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Search of human proteins with 4557495
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557495 cleavage stimulation factor subunit 3 isoform 1
[Homo sapiens]
(717 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo... 1447 0.0
gi|75709187 cleavage stimulation factor subunit 3 isoform 2 [Hom... 155 1e-37
gi|75709189 cleavage stimulation factor subunit 3 isoform 3 [Hom... 89 1e-17
gi|124256489 crooked neck-like 1 protein [Homo sapiens] 73 1e-12
gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo s... 67 6e-11
gi|7661952 squamous cell carcinoma antigen recognized by T cells... 57 5e-08
gi|70980549 programmed cell death 11 [Homo sapiens] 52 2e-06
gi|49574529 hepatocellular carcinoma-associated antigen 66 [Homo... 40 0.010
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 40 0.010
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 40 0.010
gi|55770906 XPA binding protein 2 [Homo sapiens] 40 0.010
gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom... 37 0.083
gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo... 37 0.083
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens] 37 0.083
gi|196114970 protein tyrosine phosphatase, non-receptor type 12 ... 35 0.19
gi|196114967 protein tyrosine phosphatase, non-receptor type 12 ... 35 0.19
gi|196114951 protein tyrosine phosphatase, non-receptor type 12 ... 35 0.19
gi|110349719 titin isoform N2-A [Homo sapiens] 35 0.24
gi|148612835 zinc finger protein 207 isoform c [Homo sapiens] 34 0.41
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens] 34 0.41
gi|73808090 zinc finger protein 207 isoform b [Homo sapiens] 34 0.41
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 33 0.70
gi|33356148 formin-like 1 [Homo sapiens] 33 0.70
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 33 0.92
gi|24430141 fibrillin 1 precursor [Homo sapiens] 33 1.2
gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens] 32 1.6
gi|4758216 dishevelled 2 [Homo sapiens] 32 1.6
gi|153792074 proline rich 12 [Homo sapiens] 32 1.6
gi|5031763 hairy and enhancer of split 1 [Homo sapiens] 32 2.0
gi|241982780 programmed cell death 6 interacting protein isoform... 32 2.0
>gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo
sapiens]
Length = 717
Score = 1447 bits (3747), Expect = 0.0
Identities = 717/717 (100%), Positives = 717/717 (100%)
Query: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ 60
MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
Sbjct: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ 60
Query: 61 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE 120
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
Sbjct: 61 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE 120
Query: 121 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 180
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
Sbjct: 121 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 180
Query: 181 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 240
INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
Sbjct: 181 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 240
Query: 241 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY 300
NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
Sbjct: 241 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY 300
Query: 301 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 360
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH
Sbjct: 301 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 360
Query: 361 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY 420
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY
Sbjct: 361 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY 420
Query: 421 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 480
YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK
