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Search of human proteins with 4557635
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557635 orexin precursor [Homo sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557635 orexin precursor [Homo sapiens] 266 3e-72
gi|169165478 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|169165887 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|169165071 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|48762934 alpha 2 type I collagen [Homo sapiens] 29 0.92
gi|10190748 CEGP1 protein [Homo sapiens] 29 0.92
gi|17402888 neuronal pentraxin receptor [Homo sapiens] 29 0.92
gi|18104969 prostaglandin-endoperoxide synthase 1 isoform 2 prec... 29 0.92
gi|18104967 prostaglandin-endoperoxide synthase 1 isoform 1 prec... 29 0.92
gi|169201955 PREDICTED: similar to hCG1793014 [Homo sapiens] 29 0.92
gi|169192125 PREDICTED: similar to UNCoordinated family member (... 29 0.92
gi|46488919 astrotactin 2 isoform c [Homo sapiens] 29 1.2
gi|46488917 astrotactin 2 isoform b [Homo sapiens] 29 1.2
gi|46488915 astrotactin 2 isoform a [Homo sapiens] 29 1.2
gi|239754006 PREDICTED: hypothetical protein [Homo sapiens] 29 1.2
gi|239748537 PREDICTED: hypothetical protein [Homo sapiens] 29 1.2
gi|239742520 PREDICTED: hypothetical protein [Homo sapiens] 29 1.2
gi|24308115 interferon regulatory factor 2 binding protein 1 [Ho... 29 1.2
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 29 1.2
gi|239755142 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|169171345 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239751156 PREDICTED: hypothetical protein LOC146429 isoform 6... 28 1.6
gi|169172205 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|169170949 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|61743978 stabilin 1 precursor [Homo sapiens] 28 1.6
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 28 1.6
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 28 1.6
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 28 1.6
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 28 1.6
gi|223634006 hypothetical protein LOC441869 [Homo sapiens] 28 2.1
>gi|4557635 orexin precursor [Homo sapiens]
Length = 131
Score = 266 bits (681), Expect = 3e-72
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MNLPSTKVSWAAVTLLLLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHA 60
MNLPSTKVSWAAVTLLLLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHA
Sbjct: 1 MNLPSTKVSWAAVTLLLLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHA 60
Query: 61 AGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAA 120
AGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAA
Sbjct: 61 AGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAA 120
Query: 121 ASVAPGGQSGI 131
ASVAPGGQSGI
Sbjct: 121 ASVAPGGQSGI 131
>gi|169165478 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 31.2 bits (69), Expect = 0.24
Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 75 GLQGRLQR--LLQASGNHAAGILTMGRRA---GAEPAPRPCL-GRRC 115
G + +LQR L + G G GRRA GAEPAP P L GRRC
Sbjct: 51 GAKSQLQRNFLFSSGGGTWPGPEAPGRRARTLGAEPAPGPGLSGRRC 97
>gi|169165887 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 31.2 bits (69), Expect = 0.24
Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 75 GLQGRLQR--LLQASGNHAAGILTMGRRA---GAEPAPRPCL-GRRC 115
G + +LQR L + G G GRRA GAEPAP P L GRRC
Sbjct: 51 GAKSQLQRNFLFSSGGGTWPGPEAPGRRARTLGAEPAPGPGLSGRRC 97
>gi|169165071 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 31.2 bits (69), Expect = 0.24
Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 75 GLQGRLQR--LLQASGNHAAGILTMGRRA---GAEPAPRPCL-GRRC 115
G + +LQR L + G G GRRA GAEPAP P L GRRC
Sbjct: 51 GAKSQLQRNFLFSSGGGTWPGPEAPGRRARTLGAEPAPGPGLSGRRC 97
