Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 45505147
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45505147 hypothetical protein LOC64149 [Homo sapiens]
(396 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45505147 hypothetical protein LOC64149 [Homo sapiens] 796 0.0
gi|42476169 Paf1, RNA polymerase II associated factor, homolog [... 35 0.12
gi|148833504 interleukin 16 isoform 2 [Homo sapiens] 32 0.77
gi|10863889 squamous cell carcinoma antigen recognized by T cell... 31 1.7
gi|223941779 COBW domain containing 1 isoform 3 [Homo sapiens] 31 2.2
gi|146231952 COBW domain containing 6 [Homo sapiens] 31 2.2
gi|21618327 forkhead box I1 isoform a [Homo sapiens] 31 2.2
gi|148727351 COBW domain containing 3 [Homo sapiens] 31 2.2
gi|126722884 COBW domain containing 1 isoform 1 [Homo sapiens] 31 2.2
gi|119120938 COBW domain containing 5 [Homo sapiens] 31 2.2
gi|5032013 kinesin family member 20A [Homo sapiens] 30 3.8
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 30 3.8
gi|33469141 COBW domain-containing protein 2 [Homo sapiens] 30 3.8
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 30 3.8
gi|52421790 mitogen-activated protein kinase kinase kinase 9 [Ho... 30 3.8
gi|63082033 hypothetical protein LOC51149 isoform 1 [Homo sapiens] 30 3.8
gi|222144229 APG7 autophagy 7-like isoform c [Homo sapiens] 30 5.0
gi|222144227 APG7 autophagy 7-like isoform b [Homo sapiens] 30 5.0
gi|5453668 APG7 autophagy 7-like isoform a [Homo sapiens] 30 5.0
gi|116174746 sentrin/SUMO-specific protease 7 isoform 1 [Homo sa... 30 5.0
gi|221307575 Rho-type GTPase-activating protein FLJ32810 [Homo s... 29 6.5
gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo... 29 6.5
gi|8923390 coiled-coil-helix-coiled-coil-helix domain containing... 29 6.5
gi|31742536 fidgetin-like 1 [Homo sapiens] 29 6.5
gi|112789543 fidgetin-like 1 [Homo sapiens] 29 6.5
gi|157671915 guanylate binding protein family, member 6 [Homo sa... 29 6.5
gi|24431975 hypothetical protein LOC26148 [Homo sapiens] 29 8.5
>gi|45505147 hypothetical protein LOC64149 [Homo sapiens]
Length = 396
Score = 796 bits (2057), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MLPSLQESMDGDEKELESSEEGGSAEERRLEPPSSSHYCLYSYRGSRLAQQRGDSEDGSP 60
MLPSLQESMDGDEKELESSEEGGSAEERRLEPPSSSHYCLYSYRGSRLAQQRGDSEDGSP
Sbjct: 1 MLPSLQESMDGDEKELESSEEGGSAEERRLEPPSSSHYCLYSYRGSRLAQQRGDSEDGSP 60
Query: 61 SGTNAETPSGDDFSLSLADTNLPSEVEPELRSFIAKRLSRGAVFEGLGNVASVELKIPGY 120
SGTNAETPSGDDFSLSLADTNLPSEVEPELRSFIAKRLSRGAVFEGLGNVASVELKIPGY
Sbjct: 61 SGTNAETPSGDDFSLSLADTNLPSEVEPELRSFIAKRLSRGAVFEGLGNVASVELKIPGY 120
Query: 121 RVGCYYCLFQNEKLLPETVTIDSERNPSEYVVCFLGGSEKGLELFRLELDKYIQGLKNNM 180
RVGCYYCLFQNEKLLPETVTIDSERNPSEYVVCFLGGSEKGLELFRLELDKYIQGLKNNM
Sbjct: 121 RVGCYYCLFQNEKLLPETVTIDSERNPSEYVVCFLGGSEKGLELFRLELDKYIQGLKNNM 180
Query: 181 NCEARGLESHIKSYLSSWFEDVVCPIQRVVLLFQEKLTFLLHAALSYTPVEVKESDEKTK 240
NCEARGLESHIKSYLSSWFEDVVCPIQRVVLLFQEKLTFLLHAALSYTPVEVKESDEKTK