Sbjct: 421 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 480
Query: 481 SGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASE 540
SGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASE
Sbjct: 481 SGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASE 540
Query: 541 LKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPP 600
LKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPP
Sbjct: 541 LKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPP 600
Query: 601 GLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIIT 660
GLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIIT
Sbjct: 601 GLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIIT 660
Query: 661 GGAPELAVEGNGPVESNAVLTKAVKRPNEDSDEDEEKGAVVPPVHDIYRARQQKRIR 717
GGAPELAVEGNGPVESNAVLTKAVKRPNEDSDEDEEKGAVVPPVHDIYRARQQKRIR
Sbjct: 661 GGAPELAVEGNGPVESNAVLTKAVKRPNEDSDEDEEKGAVVPPVHDIYRARQQKRIR 717
>gi|75709187 cleavage stimulation factor subunit 3 isoform 2 [Homo
sapiens]
Length = 103
Score = 155 bits (392), Expect = 1e-37
Identities = 75/76 (98%), Positives = 76/76 (100%)
Query: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ 60
MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
Sbjct: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ 60
Query: 61 FPSSGRFWKLYIEAEI 76
FPSSGRFWKLYIEAE+
Sbjct: 61 FPSSGRFWKLYIEAEV 76
>gi|75709189 cleavage stimulation factor subunit 3 isoform 3 [Homo
sapiens]
Length = 44
Score = 89.4 bits (220), Expect = 1e-17
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ 43
MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ
Sbjct: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ 43
>gi|124256489 crooked neck-like 1 protein [Homo sapiens]
Length = 848
Score = 72.8 bits (177), Expect = 1e-12
Identities = 112/554 (20%), Positives = 212/554 (38%), Gaps = 99/554 (17%)
Query: 8 EQAAEYVPEKVKKAEKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGR 66
E+ +Y K K E + +N + W + E + I +AR YER + +
Sbjct: 218 EELNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNIT 277
Query: 67 FWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAY 126
W Y E E+K + + ++ R + + ++ + +Y+ E G + ++ +
Sbjct: 278 LWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWM 337
Query: 127 DFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR-GCVNPMINIEQ 185
++ ++ Q W YINF + + R +Y+R V+P + +
Sbjct: 338 EWQPEE--------QAWHSYINF---------ELRYKEVDRARTIYERFVLVHPDV---K 377
Query: 186 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVP------- 238
W Y ++EE + + +R+ ++ + + + N
Sbjct: 378 NWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYK 437
Query: 239 ---PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWY 295
+ + Q+AQ +++K Y +EK R + +I + F YE+ + H+ D W+
Sbjct: 438 YALDRISKQDAQ--ELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWF 495
Query: 296 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKNMLLYFAYA 347
+ + +E ++ ++ +YERAI+ + K+ + L+ YA
Sbjct: 496 DYLRLVESDAE--------------AEAVREVYERAIANVPPIQEKRHWKRYIYLWINYA 541
Query: 348 DYEESRMK-YEKVHSIYN---RLLAIEDIDPTLVYIQYMKF---------ARRAEGIKSG 394
YEE K E+ +Y L+ + ++I Y +F ARRA G G
Sbjct: 542 LYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIG 601
Query: 395 R----MIFK-------KAREDTRTRHHVYVTAALMEYYCSK------------DKSVAFK 431
+ +FK + RE R R C+ D A
Sbjct: 602 KCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARA 661
Query: 432 IFELGLKKYG-DIPEYV-LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 489
I+EL + + D+PE + +YID+ E TR L+ R+L + ++W F
Sbjct: 662 IYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQR-----TQHVKVWISFA 716
Query: 490 AFESNIGDLASILK 503
FE + G S+ K
Sbjct: 717 QFELSSGKEGSLTK 730
Score = 55.8 bits (133), Expect = 1e-07
Identities = 89/419 (21%), Positives = 168/419 (40%), Gaps = 72/419 (17%)
Query: 155 AVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMI--EDRSRD 212
