGGWQEPKSLLSLGSYPPAAGSSEPKAPWPKATDGDLAQEPGPGLTFEDSGNPKSPD 2545
Query: 240 KAN--------NNRGLSSSSGSGGSSKSQSSTSPEGQALENRMKQLSLQCSKG 284
KA + SSSSGS SS S SS+ E + E K C G
Sbjct: 2546 KAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTG 2598
>gi|63252910 IQ motif and WD repeats 1 isoform b [Homo sapiens]
Length = 860
Score = 37.4 bits (85), Expect = 0.016
Identities = 57/235 (24%), Positives = 90/235 (38%), Gaps = 37/235 (15%)
Query: 84 GEYKMALKNLEMISDEIH---ERRRSSAMGPRGCGVGAEGSSTSVED---LPGSKPEPDA 137
GE + ++ +SD + E A RG G TS D LP PD
Sbjct: 333 GEQSPNVSLMQRMSDMLSRWFEEASEVAQSNRGRGRSRPRGGTSQSDISTLPTVPSSPD- 391
Query: 138 ISVASEAFEDDS-CSNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVVRPGSLDLPSPV 196
+ V+ A E D+ F+ S T S + S+ +SP+E P P + P S S
Sbjct: 392 LEVSETAMEVDTPAEQFLQPSTSSTMSAQAHST--SSPTESPHSTPLLSSPDSEQRQSVE 449
Query: 197 SLSEF----------------GMMFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDK 240
+ G PVL G ++ ++ D + S
Sbjct: 450 ASGHHTHHQSDNNNEKLSPKPGTGEPVLSLHYSTEGTTTSTIKLNFTD-------EWSSI 502
Query: 241 ANNNRGLSSSSGSGGSSKS---QSSTS-PEGQALENRMKQLSLQCSKGRDGIIAD 291
A+++RG+ S S G +S QSS PEG + ++ S +K ++G+ A+
Sbjct: 503 ASSSRGIGSHCKSEGQEESFVPQSSVQPPEGDSETKAPEESSEDVTKYQEGVSAE 557
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 37.4 bits (85), Expect = 0.016
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 141 ASEAFEDDSCSNFVSE-DDSETQSVSSFSSGPTSPSEMPDQFPAVVRPGSLDLPSPVSLS 199
A +A +++S F SE ++ E S SS S S SE +Q + S + S S S
Sbjct: 663 AGKAKQENSAKKFYSESEEEEDSSDSSSDSESESGSESGEQGESGEEGDSNEDSSEDSSS 722
Query: 200 E----FGMMFPVLGPRS-ECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSG 254
E G + R+ + + + + + E G++ E ++KTSD +N+ SSS
Sbjct: 723 EQDSESGRESGLENKRTAKRNSKAKGKSDSEDGEK-ENEKSKTSDSSNDE----SSSIED 777
Query: 255 GSSKSQSSTSPEGQALENRM-KQLSLQCSKGRDGIIADIKMVQI 297
SS S+S + PE ++ R+ K+ + + R + D+ ++ +
Sbjct: 778 SSSDSESESEPESESESRRVTKEKEKKTKQDRTPLTKDVSLLDL 821
>gi|149944526 additional sex combs like 3 [Homo sapiens]
Length = 2248
Score = 37.4 bits (85), Expect = 0.016
Identities = 46/200 (23%), Positives = 78/200 (39%), Gaps = 25/200 (12%)
Query: 101 HERRRSSAMGPRGCGVGAEGSSTSVEDLP----------GSKPEP---DAISVASEAFED 147
H++R+S ++ + SS + + L + PEP + S+A EAF
Sbjct: 766 HQQRKSPSVSEEPLSPQKDESSATAKPLGENLTSQQKNLSNTPEPIIMSSSSIAPEAFPS 825
Query: 148 DSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVVRPGSL-------DLPSPVSLSE 200
+ N + V + P S E+ V+ S+ LPSP+ LS
Sbjct: 826 EDLHNKTLSQQTCKSHVDTEKPYPASIPELASTEMIKVKNHSVLQRTEKKVLPSPLELSV 885
Query: 201 FGMMFPVLGPRSECSGASSPE--CEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSK 258
F G + + V++ +EG+ NKT + + L +S S
Sbjct: 886 FSEGTDNKGNELPSAKLQDKQYISSVDKAPFSEGSRNKTHKQGSTQSRLETSH---TSKS 942
Query: 259 SQSSTSPEGQALENRMKQLS 278
S+ S SP+G E+R ++S
Sbjct: 943 SEPSKSPDGIRNESRDSEIS 962
>gi|63252908 IQ motif and WD repeats 1 isoform a [Homo sapiens]
Length = 880
Score = 37.0 bits (84), Expect = 0.021
Identities = 61/255 (23%), Positives = 94/255 (36%), Gaps = 57/255 (22%)
Query: 84 GEYKMALKNLEMISDEIH---ERRRSSAMGPRGCGVGAEGSSTSVED---LPGSKPEPDA 137
GE + ++ +SD + E A RG G TS D LP PD
Sbjct: 333 GEQSPNVSLMQRMSDMLSRWFEEASEVAQSNRGRGRSRPRGGTSQSDISTLPTVPSSPD- 391