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 29.3 bits (64), Expect = 0.92
Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 57 GNHAAGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCS 116
G A + GK G PGL+G + + A G A P P G R
Sbjct: 643 GERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPG-------AVGAPGPAGATGDRGE 695
Query: 117 APAAASVAPGGQSG 130
A AA P G G
Sbjct: 696 AGAAGPAGPAGPRG 709
>gi|10190748 CEGP1 protein [Homo sapiens]
Length = 999
Score = 29.3 bits (64), Expect = 0.92
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 11 AAVTLLLLLLLLPPALLSSGA 31
AA +LLLLLLLPP LL +GA
Sbjct: 11 AAWAVLLLLLLLPPLLLLAGA 31
>gi|17402888 neuronal pentraxin receptor [Homo sapiens]
Length = 500
Score = 29.3 bits (64), Expect = 0.92
Identities = 32/107 (29%), Positives = 35/107 (32%), Gaps = 40/107 (37%)
Query: 25 ALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHAAGILTLGKRRSGPPGLQGRLQRLL 84
A ++SGAAA P P R LHGAG A GPP L G
Sbjct: 43 ASVASGAAASPGPQ---------RSLSALHGAGGSA-----------GPPALPG------ 76
Query: 85 QASGNHAAGILTMGRRAGAEPA-PRPCLGRRCSAPAAASVAPGGQSG 130
A A P P P R P AA+ G Q G
Sbjct: 77 -------------APAASAHPLPPGPLFSRFLCTPLAAACPSGAQQG 110
>gi|18104969 prostaglandin-endoperoxide synthase 1 isoform 2
precursor [Homo sapiens]
Length = 562
Score = 29.3 bits (64), Expect = 0.92
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 16 LLLLLLLPP--ALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHAAGILTLGKRRSGP 73
LL LLLLPP LL+ A P+ CC C + + G + G SGP
Sbjct: 10 LLFLLLLPPLPVLLADPGAPTPVNPCC-YYPCQHQGICVRFGLDRYQCDCTRTG--YSGP 66
Query: 74 ----PGLQGRLQRLLQASGNHAAGILTMGR 99
PGL L+ L+ S + +LT GR
Sbjct: 67 NCTIPGLWTWLRNSLRPSPSFTHFLLTHGR 96
>gi|18104967 prostaglandin-endoperoxide synthase 1 isoform 1
precursor [Homo sapiens]
Length = 599
Score = 29.3 bits (64), Expect = 0.92
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 16 LLLLLLLPP--ALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHAAGILTLGKRRSGP 73
LL LLLLPP LL+ A P+ CC C + + G + G SGP
Sbjct: 10 LLFLLLLPPLPVLLADPGAPTPVNPCC-YYPCQHQGICVRFGLDRYQCDCTRTG--YSGP 66
Query: 74 ----PGLQGRLQRLLQASGNHAAGILTMGR 99
PGL L+ L+ S + +LT GR
Sbjct: 67 NCTIPGLWTWLRNSLRPSPSFTHFLLTHGR 96
>gi|169201955 PREDICTED: similar to hCG1793014 [Homo sapiens]
Length = 366
Score = 29.3 bits (64), Expect = 0.92
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 55 GAGNHAAGILTLGKRRSG-------PPGLQGRLQRLLQASGNHAAGILTMGRRAG-AEPA 106
G A G +TLG R+G PP GR R L+ G + +L AG +EP
Sbjct: 288 GDRRFAPGKVTLGGPRAGPPLAPAPPPPQSGRCPRWLRTGGRQRSPVLAAWSHAGKSEPR 347
Query: 107 P 107
P
Sbjct: 348 P 348
>gi|169192125 PREDICTED: similar to UNCoordinated family member
(unc-44) [Homo sapiens]
Length = 393
Score = 29.3 bits (64), Expect = 0.92
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 55 GAGNHAAGILTLGKRRSG-------PPGLQGRLQRLLQASGNHAAGILTMGRRAG-AEPA 106
G A G +TLG R+G PP GR R L+ G + +L AG +EP
Sbjct: 315 GDRRFAPGKVTLGGPRAGPPLAPAPPPPQSGRCPRWLRTGGRQRSPVLAAWSHAGKSEPR 374
Query: 107 P 107
P
Sbjct: 375 P 375
>gi|46488919 astrotactin 2 isoform c [Homo sapiens]
Length = 1339
Score = 28.9 bits (63), Expect = 1.2
Identities = 20/33 (60%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 15 LLLLLLLLPPALLSSG--AAAQPLPDC-CRQKT 44
LLL LLLLPP L +G AAA PD CR KT
Sbjct: 35 LLLFLLLLPPPPLLAGATAAASREPDSPCRLKT 67
>gi|46488917 astrotactin 2 isoform b [Homo sapiens]
Length = 1335
Score = 28.9 bits (63), Expect = 1.2
Identities = 20/33 (60%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 15 LLLLLLLLPPALLSSG--AAAQPLPDC-CRQKT 44
LLL LLLLPP L +G AAA PD CR KT
Sbjct: 35 LLLFLLLLPPPPLLAGATAAASREPDSPCRLKT 67
>gi|46488915 astrotactin 2 isoform a [Homo sapiens]
Length = 1288
Score = 28.9 bits (63), Expect = 1.2