A + A QRI V +V + I EQL R+ + E + ++ I E+ D
Sbjct: 163 AASTAAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELND 222
Query: 213 YMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLI 272
Y +R K +E N + + W KY QWE+S
Sbjct: 223 YKLRKR--KTFE---------------DNIRKNRTVISNWIKYAQWEES--------LKE 257
Query: 273 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 332
+R YE+ L V + +W + A+ +M N ++ + A NI++RAI
Sbjct: 258 IQRARSIYERALDVDYRNITLWLKYAEM------------EMKNRQV--NHARNIWDRAI 303
Query: 333 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 392
+TL + N ++ Y EE ++ R + + + + Y+ F R + +
Sbjct: 304 TTLPRVNQ-FWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQ--AWHSYINFELRYKEVD 360
Query: 393 SGRMIFKK---AREDTRTRHHVYVTAALMEYYCSKDKSVAF----KIFELGLKKYGD--I 443
R I+++ D + ++Y ++K F K++E ++ +GD +
Sbjct: 361 RARTIYERFVLVHPDVKN---------WIKYARFEEKHAYFAHARKVYERAVEFFGDEHM 411
Query: 444 PEYV-LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI- 501
E++ +A+ + + E RV+++ L + + + E++ + FE GD I
Sbjct: 412 DEHLYVAFAKFEENQKEFERVRVIYKYAL--DRISKQDAQELFKNYTIFEKKFGDRRGIE 469
Query: 502 -LKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASELKALGYKDVSRAKLAAIIP 559
+ V KRRF +YE + A + + D S+ +A ++V +A + P
Sbjct: 470 DIIVSKRRF-----QYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPP 523
Score = 43.9 bits (102), Expect = 5e-04
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 29/191 (15%)
Query: 19 KKAEKKLEENPYDLDAWSILIREAQN--QPIDKARKTYERLVAQ--FPSSGRFWKLYIEA 74
K EK LE P + +W I E + ID+AR YE ++Q WK YI+
Sbjct: 627 KLYEKFLEFGPENCTSW-IKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDF 685
Query: 75 EIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE----KMAQAYDFA- 129
EI+ + ++ L++R L + H+ +W + + +L S KE K Q Y+ A
Sbjct: 686 EIEQEETERTRNLYRRLLQRTQHVKVWISFAQF------ELSSGKEGSLTKCRQIYEEAN 739
Query: 130 -----LDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV--RRVYQRGCVNPMIN 182
++ +M + W + E G+ ++ +R+ + +V +R V
Sbjct: 740 KTMRNCEEKEERLMLLESWRSF------EEEFGTASDKERVDKLMPEKVKKRRKVQTDDG 793
Query: 183 IEQLWRDYNKY 193
+ W +Y Y
Sbjct: 794 SDAGWEEYFDY 804
>gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo
sapiens]
Length = 669
Score = 67.0 bits (162), Expect = 6e-11
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 7 TEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREA-QNQPIDKARKTYERLVAQFPSSG 65
TE A + PE +K K +E NP D W L++ Q + ARK ++R +P
Sbjct: 71 TETEANFPPE-YEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDRFFIHYPYCY 129
Query: 66 RFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYLSYVRETKGK-LPSYKEKMA 123
+WK Y + E + N +++++R L + L +DLW Y+++++ET P +
Sbjct: 130 GYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIR 189
Query: 124 QAYDFALDKIGMEIMSYQIWVDYINF 149
++ A+ G + S ++W YIN+
Sbjct: 190 GTFEHAVLAAGTDFRSDRLWEMYINW 215
Score = 43.9 bits (102), Expect = 5e-04
Identities = 56/290 (19%), Positives = 116/290 (40%), Gaps = 38/290 (13%)
Query: 243 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE 302
P E Q+ WK+Y+++E N +RV+ +E+C++ + + W + A+Y+E
Sbjct: 347 PLEKAQLKNWKEYLEFEIENGTH--------ERVVVLFERCVISCALYEEFWIKYAKYME 398
Query: 303 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 362
S + +++ RA + L K +++ +A +EE + ++
Sbjct: 399 NHS---------------IEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQ---GNINEA 440
Query: 363 YNRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY 420
N L E+ + +V ++ + RR ++ + + A ++ ++ + A +
Sbjct: 441 RNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLAR 500
Query: 421 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS-------HLNEDNNTRVLFERVLTS 473
+ K + K ++ L+ E Y++ L NE+N + V
Sbjct: 501 HLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAV--H 558
Query: 474 GSLPPEKSGEIWARFLAFESNIG-DLASILKVEKRRFTAFKEEYEGKETA 522
GSLP + R + F + G D+ +L T KE+ K A
Sbjct: 559 GSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKA 608