Query: 138 ISVASEAFEDDS-CSNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVVRPGS------- 189
+ V+ A E D+ F+ S T S + S+ +SP+E P P + P S
Sbjct: 392 LEVSETAMEVDTPAEQFLQPSTSSTMSAQAHST--SSPTESPHSTPLLSSPDSEQRQSVE 449
Query: 190 ---------LDLPSPVSLSEFGMMF--------------------PVLGPRSECSGASSP 220
D PS V + G M PVL G ++
Sbjct: 450 ASGHHTHHQSDSPSSVVNKQLGSMSLDEQQDNNNEKLSPKPGTGEPVLSLHYSTEGTTTS 509
Query: 221 ECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKS---QSSTS-PEGQALENRMKQ 276
++ D + S A+++RG+ S S G +S QSS PEG + ++
Sbjct: 510 TIKLNFTD-------EWSSIASSSRGIGSHCKSEGQEESFVPQSSVQPPEGDSETKAPEE 562
Query: 277 LSLQCSKGRDGIIAD 291
S +K ++G+ A+
Sbjct: 563 SSEDVTKYQEGVSAE 577
>gi|21071077 dishevelled-associated activator of morphogenesis 1
[Homo sapiens]
Length = 1078
Score = 35.4 bits (80), Expect = 0.061
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 21 LVHKETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAKYYVQLEQLKKTVDDLQAKLT 80
LV++ ++ +MR+ +L++ + K + + K + + E++ +T++ ++ KL
Sbjct: 439 LVNENEVKQWKEQAEKMRKEHNELQQKLEKKERECDAKTQ---EKEEMMQTLNKMKEKLE 495
Query: 81 LAKGEYKMALKNLEMISDEIHE--RRRSSAMGPRGCGVGAEG----SSTSVEDLPGSKPE 134
E+K + + ++ ++HE RR A P G GA G SS LP P
Sbjct: 496 KETTEHKQVKQQVADLTAQLHELSRRAVCASIPGGPSPGAPGGPFPSSVPGSLLPPPPPP 555
Query: 135 P 135
P
Sbjct: 556 P 556
>gi|56550043 sarcolemma associated protein [Homo sapiens]
Length = 811
Score = 35.0 bits (79), Expect = 0.080
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 16 KTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAKYYVQLEQLKKTVDDL 75
+T+ EL +E A +YN A+ ++ L KLK A K + E++ K + ++L+ +D++
Sbjct: 295 RTQEEL--RELANKYNGAVNEIKDLSDKLKVAEGKQE---EIQQKGQAEKKELQHKIDEM 349
Query: 76 QAKLTLAKGEYKMALKNLEMISDEIHER 103
+ K + E + ++ L+ +D +ER
Sbjct: 350 EEK----EQELQAKIEALQADNDFTNER 373
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 34.7 bits (78), Expect = 0.10
Identities = 46/164 (28%), Positives = 65/164 (39%), Gaps = 32/164 (19%)
Query: 118 AEGSSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSED---DSETQS----------V 164
A G+STS D + P +S ++ S S + S DS T
Sbjct: 237 ASGASTS-SDSGWASPSASWVSTSTSRASTSSDSGWASSSASWDSITSDSGWVCPSASWA 295
Query: 165 SSFSSGPTSPSEMPDQFPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECSGASSPECEV 224
SS +S ++PS+ P+V R +L + S S SGAS+P
Sbjct: 296 SSSASWASAPSDSGSSSPSVSRASTLSVSGWASFS--------------ASGASAPSDSG 341
Query: 225 ERGDRAEGAENKTSDK---ANNNRGLSSSSGSGGSSKSQSSTSP 265
A G + TSD + + G S+SS SG +S S S SP
Sbjct: 342 WTSHSASGV-STTSDSGWASPSASGASTSSDSGWASPSASWASP 384
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 34.7 bits (78), Expect = 0.10
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 30/152 (19%)
Query: 64 QLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERRRSSAMGPRGCGVGAEGSST 123
Q+E + TV L L+ A K +KNL + E H+ + S P G G AE + T
Sbjct: 441 QVENISNTVQQLL--LSKAAVPQKKGVKNLVSRTPEQHKSQHCS---PEGSGYSAEPAGT 495
Query: 124 SVEDLPGSKP--------EPDAISVASEAFEDD---------SCSNFVSEDDSETQSVSS 166
+ + P S P E D +S + + E S + S ++ +SVS+
Sbjct: 496 PLSEPPSSTPQSTHAEPQEADYLSGSEDPLERSFLYCNQARGSPARVNSNSKAKPESVST 555
Query: 167 FSSGPTSPSEM----PDQFPAVVRPGSLDLPS 194
S TSP +M D F ++ GSL L S
Sbjct: 556 CS--VTSPDDMSTKSDDSFQSL--HGSLPLDS 583
>gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens]