Sbjct: 181 NCEARGLESHIKSYLSSWFEDVVCPIQRVVLLFQEKLTFLLHAALSYTPVEVKESDEKTK 240
Query: 241 RDINRFLSVASLQGLIHEGTMTSLCMAMTEEQHKSVVIDCSSSQPQFCNAGSNRFCEDWM 300
RDINRFLSVASLQGLIHEGTMTSLCMAMTEEQHKSVVIDCSSSQPQFCNAGSNRFCEDWM
Sbjct: 241 RDINRFLSVASLQGLIHEGTMTSLCMAMTEEQHKSVVIDCSSSQPQFCNAGSNRFCEDWM 300
Query: 301 QAFLNGAKGGNPFLFRQVLENFKLKAIQDTNNLKRFIRQAEMNHYALFKCYMFLKNCGSG 360
QAFLNGAKGGNPFLFRQVLENFKLKAIQDTNNLKRFIRQAEMNHYALFKCYMFLKNCGSG
Sbjct: 301 QAFLNGAKGGNPFLFRQVLENFKLKAIQDTNNLKRFIRQAEMNHYALFKCYMFLKNCGSG 360
Query: 361 DILLKIVKVEHEEMPEAKNVIAVLEEFMKEALDQSF 396
DILLKIVKVEHEEMPEAKNVIAVLEEFMKEALDQSF
Sbjct: 361 DILLKIVKVEHEEMPEAKNVIAVLEEFMKEALDQSF 396
>gi|42476169 Paf1, RNA polymerase II associated factor, homolog
[Homo sapiens]
Length = 531
Score = 35.0 bits (79), Expect = 0.12
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 7 ESMDGDEKELESSEEGGSAEERRLEPPSSSHYCLYSYRGSRLAQQRGDSEDGSPSGTNAE 66
E + +E E E E GGS EE+ S + GS ++ GD ++ S + E
Sbjct: 377 EEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDKSGSGE 436
Query: 67 TPSGDDFSLSLAD 79
S +D + + D
Sbjct: 437 DESSEDEARAARD 449
>gi|148833504 interleukin 16 isoform 2 [Homo sapiens]
Length = 1332
Score = 32.3 bits (72), Expect = 0.77
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 6 QESMDGDEKELESSEEGGSAEERRLEPPSSSHYCLYS---YRGSRLAQQRGDSEDGSPSG 62
Q S++G K LESS G E+ E S+ + R S + S GSP
Sbjct: 469 QWSLEG-VKRLESSWHGRPTLEKEREKNSAPPHRRAQKVMIRSSSDSSYMSGSPGGSPGS 527
Query: 63 TNAETPSGDDFSLSLADTNLPSEVEPELRSFIAKRL 98
+AE PS D +S +LP EP + S + RL
Sbjct: 528 GSAEKPS-SDVDISTHSPSLPLAREPVVLSIASSRL 562
>gi|10863889 squamous cell carcinoma antigen recognized by T cells 1
[Homo sapiens]
Length = 800
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 11 GDEKELESSEEGGSAEERR----LEPPSSSHYCLYSY-RGSRLAQQRGDSEDGSPSGTNA 65
G E+ S E GG R E SS+H S S +R +DG + ++
Sbjct: 49 GGERRKRSRERGGERGSGRRGAEAEARSSTHGRERSQAEPSERRVKREKRDDGYEAAASS 108
Query: 66 ETPSGDDFSLSLADTN 81
+T SGD SLS+ +TN
Sbjct: 109 KTSSGDASSLSIEETN 124
>gi|223941779 COBW domain containing 1 isoform 3 [Homo sapiens]
Length = 376
Score = 30.8 bits (68), Expect = 2.2
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 229 PVEVKESDEKTKRDINRFLSVASLQGLIHEGTMTSLCMAMTEEQHKSVVI------DCSS 282
P+E +S+E+ K + + V + G + G T L +TE+ K V + + S+
Sbjct: 24 PIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSA 83
Query: 283 SQPQFCNAGSNRFCEDWMQ 301
+ + E+W++
Sbjct: 84 LEKSLAVSQGGELYEEWLE 102
>gi|146231952 COBW domain containing 6 [Homo sapiens]
Length = 395
Score = 30.8 bits (68), Expect = 2.2
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 229 PVEVKESDEKTKRDINRFLSVASLQGLIHEGTMTSLCMAMTEEQHKSVVI------DCSS 282
P+E +S+E+ K + + V + G + G T L +TE+ K V + + S+
Sbjct: 24 PIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSA 83
Query: 283 SQPQFCNAGSNRFCEDWMQ 301
+ + E+W++
Sbjct: 84 LEKSLAVSQGGELYEEWLE 102
>gi|21618327 forkhead box I1 isoform a [Homo sapiens]
Length = 378
Score = 30.8 bits (68), Expect = 2.2