Score = 35.8 bits (81), Expect = 0.14
Identities = 39/207 (18%), Positives = 85/207 (41%), Gaps = 14/207 (6%)
Query: 68 WKLYIEAEIKAKNYDKVEKLFQRCLMK-VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAY 126
WK Y+E EI+ +++V LF+RC++ L+ + W Y Y+ + + ++A
Sbjct: 356 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYME--NHSIEGVRHVFSRAC 413
Query: 127 DFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 186
L K + M + +W + E G+ E + I G + L
Sbjct: 414 TIHLPK---KPMVHMLWAAF------EEQQGNINEARNILKTFEECVLGLAMVRLRRVSL 464
Query: 187 WRDYNKYEEGIN-IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 245
R + EE + + A K + + A ++A+ + K L ++ V + ++
Sbjct: 465 ERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSR-KVLLEAIERD 523
Query: 246 AQQVDMWKKYIQWEKSNPLRTEDQTLI 272
+ ++ ++ E S L+ ++ ++
Sbjct: 524 KENTKLYLNLLEMEYSGDLKQNEENIL 550
>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
[Homo sapiens]
Length = 963
Score = 57.4 bits (137), Expect = 5e-08
Identities = 63/299 (21%), Positives = 130/299 (43%), Gaps = 43/299 (14%)
Query: 17 KVKKAEKKLEENPYDLDAWSILIREAQNQ-PIDKARKTYERLVAQFPSSGRFWKLYIEAE 75
++++ E++L N YD + LIR + + + K R +++ FP + W ++ E
Sbjct: 97 EIERLEEQLSINVYDYNCHVDLIRLLRLEGELTKVRMARQKMSEIFPLTEELWLEWLHDE 156
Query: 76 IKAK----NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALD 131
I + + V LF++ + + ++W Y Y G+ EK+ ++ AL
Sbjct: 157 ISMAQDGLDREHVYDLFEKAVKDYICPNIWLEYGQYSVGGIGQKGGL-EKVRSVFERALS 215
Query: 132 KIGMEIMS-YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDY 190
+G+ + +W Y F + E R+ V +++R P+ ++E + +Y
Sbjct: 216 SVGLHMTKGLALWEAYREFESAI------VEAARLEKVHSLFRRQLAIPLYDMEATFAEY 269
Query: 191 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 250
++ E + E ++Y A + ++Y+ + L EA ++
Sbjct: 270 EEWSED-------PIPESVIQNYNKALQQLEKYKPYEEAL-----------LQAEAPRLA 311
Query: 251 MWKKYIQWEKS--NPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 307
++ YI +E +P R + LI +R + E CL+ PD+W +QYL++ K+
Sbjct: 312 EYQAYIDFEMKIGDPARIQ---LIFERALV--ENCLV-----PDLWIRYSQYLDRQLKV 360
Score = 49.7 bits (117), Expect = 9e-06
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 46/206 (22%)
Query: 291 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---LKKNMLLYFAYA 347
P+IW E QY S + +KG + + +++ERA+S++ + K + L+ AY
Sbjct: 183 PNIWLEYGQY---SVGGIGQKGGLEKVR-------SVFERALSSVGLHMTKGLALWEAYR 232
Query: 348 DYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 404
++E + + + EKVHS++ R LAI D + +Y +++ ED
Sbjct: 233 EFESAIVEAARLEKVHSLFRRQLAIPLYDMEATFAEYEEWS-----------------ED 275
Query: 405 TRTRHHVYVTAALMEYYCSKDKSVAFKIFELGL--KKYGDIPEYVLAYIDYLSHLNEDNN 462
+ + Y + + +K +E L + + EY AYID+ + +
Sbjct: 276 P------IPESVIQNYNKALQQLEKYKPYEEALLQAEAPRLAEY-QAYIDFEMKIGDPAR 328
Query: 463 TRVLFERVLTSGSLPPEKSGEIWARF 488
+++FER L L P ++W R+
Sbjct: 329 IQLIFERALVENCLVP----DLWIRY 350
Score = 32.0 bits (71), Expect = 2.0
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 425 DKSVAFKIFELGLKKYGDIPEYVLAYIDY----LSHLNEDNNTRVLFERVLTSGSLPPEK 480
D+ + +FE +K Y P L Y Y + R +FER L+S L K
Sbjct: 165 DREHVYDLFEKAVKDY-ICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTK 223
Query: 481 SGEIWARFLAFESNIGDLASILKV 504
+W + FES I + A + KV
Sbjct: 224 GLALWEAYREFESAIVEAARLEKV 247
Score = 30.0 bits (66), Expect = 7.8
Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 15/167 (8%)
Query: 298 AQYLEQSSKLLAEKGDMN-NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 356
A+Y E S + E N N L E YE A+ + Y AY D+E
Sbjct: 267 AEYEEWSEDPIPESVIQNYNKALQQLEKYKPYEEALLQAEAPRLAEYQAYIDFEMKIGDP 326
Query: 357 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAA 416
++ I+ R L + P L +I+Y ++ R +K + + R+ + A
Sbjct: 327 ARIQLIFERALVENCLVPDL-WIRYSQYLDRQLKVKD----LVLSVHNRAIRNCPWTVAL 381
Query: 417 LMEYYCSKDK--------SVAF-KIFELGLKKYGDIPEYVLAYIDYL 454
Y + ++ SV F K G + D E AY+DYL
Sbjct: 382 WSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEIWQAYLDYL 428