Length = 1019
Score = 34.3 bits (77), Expect = 0.14
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 248 SSSSGSGGSSKSQSSTSPEGQALENRMKQLSLQCSKGRDGIIA--DIKMV 295
SS G GGS S SS+ E RM++L C DG I+ D+ MV
Sbjct: 14 SSGGGGGGSGSSSSSSDTSSTGEEERMRRLFQTCDGDGDGYISRNDLLMV 63
>gi|50083279 centrosome protein 4 [Homo sapiens]
Length = 1140
Score = 34.3 bits (77), Expect = 0.14
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 20/102 (19%)
Query: 10 MEAEQTKTRSE-LVHKETAARYNAAMGRMRQLEKKLKRAINK--------SKPYFELKAK 60
+E+E+ + +S+ L+ KET + LE KLK K S E+ +
Sbjct: 620 LESEKYELKSKVLIMKET----------IESLENKLKVQAQKFSHVAGDSSHQKTEVNSL 669
Query: 61 YYVQLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHE 102
V EQL+++VDD Q +L++ +GE + A ++++ ++I E
Sbjct: 670 RIVN-EQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDE 710
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 34.3 bits (77), Expect = 0.14
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 214 CSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQALENR 273
CS ++S + + A GAE ++ KA SSSS S SS S SS+S + +
Sbjct: 159 CSASTS---QGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDG 215
Query: 274 MKQ 276
K+
Sbjct: 216 RKK 218
>gi|62526045 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 34.3 bits (77), Expect = 0.14
Identities = 34/171 (19%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 11 EAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAI-NKSKPYFELKAKYYVQLEQLK 69
++++T+ R ++ ++ + A + + R+ +K +P F +V ++++
Sbjct: 1489 QSQETEARPSIMKRDDSNNKTLAEQNTKNPKSTTGRSSKSKEEPLFPFNLDEFVTVDEVI 1548
Query: 70 KTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERRRSSAMGPRGCGVGAEGSSTSVEDLP 129
+ V+ QAK KG+ K LKN+ S+ ++++ PR GV E S +++++
Sbjct: 1549 EEVNPSQAKQNPLKGKRKETLKNVP-FSELNLKKKKGKTSTPR--GVEGELSFVTLDEI- 1604
Query: 130 GSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQ 180
E DA + ++A + + E++ + + S+ + E+ DQ
Sbjct: 1605 --GEEEDAAAHLAQALV--TVDEVIDEEELNMEEMVKNSNSLFTLDELIDQ 1651
>gi|21626468 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 34.3 bits (77), Expect = 0.14
Identities = 34/171 (19%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 11 EAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAI-NKSKPYFELKAKYYVQLEQLK 69
++++T+ R ++ ++ + A + + R+ +K +P F +V ++++
Sbjct: 1489 QSQETEARPSIMKRDDSNNKTLAEQNTKNPKSTTGRSSKSKEEPLFPFNLDEFVTVDEVI 1548
Query: 70 KTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERRRSSAMGPRGCGVGAEGSSTSVEDLP 129
+ V+ QAK KG+ K LKN+ S+ ++++ PR GV E S +++++
Sbjct: 1549 EEVNPSQAKQNPLKGKRKETLKNVP-FSELNLKKKKGKTSTPR--GVEGELSFVTLDEI- 1604
Query: 130 GSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQ 180
E DA + ++A + + E++ + + S+ + E+ DQ
Sbjct: 1605 --GEEEDAAAHLAQALV--TVDEVIDEEELNMEEMVKNSNSLFTLDELIDQ 1651
>gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens]
Length = 506
Score = 33.9 bits (76), Expect = 0.18
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 206 PVLGPRSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTS 264
PV +E ASS E D + + + TSD ++++ SSSGSG SS S STS
Sbjct: 12 PVAHGVAEEEMASSTSDSGEESD-SSSSSSSTSDSSSSSSTSGSSSGSGSSSSSSGSTS 69
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 33.9 bits (76), Expect = 0.18