Identities = 20/33 (60%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 15 LLLLLLLLPPALLSSG--AAAQPLPDC-CRQKT 44
LLL LLLLPP L +G AAA PD CR KT
Sbjct: 35 LLLFLLLLPPPPLLAGATAAASREPDSPCRLKT 67
>gi|239754006 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 28.9 bits (63), Expect = 1.2
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 45 CSCRLYELLHGAGNHAAGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAE 104
CS + +G + AG + + G G GRL + A +H L +G R AE
Sbjct: 48 CSSQFTVRRNGLSHTTAG--SPPRLTEGAGGFLGRLGQCQAARDDH----LDLGARDAAE 101
Query: 105 PAPRPCLGRRCSAPAAASVAPGGQSG 130
P + + VAPGG G
Sbjct: 102 APAAPKVAEARQGWGGSGVAPGGNRG 127
>gi|239748537 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 28.9 bits (63), Expect = 1.2
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 45 CSCRLYELLHGAGNHAAGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAE 104
CS + +G + AG + + G G GRL + A +H L +G R AE
Sbjct: 48 CSSQFTVRRNGLSHTTAG--SPPRLTEGAGGFLGRLGQCQAARDDH----LDLGARDAAE 101
Query: 105 PAPRPCLGRRCSAPAAASVAPGGQSG 130
P + + VAPGG G
Sbjct: 102 APAAPKVAEARQGWGGSGVAPGGNRG 127
>gi|239742520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 28.9 bits (63), Expect = 1.2
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 45 CSCRLYELLHGAGNHAAGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAE 104
CS + +G + AG + + G G GRL + A +H L +G R AE
Sbjct: 48 CSSQFTVRRNGLSHTTAG--SPPRLTEGAGGFLGRLGQCQAARDDH----LDLGARDAAE 101
Query: 105 PAPRPCLGRRCSAPAAASVAPGGQSG 130
P + + VAPGG G
Sbjct: 102 APAAPKVAEARQGWGGSGVAPGGNRG 127
>gi|24308115 interferon regulatory factor 2 binding protein 1 [Homo
sapiens]
Length = 584
Score = 28.9 bits (63), Expect = 1.2
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 55 GAGNHAAGILTLGKR------RSGPPGLQGRLQRLLQASGNHAAG-------ILTMGRRA 101
G+GN AG+L + ++ R L + L+ H +G +LT G R+
Sbjct: 281 GSGNVYAGVLAVARQMFHDALREPGKALASSGFKYLEYERRHGSGEWRQLGELLTDGVRS 340
Query: 102 GAEPAPRPCLGRRCSAPAAASV 123
EPAP L ++ PA A++
Sbjct: 341 FREPAPAEALPQQYPEPAPAAL 362
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 28.9 bits (63), Expect = 1.2
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 66 LGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEP---------APRPCLGRRCS 116
L GPPG +R + AG T R G EP AP+ CL R
Sbjct: 446 LPDEEKGPPGPAPEPEREAETEPERGAG--TEPERIGTEPSTAPAPSPPAPKSCLKHR-- 501
Query: 117 APAAASVAP 125
PAAAS P
Sbjct: 502 -PAAASEGP 509
>gi|239755142 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 28.5 bits (62), Expect = 1.6
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 30 GAAAQPLPDCCRQKTCSCRLYELLHGAGNHAAGILTLGKRRSGPPGLQGRLQRLLQASGN 89
G+ + PL R RL++ GAG AAG G+RRS G L +
Sbjct: 102 GSCSAPLGPARRCSARRPRLHQ--GGAGRLAAGGAEAGERRSPNRGATSSLSPI------ 153
Query: 90 HAAGILTMGRRAGAEPAPR 108
A G G R+ AE PR
Sbjct: 154 -ARGAADTGVRSAAEDPPR 171
Score = 26.6 bits (57), Expect = 6.0
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 67 GKRRSGPPGL--QGRLQRLLQASGNHAAGILTMGRRAG--AEPAPRPCLGR 113
G+R PGL +GR + LL A A +L GRRAG AEP P P R
Sbjct: 18 GRRGERRPGLRSEGRRKGLLAAEAGGA--VLGGGRRAGRRAEP-PEPSYSR 65
>gi|169171345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 88 GNHAAGILTMGRRAG----AEPAPRPCLGRRCSAPAAASVAPGGQS 129
G AAG G + G A AP+P GR CS +A + GG++
Sbjct: 149 GRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGKA 194
>gi|239751156 PREDICTED: hypothetical protein LOC146429 isoform 6
[Homo sapiens]
Length = 560
Score = 28.5 bits (62), Expect = 1.6
Identities = 32/112 (28%), Positives = 37/112 (33%), Gaps = 19/112 (16%)
Query: 9 SWAAVTLLLLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHAAGILTLGK 68
SW +L L+L L AQP P C T L G A I LG
Sbjct: 25 SWVPCIVLGLVLSSEELL-----TAQPAPHCRPDPTLLPPALRALRGPALLDAAIPRLGP 79
Query: 69 RRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAA 120
R+ P L G+L+ A APRP CS AA