>gi|70980549 programmed cell death 11 [Homo sapiens]
Length = 1871
Score = 51.6 bits (122), Expect = 2e-06
Identities = 54/231 (23%), Positives = 99/231 (42%), Gaps = 14/231 (6%)
Query: 300 YLEQSSKLLAEKGDMNNAKLFSDEAA--NIYERAISTLLKKNMLLYFAYADYEESRMKYE 357
+ E+ KL +N ++ + + ++ERA+ + + ++ AD K++
Sbjct: 1651 FREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQ--YNEPLKVFLHLADIYAKSEKFQ 1708
Query: 358 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTA-- 415
+ +YNR+L V+I+Y F R + + ++A E ++ HV V A
Sbjct: 1709 EAGELYNRMLK-RFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKF 1767
Query: 416 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 475
A +E+ D A IFE L Y + YID + R +FERV+ S
Sbjct: 1768 AQLEFQLG-DAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHL-S 1825
Query: 476 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVD 526
L P++ + R+L +E G + V+ + EY ++++L D
Sbjct: 1826 LAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL-----EYVEAKSSVLED 1871
Score = 33.1 bits (74), Expect = 0.92
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 41 EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL 100
E Q ++A+ +E ++ +P W +YI+ IK + V +F+R V+H+ L
Sbjct: 1771 EFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFER----VIHLSL 1826
Query: 101 --------WKCYLSYVRE 110
+K YL Y ++
Sbjct: 1827 APKRMKFFFKRYLDYEKQ 1844
Score = 31.6 bits (70), Expect = 2.7
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 2 SGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSI--LIREAQNQPIDKARKTYERLVA 59
S D ++ K K E++LE+ + + I + + QP ++ ++RLV
Sbjct: 1556 SSDSEEDEKPHQATIKKSKKERELEKQKAEKELSRIEEALMDPGRQP--ESADDFDRLVL 1613
Query: 60 QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 95
P+S W Y+ ++A +K + +R L +
Sbjct: 1614 SSPNSSILWLQYMAFHLQATEIEKARAVAERALKTI 1649
>gi|49574529 hepatocellular carcinoma-associated antigen 66 [Homo
sapiens]
Length = 597
Score = 39.7 bits (91), Expect = 0.010
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 296 EAAQYLEQSSKLLAEKGDMNNAKLF------SDEAANIYERAISTLLKKNML-LYFAYAD 348
EA + ++L + G M KL S + A ++E A L + L L+ ++A+
Sbjct: 387 EALEVAVAGTELFRDSGTMWQLKLQVLIESKSPDIAMLFEEAFVHLKPQVCLPLWISWAE 446
Query: 349 YEESRMKYEKVHSIYNR-LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 403
+ E E +++ + LLA+ D + +Y+ +A R+ G K R +FK +E
Sbjct: 447 WSEGAKSQEDTEAVFKKALLAVIGADSVTLKNKYLDWAYRSGGYKKARAVFKSLQE 502
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 39.7 bits (91), Expect = 0.010
Identities = 43/206 (20%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 192 KYEEGIN-IHLAKKMIEDRSRDYMNARRVAKE-------YETVMKGLDRNAPSVPPQNTP 243
K EE N +H +KM++ +S++ A+ + K+ + + + LD + Q+
Sbjct: 3691 KIEEINNGLHNVEKMLQQKSKNIEKAQEIQKKMWDELDLWHSKLNELDSEVQDIVEQDPG 3750
Query: 244 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ 303
Q + +D Q + R E +T + E+ + D+ ++E
Sbjct: 3751 QAQEWMDNLMIPFQQYQQVSQRAECRTSQLNKATVKMEE-------YSDLLKSTEAWIEN 3803
Query: 304 SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE------ 357
+S LLA D ++ + S A+ + + A+ +K+ LL+ + D E+ + +E
Sbjct: 3804 TSHLLANPADYDSLRTLSHHASTV-QMALEDSEQKHNLLHSIFMDLEDLSIIFETDELTQ 3862
Query: 358 KVHSIYNRLLAIED-IDPTLVYIQYM 382
+ + N++ A++ I +L IQ M
Sbjct: 3863 SIQELSNQVTALQQKIMESLPQIQRM 3888
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 39.7 bits (91), Expect = 0.010
Identities = 43/206 (20%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 192 KYEEGIN-IHLAKKMIEDRSRDYMNARRVAKE-------YETVMKGLDRNAPSVPPQNTP 243
K EE N +H +KM++ +S++ A+ + K+ + + + LD + Q+
Sbjct: 3691 KIEEINNGLHNVEKMLQQKSKNIEKAQEIQKKMWDELDLWHSKLNELDSEVQDIVEQDPG 3750
Query: 244 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ 303
Q + +D Q + R E +T + E+ + D+ ++E
Sbjct: 3751 QAQEWMDNLMIPFQQYQQVSQRAECRTSQLNKATVKMEE-------YSDLLKSTEAWIEN 3803
Query: 304 SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE------ 357