Identities = 25/90 (27%), Positives = 36/90 (40%)
Query: 96 ISDEIHERRRSSAMGPRGCGVGAEGSSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVS 155
+SD E SS+ E STS + S + S +S + S S S
Sbjct: 1003 VSDGEDEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSS 1062
Query: 156 EDDSETQSVSSFSSGPTSPSEMPDQFPAVV 185
ED+ E + ++ S P E+P PA V
Sbjct: 1063 EDEEEEERPAALPSASPPPREVPVPTPAPV 1092
Score = 33.1 bits (74), Expect = 0.30
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 218 SSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQA 269
SS +C + ++G + TSD +++ SSSS S SS S SS+S E +
Sbjct: 1013 SSSKCSLYAD--SDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSS 1062
Score = 28.9 bits (63), Expect = 5.7
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 211 RSECSGASSPECEVERGDRAEG-------------AENKTSDKANNNRGLSSSSGSGGSS 257
R E + E EV G+ E EN ++ + ++ SSSS S SS
Sbjct: 990 REEAVDTTKKETEVSDGEDEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSS 1049
Query: 258 KSQSSTSPEGQALENRMKQ 276
S SS+S + E+ ++
Sbjct: 1050 SSSSSSSSSESSSEDEEEE 1068
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 33.9 bits (76), Expect = 0.18
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 35/187 (18%)
Query: 117 GAEGSSTSVEDLPGSKPEPD----AISVASE----AFEDDSCSNFVSEDDSETQSVSSFS 168
G+EG + LP S P P+ ++VA A + SN S+ +E +S S
Sbjct: 1270 GSEGKPSLT--LPASAPGPEEALTTVTVAPAPRRAAAKSPDLSNQNSDQANEEWETASES 1327
Query: 169 SGPTSPSEMPDQFPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSECSGASSPECEVERGD 228
S TS R G + P PV L+ + P G G S+ + RGD
Sbjct: 1328 SDFTSE-----------RRGDKEAPPPVLLTPKAVGTPGGGGGGAVPGISA----MSRGD 1372
Query: 229 RAEGAENKTS----------DKANNNRGLSSSSGSGGSSKSQSSTSPEGQALENRMKQLS 278
++ A++ + ++ N G +GS GSS P G+ R + S
Sbjct: 1373 LSQRAKDLSKRSFSSQRPGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGRTGPGRGDKRS 1432
Query: 279 LQCSKGR 285
K R
Sbjct: 1433 WPSPKNR 1439
>gi|8923040 CDKN2A interacting protein [Homo sapiens]
Length = 580
Score = 33.9 bits (76), Expect = 0.18
Identities = 60/239 (25%), Positives = 94/239 (39%), Gaps = 24/239 (10%)
Query: 42 KKLKRAINKSKPYFELKAKYYVQLEQLKKTVDDLQAKLTLAKGEYKMALK--NLEMISDE 99
K KR I+ S E +K V + V+ AK T AK E A + + I
Sbjct: 124 KVKKRGISSSNEGVEEPSKKRVIEGKNSSAVEQDHAK-TSAKTERASAQQENSSTCIGSA 182
Query: 100 IHERRRSSAMGPRGCGVGAEGSSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDS 159
I +SA R G+ ++ SSTS D S ++S S + D
Sbjct: 183 IKSESGNSA---RSSGISSQNSSTSDGDRSVSSQSSSSVSSQVTTAGSGKASEAEAPDKH 239
Query: 160 ETQSV-----SSFSSGPTSPSEMPDQFPAVVRPGSLDLPSPVSLSEFGMMFPVLGPRSEC 214
+ S SS +S T ++ Q + + + S S + P+LG
Sbjct: 240 GSASFVSLLKSSVNSHMTQSTDSRQQSGSPKKSALEGSSASASQSSSEIEVPLLGS---- 295
Query: 215 SGASSPECEV-----ERGDRAEGAENKTSDKANNNRGLSSSSGSGGSS----KSQSSTS 264
SG+S E + + G +KTS +A+ + ++ +S S G+S KS SST+
Sbjct: 296 SGSSEVELPLLSSKPSSETASSGLTSKTSSEASVSSSVAKNSSSSGTSLLTPKSSSSTN 354
>gi|31377634 guanylate binding protein 4 [Homo sapiens]
Length = 640
Score = 33.9 bits (76), Expect = 0.18
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 7 QRVMEAEQTKTRSELVHKETAA---RYNAAMGRMRQLEKKLKRAINKSKPYFELKAKYYV 63
Q++MEA++ + + E R N R L+ KLK K F+ K+
Sbjct: 528 QQMMEAQERSFQEYMAQMEKKLEEERENLLREHERLLKHKLKVQEEMLKEEFQKKS---- 583