Sbjct: 80 TRAASPCL--------------PLGVLSPSYLAPLTRAPRPSSWASCSGAAA 117
>gi|169172205 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 88 GNHAAGILTMGRRAG----AEPAPRPCLGRRCSAPAAASVAPGGQS 129
G AAG G + G A AP+P GR CS +A + GG++
Sbjct: 149 GRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGKA 194
>gi|169170949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 88 GNHAAGILTMGRRAG----AEPAPRPCLGRRCSAPAAASVAPGGQS 129
G AAG G + G A AP+P GR CS +A + GG++
Sbjct: 149 GRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGKA 194
>gi|61743978 stabilin 1 precursor [Homo sapiens]
Length = 2570
Score = 28.5 bits (62), Expect = 1.6
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 19/105 (18%)
Query: 37 PDCCRQKTCSCRLYELLHGAGNHA----------AGILTLGKRRSGPPGLQGRLQRLLQA 86
PDC Q CSC +HG NH AG + P + R + Q
Sbjct: 158 PDC--QSVCSC-----VHGVCNHGPRGDGSCLCFAGYTGPHCDQELPVCQELRCPQNTQC 210
Query: 87 SGNHAAGILTMG-RRAGAE-PAPRPCLGRRCSAPAAASVAPGGQS 129
S + G + G+E AP PC CS A SV+P GQ+
Sbjct: 211 SAEAPSCRCLPGYTQQGSECRAPNPCWPSPCSLLAQCSVSPKGQA 255
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 28.5 bits (62), Expect = 1.6
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 24 PALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHAAGILTLGKRRSGPPGLQGRLQRL 83
P + AAA P P +++ S R G G AAG G+RR R +R
Sbjct: 343 PRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAG--GAGRRR--------RRRRR 392
Query: 84 LQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAAASVAPGG 127
+ S + A+ GRR P P P G S A S + G
Sbjct: 393 RRRSRSSASAPRRRGRR---RPRPAPPRGSSRSLSRARSSSDSG 433
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 28.5 bits (62), Expect = 1.6
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 17 LLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHAAGILTLGKRRSGPPGL 76
+LL+LL ALL+ +A D ++++ S AGN G + GPP
Sbjct: 1 MLLILLSVALLALSSAQNLNEDVSQEESPSLI-------AGNPQGPSPQGGNKPQGPPPP 53
Query: 77 QGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAAASVAPGGQSG 130
G+ Q GN G G+ G P P+ R +P P Q G
Sbjct: 54 PGKPQGPPPQGGNKPQGPPPPGKPQG--PPPQGDKSRSPRSPPGKPQGPPPQGG 105
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 28.5 bits (62), Expect = 1.6
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 17 LLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHAAGILTLGKRRSGPPGL 76
+LL+LL ALL+ +A D ++++ S AGN G + GPP
Sbjct: 1 MLLILLSVALLALSSAQNLNEDVSQEESPSLI-------AGNPQGPSPQGGNKPQGPPPP 53
Query: 77 QGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAAASVAPGGQSG 130
G+ Q GN G G+ G P P+ R +P P Q G
Sbjct: 54 PGKPQGPPPQGGNKPQGPPPPGKPQG--PPPQGDKSRSPRSPPGKPQGPPPQGG 105
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 28.5 bits (62), Expect = 1.6
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 17 LLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHAAGILTLGKRRSGPPGL 76
+LL+LL ALL+ +A D ++++ S AGN G + GPP
Sbjct: 1 MLLILLSVALLALSSAQNLNEDVSQEESPSLI-------AGNPQGPSPQGGNKPQGPPPP 53
Query: 77 QGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAAASVAPGGQSG 130
G+ Q GN G G+ G P P+ R +P P Q G
Sbjct: 54 PGKPQGPPPQGGNKPQGPPPPGKPQG--PPPQGDKSRSPRSPPGKPQGPPPQGG 105
>gi|223634006 hypothetical protein LOC441869 [Homo sapiens]
Length = 399
Score = 28.1 bits (61), Expect = 2.1
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 66 LGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGR 113
LG R GP +QG LLQA AG++T R GA R GR
Sbjct: 29 LGTRTEGPSVVQG-WGHLLQAVWRGPAGLVTQLLRQGASVEERDHAGR 75
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,418,237
Number of Sequences: 37866
Number of extensions: 329748
Number of successful extensions: 1530
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 1467
Number of HSP's gapped (non-prelim): 120
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.