+S LLA D ++ + S A+ + + A+ +K+ LL+ + D E+ + +E
Sbjct: 3804 TSHLLANPADYDSLRTLSHHASTV-QMALEDSEQKHNLLHSIFMDLEDLSIIFETDELTQ 3862
Query: 358 KVHSIYNRLLAIED-IDPTLVYIQYM 382
+ + N++ A++ I +L IQ M
Sbjct: 3863 SIQELSNQVTALQQKIMESLPQIQRM 3888
>gi|55770906 XPA binding protein 2 [Homo sapiens]
Length = 855
Score = 39.7 bits (91), Expect = 0.010
Identities = 67/344 (19%), Positives = 124/344 (36%), Gaps = 76/344 (22%)
Query: 22 EKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY 81
E+++ N + + W I Q P + + YER + P S + W Y++A
Sbjct: 25 EEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKA------- 77
Query: 82 DKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ 141
+ ++ RC+ + D+ C+ +A+ F M M +
Sbjct: 78 -RRAQVKHRCVTDPAYEDVNNCH------------------ERAFVF------MHKMP-R 111
Query: 142 IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC-VNPMINIEQLWRDYNKYEEGINIH 200
+W+DY FL + R+T RR + R P+ ++W Y ++ + H
Sbjct: 112 LWLDYCQFL---------MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRF---LRSH 159
Query: 201 -LAKKMIEDRSRDYMNARRVAKEYETVMKGLD-------RNAPSVPPQNTPQEA--QQVD 250
L + + R + A+EY +K D R A V + +A
Sbjct: 160 PLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQ 219
Query: 251 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 310
+W + NP + + L I ++ +Q KL
Sbjct: 220 LWHELCDLISQNPDKVQS------------------LNVDAIIRGGLTRFTDQLGKLWCS 261
Query: 311 KGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYEES 352
D ++A ++YE AI T++ + ++ +YA +EES
Sbjct: 262 LADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEES 305
>gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Homo
sapiens]
Length = 728
Score = 36.6 bits (83), Expect = 0.083
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 558 IPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLA---PPGLHPVPGGVFPVPP 614
+P P P PV V P P+P ++ P + PP +H V P+PP
Sbjct: 511 VPRPPTMPP--PVRTTVVSAVPVMPRPPMASVVRLPPGSVIAPMPPIIHAPRINVVPMPP 568
Query: 615 AAVVLMKLLPPPICFQGPFV 634
+A +M PPP+ FV
Sbjct: 569 SAPPIMAPRPPPMIVPTAFV 588
>gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo
sapiens]
Length = 793
Score = 36.6 bits (83), Expect = 0.083
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 558 IPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLA---PPGLHPVPGGVFPVPP 614
+P P P PV V P P+P ++ P + PP +H V P+PP
Sbjct: 576 VPRPPTMPP--PVRTTVVSAVPVMPRPPMASVVRLPPGSVIAPMPPIIHAPRINVVPMPP 633
Query: 615 AAVVLMKLLPPPICFQGPFV 634
+A +M PPP+ FV
Sbjct: 634 SAPPIMAPRPPPMIVPTAFV 653
>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
Length = 1989
Score = 36.6 bits (83), Expect = 0.083
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 68 WKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYLSYVRETKGKLPSYKEKMAQAY 126
WK+ I AEI K +V +L+QR L K+ L LWK L + GK + ++ +++
Sbjct: 1908 WKIAIAAEIVLKGQREVHRLYQRALQKLPLCASLWKDQLLFEASEGGKTDNLRKLVSKCQ 1967
Query: 127 DFAL 130
+ +
Sbjct: 1968 EIGV 1971
>gi|196114970 protein tyrosine phosphatase, non-receptor type 12
isoform 3 [Homo sapiens]
Length = 650
Score = 35.4 bits (80), Expect = 0.19
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 492 ESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASELKALGYKDVSR 551
E N+ +L ++ ++ KE+YE A+ K + LY ++ A G +++
Sbjct: 129 EFNVFNLIQEMRTQRHSAVQTKEQYELVHRAIAQLFEKQLQLYEIHGAQKIADGVNEINT 188
Query: 552 AKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMI---PFQPRHLAPPGLHPVPGG 608
+ + SI P +D KP P T+ + + L PP HPVP
Sbjct: 189 ENMVS---------SIEPEKQDSPPPKP----PRTRSCLVEGDAKEEILQPPEPHPVPPI 235
Query: 609 VFPVPPAA 616
+ P PP+A
Sbjct: 236 LTPSPPSA 243
>gi|196114967 protein tyrosine phosphatase, non-receptor type 12
isoform 2 [Homo sapiens]
Length = 661
Score = 35.4 bits (80), Expect = 0.19
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 492 ESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASELKALGYKDVSR 551
E N+ +L ++ ++ KE+YE A+ K + LY ++ A G +++