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 16 LESSEEGG--SAEERRLEPPSSSHYCLYSYRGSRLAQQRGDSEDGSPSGTNAETPSGDD 72
L+ + GG S+ E+R PP S CL S+ S A G S P T +P D
Sbjct: 252 LDGASPGGTTSSPEKRPSPPPSGAPCLNSFLSSMTAYVSGGSPTSHPLVTPGLSPEPSD 310
>gi|148727351 COBW domain containing 3 [Homo sapiens]
Length = 395
Score = 30.8 bits (68), Expect = 2.2
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 229 PVEVKESDEKTKRDINRFLSVASLQGLIHEGTMTSLCMAMTEEQHKSVVI------DCSS 282
P+E +S+E+ K + + V + G + G T L +TE+ K V + + S+
Sbjct: 24 PIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSA 83
Query: 283 SQPQFCNAGSNRFCEDWMQ 301
+ + E+W++
Sbjct: 84 LEKSLAVSQGGELYEEWLE 102
>gi|126722884 COBW domain containing 1 isoform 1 [Homo sapiens]
Length = 395
Score = 30.8 bits (68), Expect = 2.2
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 229 PVEVKESDEKTKRDINRFLSVASLQGLIHEGTMTSLCMAMTEEQHKSVVI------DCSS 282
P+E +S+E+ K + + V + G + G T L +TE+ K V + + S+
Sbjct: 24 PIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSA 83
Query: 283 SQPQFCNAGSNRFCEDWMQ 301
+ + E+W++
Sbjct: 84 LEKSLAVSQGGELYEEWLE 102
>gi|119120938 COBW domain containing 5 [Homo sapiens]
Length = 347
Score = 30.8 bits (68), Expect = 2.2
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 229 PVEVKESDEKTKRDINRFLSVASLQGLIHEGTMTSLCMAMTEEQHKSVVI------DCSS 282
P+E +S+E+ K + + V + G + G T L +TE+ K V + + S+
Sbjct: 24 PIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSA 83
Query: 283 SQPQFCNAGSNRFCEDWMQ 301
+ + E+W++
Sbjct: 84 LEKSLAVSQGGELYEEWLE 102
>gi|5032013 kinesin family member 20A [Homo sapiens]
Length = 890
Score = 30.0 bits (66), Expect = 3.8
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 212 LFQEKLTFLLHAALSYTPVEVKESDEKTKRDINRFLSVASLQGLIHEGTMTSLCMAMTE 270
+++EKL L + S+ E++E DEK + ++ L A Q + H+ + + L + ++
Sbjct: 621 MYEEKLNILKESLTSFYQEEIQERDEKIE-ELEALLQEARQQSVAHQQSGSELALRRSQ 678
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 30.0 bits (66), Expect = 3.8
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 7 ESMDGDEKELESSEEG------GSAEERRLEPPSSSHYCLYSYRGSRLAQQRGDSEDGSP 60
+ D +++ E EE G+ ER L P+SS RG R +R +E+ +
Sbjct: 870 DDSDSEKRRPEEQEEEPQPRKPGTRRERTLGAPASSERSAAGGRGPR-GHKRKLNEEDAA 928
Query: 61 SGTNAETPSGDDFSLSLADTNLPSEVEPELRSFI 94
S ++ E+ + D+ S S AD + +E EL +
Sbjct: 929 SESSRESSNEDEGSSSEAD-EMAKALEAELNDLM 961
>gi|33469141 COBW domain-containing protein 2 [Homo sapiens]
Length = 395
Score = 30.0 bits (66), Expect = 3.8
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 229 PVEVKESDEKTKRDINRFLSVASLQGLIHEGTMTSLCMAMTEEQHKSVVI------DCSS 282
P+E +S+E+ K + + V + G + G T L +TE+ K V + + S+
Sbjct: 24 PMETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSA 83
Query: 283 SQPQFCNAGSNRFCEDWMQ 301
+ + E+W++
Sbjct: 84 LEKSLAVSQGGELYEEWLE 102
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 30.0 bits (66), Expect = 3.8
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 45 GSRLAQQRGDSEDGSPSGTNAETPSG----DDFSLSLADTNLPSEVEP 88