Query: 64 QLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISD 98
EQL K ++ L+ K+ K E LK L+M S+
Sbjct: 584 --EQLNKEINQLKEKIESTKNEQLRLLKILDMASN 616
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 33.9 bits (76), Expect = 0.18
Identities = 43/177 (24%), Positives = 62/177 (35%), Gaps = 31/177 (17%)
Query: 119 EGSSTSVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMP 178
+ SST S P + +E EDD S D +QS + S P ++ P
Sbjct: 256 QSSSTPTSTTSSSPIPPSPANCTTENSEDDK-KRGRSTDSEVSQSPAKNGSKPVHSNQHP 314
Query: 179 DQFPAV----------------VRPGSLDLPSPVSLSEFGMMFPVLGPR-----SECSGA 217
Q PAV PG+ +P+P + LGP+ S SG
Sbjct: 315 -QSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPS------ALGPKASPAPSHNSGT 367
Query: 218 SSPECEVERGDRAEGAENKTS--DKANNNRGLSSSSGSGGSSKSQSSTSPEGQALEN 272
+P + G + G SG GGSS S +S++ G +N
Sbjct: 368 PAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQN 424
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.23
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 211 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQAL 270
RS S SS G + +S A++ G SS+S S SS S S SP +
Sbjct: 76 RSRSSSTSSSGSSTSTGS----SSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
Query: 271 ENRMKQLSLQCSKGRD 286
+NR + S RD
Sbjct: 132 DNRRRSRSKSKPPKRD 147
Score = 33.1 bits (74), Expect = 0.30
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 211 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQAL 270
RS SG+SS + + + S +++ SS SGS +S+S SS+S G
Sbjct: 66 RSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
Query: 271 ENRMKQLSLQCSKGR 285
+R + + + S+ +
Sbjct: 126 PSRRRHDNRRRSRSK 140
Score = 32.7 bits (73), Expect = 0.40
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 211 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTS 264
RS+ GA+ E +RG S +++ R SSS+ S GSS S S+S
Sbjct: 42 RSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSS 95
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.23
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 211 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQAL 270
RS S SS G + +S A++ G SS+S S SS S S SP +
Sbjct: 76 RSRSSSTSSSGSSTSTGS----SSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
Query: 271 ENRMKQLSLQCSKGRD 286
+NR + S RD
Sbjct: 132 DNRRRSRSKSKPPKRD 147
Score = 33.1 bits (74), Expect = 0.30
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 211 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQAL 270
RS SG+SS + + + S +++ SS SGS +S+S SS+S G
Sbjct: 66 RSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
Query: 271 ENRMKQLSLQCSKGR 285
+R + + + S+ +
Sbjct: 126 PSRRRHDNRRRSRSK 140
Score = 32.7 bits (73), Expect = 0.40
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 211 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTS 264
RS+ GA+ E +RG S +++ R SSS+ S GSS S S+S
Sbjct: 42 RSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSS 95
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.23
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 211 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQAL 270
RS S SS G + +S A++ G SS+S S SS S S SP +
Sbjct: 76 RSRSSSTSSSGSSTSTGS----SSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
Query: 271 ENRMKQLSLQCSKGRD 286