Sbjct: 140 EFNVFNLIQEMRTQRHSAVQTKEQYELVHRAIAQLFEKQLQLYEIHGAQKIADGVNEINT 199
Query: 552 AKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMI---PFQPRHLAPPGLHPVPGG 608
+ + SI P +D KP P T+ + + L PP HPVP
Sbjct: 200 ENMVS---------SIEPEKQDSPPPKP----PRTRSCLVEGDAKEEILQPPEPHPVPPI 246
Query: 609 VFPVPPAA 616
+ P PP+A
Sbjct: 247 LTPSPPSA 254
>gi|196114951 protein tyrosine phosphatase, non-receptor type 12
isoform 1 [Homo sapiens]
Length = 780
Score = 35.4 bits (80), Expect = 0.19
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 492 ESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASELKALGYKDVSR 551
E N+ +L ++ ++ KE+YE A+ K + LY ++ A G +++
Sbjct: 259 EFNVFNLIQEMRTQRHSAVQTKEQYELVHRAIAQLFEKQLQLYEIHGAQKIADGVNEINT 318
Query: 552 AKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMI---PFQPRHLAPPGLHPVPGG 608
+ + SI P +D KP P T+ + + L PP HPVP
Sbjct: 319 ENMVS---------SIEPEKQDSPPPKP----PRTRSCLVEGDAKEEILQPPEPHPVPPI 365
Query: 609 VFPVPPAA 616
+ P PP+A
Sbjct: 366 LTPSPPSA 373
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 35.0 bits (79), Expect = 0.24
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 558 IPDPVVAPS---IVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVPGGVFPVPP 614
+P P V I+P K V +KPE P P P + + P L P P P PP
Sbjct: 10834 VPPPAVPEEPKKIIPEKKVPVIKKPEAPPPKE----PEPEKVIEKPKLKPRPPPPPPAPP 10889
Query: 615 -----AAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIITGGAPELAVE 669
+ +K +P + P QV E +E+ K+P ++ +++ PE
Sbjct: 10890 KEDVKEKIFQLKAIPKKKVPEKP--QVPEKVEL-TPLKVPGGEKKVRKLLPERKPE---- 10942
Query: 670 GNGPVESNAVLTKAVKRPNEDSDEDEEK 697
P E + + KRP E+ + E K
Sbjct: 10943 ---PKEEVVLKSVLRKRPEEEEPKVEPK 10967
Score = 30.0 bits (66), Expect = 7.8
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 561 PVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHP-VPGGVFPVPPAAVVL 619
PV P P +V P+ P P+ + +P + APP P V GV +V
Sbjct: 9330 PVPVPKKEPAAPPKVPEVPKKPVPEEKIPVPVAKKKEAPPAKVPEVQKGVVTEEKITIVT 9389
Query: 620 MK-LLPPPICFQGPFVQVDELMEIFRRCKIPNTVEE 654
+ PPP + P +V E R +P EE
Sbjct: 9390 QREESPPPAVPEIPKKKVPE-----ERKPVPRKEEE 9420
>gi|148612835 zinc finger protein 207 isoform c [Homo sapiens]
Length = 494
Score = 34.3 bits (77), Expect = 0.41
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 572 KDEVDRKPEYPKPDTQQMIPFQPRHLAP----------PGLHPVPG------GVFPVPPA 615
K + D EY D+ FQP+ + P PGL PVPG G+ P+ P
Sbjct: 107 KKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPG 166
Query: 616 AVVLMKLLPP 625
LM +PP
Sbjct: 167 VPPLMPGMPP 176
>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
Length = 478
Score = 34.3 bits (77), Expect = 0.41
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 572 KDEVDRKPEYPKPDTQQMIPFQPRHLAP----------PGLHPVPG------GVFPVPPA 615
K + D EY D+ FQP+ + P PGL PVPG G+ P+ P
Sbjct: 107 KKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPG 166
Query: 616 AVVLMKLLPP 625
LM +PP
Sbjct: 167 VPPLMPGMPP 176
>gi|73808090 zinc finger protein 207 isoform b [Homo sapiens]
Length = 463
Score = 34.3 bits (77), Expect = 0.41
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 572 KDEVDRKPEYPKPDTQQMIPFQPRHLAP----------PGLHPVPG------GVFPVPPA 615
K + D EY D+ FQP+ + P PGL PVPG G+ P+ P
Sbjct: 107 KKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPG 166
Query: 616 AVVLMKLLPP 625
LM +PP
Sbjct: 167 VPPLMPGMPP 176
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 33.5 bits (75), Expect = 0.70
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 565 PSIVPVLKDEVDRKPEYPKPDTQQM---IPFQPRHLAP--PGLHP----VPGGVFPVPPA 615
P+++P V + P P P QQ FQP+ L P P HP P G+ P
Sbjct: 306 PALLPTQPPVVPQAPPPPPPPPQQQPIRSLFQPQPLQPLLPVQHPHHPSPPQGMHMPPQL 365
Query: 616 AVVLMKLLPPPICFQGP 632
M + PPP+ Q P
Sbjct: 366 ETPRMMMTPPPVTPQQP 382
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 33.5 bits (75), Expect = 0.70
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 558 IPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVPGGVFPVPPAAV 617
+P +P + P + P P P P + APP P+PG P PP A
Sbjct: 521 VPTGSPSPDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGS--PEPPPAP 578
Query: 618 VLMKLLPPP 626
L LPPP
Sbjct: 579 PLPGDLPPP 587
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 33.1 bits (74), Expect = 0.92
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 558 IPDPVVAPSIVPVLKDEVDRKP-EYPKPDTQQMIPFQPRHLAPPGLHPVPGGVFPVPPAA 616
+P P PS VP L +V P + P P + IP +PP P P P PP+
Sbjct: 292 VPSP---PSDVPSLLSDVPSPPSDVPSPPSD--IPLLSGVPSPPSDVPSPPSDVPSPPSD 346
Query: 617 VVLMKLLPPPI 627
V L+ +P P+
Sbjct: 347 VPLLSGVPSPL 357
>gi|24430141 fibrillin 1 precursor [Homo sapiens]
Length = 2871
Score = 32.7 bits (73), Expect = 1.2
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 14/80 (17%)
Query: 559 PDPVVAPSIVPVLKDE-----------VDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVPG 607
P VAP + P+ E + +PEYP P + P P PPG P P
Sbjct: 368 PGVTVAPEMCPIRATEDFNKLCSVPMVIPGRPEYPPPP---LGPIPPVLPVPPGFPPGPQ 424
Query: 608 GVFPVPPAAVVLMKLLPPPI 627
P PP + PP +
Sbjct: 425 IPVPRPPVEYLYPSREPPRV 444
>gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens]
Length = 931
Score = 32.3 bits (72), Expect = 1.6
Identities = 21/67 (31%), Positives = 27/67 (40%)
Query: 559 PDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVPGGVFPVPPAAVV 618
P P AP PV ++ + + PF P AP H P V P PP+ VV
Sbjct: 564 PAPAPAPLGTPVKQENSFSSCQLSQQPLGPAHPFNPSLAAPATNHIDPCAVAPGPPSVVV 623
Query: 619 LMKLLPP 625
+ L P
Sbjct: 624 KQEALQP 630
>gi|4758216 dishevelled 2 [Homo sapiens]
Length = 736
Score = 32.3 bits (72), Expect = 1.6
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 594 PRHLAPPGLHPV---PGGVFPVPPAAVVLMKLLPPPI 627
P A PGLHP PG P P VV+M PPP+
Sbjct: 656 PNLRAHPGLHPYGPPPGMALPYNPMMVVMMPPPPPPV 692
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 32.3 bits (72), Expect = 1.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 559 PDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVPGGVFPVPPAAVV 618
P P AP+ P +P P P Q +P P +AP P P + P PP A+
Sbjct: 1459 PTPPPAPTPQP--------QPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMP 1510
Query: 619 LMKLLPPP 626
PPP
Sbjct: 1511 SPPPPPPP 1518
>gi|5031763 hairy and enhancer of split 1 [Homo sapiens]
Length = 280
Score = 32.0 bits (71), Expect = 2.0
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 579 PEYPKPDTQQMIPFQPRHLAPPGLHPVPGGVFPVPPAA 616
P P P Q PF P PP L P+PGG P P A
Sbjct: 168 PPPPGPGGPQHAPFAP----PPPLVPIPGGAAPPPGGA 201
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 32.0 bits (71), Expect = 2.0
Identities = 46/196 (23%), Positives = 69/196 (35%), Gaps = 13/196 (6%)
Query: 437 LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 496
LKK + + + S + + NN L E VL + + + E+ A
Sbjct: 624 LKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYN 683
Query: 497 DLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASELKALGYKDVSRAKLAA 556
+L IL + + + + + LL D + + P SA + Y+ A
Sbjct: 684 ELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAREP-SAPSIPTPAYQSSPAGGHAP 742
Query: 557 IIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVPGGVFPVPPAA 616
P P AP +P P P+P + P P + AP P P G PA
Sbjct: 743 TPPTP--APRTMP---------PTKPQPPARPPPPVLPANRAPSATAPSPVGAGTAAPAP 791
Query: 617 VVLMKLLPPPICFQGP 632
PPP QGP
Sbjct: 792 SQTPGSAPPPQA-QGP 806
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,841,235
Number of Sequences: 37866
Number of extensions: 1345370
Number of successful extensions: 5045
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 4886
Number of HSP's gapped (non-prelim): 200
length of query: 717
length of database: 18,247,518
effective HSP length: 110
effective length of query: 607
effective length of database: 14,082,258
effective search space: 8547930606
effective search space used: 8547930606
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.