+NR + S RD
Sbjct: 132 DNRRRSRSKSKPPKRD 147
Score = 33.1 bits (74), Expect = 0.30
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 211 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTS 264
RS+ GA+ E +RG + S +++ R SSS+ S GSS S S+S
Sbjct: 42 RSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSS 95
Score = 31.2 bits (69), Expect = 1.2
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 212 SECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQALE 271
S SG+SS + + + S +++ SS SGS +S+S SS+S G
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Query: 272 NRMKQLSLQCSKGR 285
+R + + + S+ +
Sbjct: 127 SRRRHDNRRRSRSK 140
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.23
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 211 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQAL 270
RS S SS G + +S A++ G SS+S S SS S S SP +
Sbjct: 76 RSRSSSTSSSGSSTSTGS----SSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
Query: 271 ENRMKQLSLQCSKGRD 286
+NR + S RD
Sbjct: 132 DNRRRSRSKSKPPKRD 147
Score = 33.1 bits (74), Expect = 0.30
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 211 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTS 264
RS+ GA+ E +RG + S +++ R SSS+ S GSS S S+S
Sbjct: 42 RSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSS 95
Score = 31.2 bits (69), Expect = 1.2
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 212 SECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQALE 271
S SG+SS + + + S +++ SS SGS +S+S SS+S G
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Query: 272 NRMKQLSLQCSKGR 285
+R + + + S+ +
Sbjct: 127 SRRRHDNRRRSRSK 140
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.23
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 211 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQAL 270
RS S SS G + +S A++ G SS+S S SS S S SP +
Sbjct: 76 RSRSSSTSSSGSSTSTGS----SSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
Query: 271 ENRMKQLSLQCSKGRD 286
+NR + S RD
Sbjct: 132 DNRRRSRSKSKPPKRD 147
Score = 33.1 bits (74), Expect = 0.30
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 211 RSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTS 264
RS+ GA+ E +RG + S +++ R SSS+ S GSS S S+S
Sbjct: 42 RSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSS 95
Score = 31.2 bits (69), Expect = 1.2
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 212 SECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSSTSPEGQALE 271
S SG+SS + + + S +++ SS SGS +S+S SS+S G
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
Query: 272 NRMKQLSLQCSKGR 285
+R + + + S+ +
Sbjct: 127 SRRRHDNRRRSRSK 140
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.124 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,324,271
Number of Sequences: 37866
Number of extensions: 539218
Number of successful extensions: 3983
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 3549
Number of HSP's gapped (non-prelim): 637
length of query: 298
length of database: 18,247,518
effective HSP length: 102
effective length of query: 196
effective length of database: 14,385,186
effective search space: 2819496456
effective search space used: 2819496456
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.