GS A R DGSP+G+ AE G DDF L A ++P
Sbjct: 1272 GSPSAPNRPQQADGSPNGSTAEEGGGFAWDDDFPLMTAKAAFAMALDP 1319
>gi|52421790 mitogen-activated protein kinase kinase kinase 9 [Homo
sapiens]
Length = 1118
Score = 30.0 bits (66), Expect = 3.8
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 12 DEKELESSEEGGSAEERRLEPPSSSHYCLYSYRGSRLAQQRGDSEDG---SPSGTNAET 67
D +E E SE GS E R PS S+ C+ RG G S DG P+ N+ T
Sbjct: 687 DIEEDEDSEGPGSGESRLQHSPSQSYLCIPFPRGE---DGDGPSSDGIHEEPTPVNSAT 742
>gi|63082033 hypothetical protein LOC51149 isoform 1 [Homo sapiens]
Length = 343
Score = 30.0 bits (66), Expect = 3.8
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 2 LPSLQESMDGDEKELESSEEGGSAEERRLEPPSSSHYCLYSYRGSRLAQQRGDSEDGSPS 61
L SL+E++ E+E ++ G+ +++ PS S + Y + S+ + G S
Sbjct: 71 LRSLEETVSASEEENVGHQQAGNVKQQEKSQPSESRWLKYLEKDSQELELEGTGVCFSKQ 130
Query: 62 GTNAETPSGDDFSLSLADTNLPSEVEPELRSFIAKRLSRGAVFEGLGNVA 111
++ G FS L S RS + SRG G VA
Sbjct: 131 PSSKMEEPGPRFSQDLPRKRKWS------RSTVQPPCSRGVQDSGGSEVA 174
>gi|222144229 APG7 autophagy 7-like isoform c [Homo sapiens]
Length = 623
Score = 29.6 bits (65), Expect = 5.0
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 111 ASVELKIPGYRVGCYYCLFQNEKLLPETVTID 142
+S+ IPGY++GCY+C N+ + P T D
Sbjct: 498 SSLFANIPGYKLGCYFC---NDVVAPGDSTRD 526
>gi|222144227 APG7 autophagy 7-like isoform b [Homo sapiens]
Length = 676
Score = 29.6 bits (65), Expect = 5.0
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 111 ASVELKIPGYRVGCYYCLFQNEKLLPETVTID 142
+S+ IPGY++GCY+C N+ + P T D
Sbjct: 537 SSLFANIPGYKLGCYFC---NDVVAPGDSTRD 565
>gi|5453668 APG7 autophagy 7-like isoform a [Homo sapiens]
Length = 703
Score = 29.6 bits (65), Expect = 5.0
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 111 ASVELKIPGYRVGCYYCLFQNEKLLPETVTID 142
+S+ IPGY++GCY+C N+ + P T D
Sbjct: 537 SSLFANIPGYKLGCYFC---NDVVAPGDSTRD 565
>gi|116174746 sentrin/SUMO-specific protease 7 isoform 1 [Homo
sapiens]
Length = 1050
Score = 29.6 bits (65), Expect = 5.0
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 4 SLQESMDGDEKELESSEEGGSAEERRLEPPSSSHYCLYSYRGSRLAQQRGDSEDGSPSGT 63
SL ++ + ++L SS +G + L P S C S RGS+ ++ D+ +
Sbjct: 189 SLSDTDNLQSEQLSSSSDGSLESYQNLNPHKS---CYLSERGSQRSKTVDDNSAKQTAHN 245
Query: 64 NAETPSGDDFSLSLADT 80
+ D SL ++DT
Sbjct: 246 KEKRRKDDGISLLISDT 262
>gi|221307575 Rho-type GTPase-activating protein FLJ32810 [Homo
sapiens]
Length = 874
Score = 29.3 bits (64), Expect = 6.5
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 20/108 (18%)
Query: 155 LGGSEKGLELFRLELDKYIQGLKNNMNCEARGLESHIKSYLSSWFEDVVCPIQRVVLLFQ 214
+G ++ G + F E +KY L+ ++N A+ ESH+ ++ I R F
Sbjct: 124 IGAAKDGKKKFDKESEKYYSILEKHLNLSAKKKESHL--------QEADTQIDREHQNFY 175
Query: 215 EKLTFLLHAALSYTPVEVKESDEKTKRDINRFLSVASLQGLI---HEG 259
E A+L Y +++E EK K + L ++ LQGL HEG
Sbjct: 176 E-------ASLEYV-FKIQEVQEKKKFEFVEPL-LSFLQGLFTFYHEG 214
>gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo
sapiens]
Length = 674
Score = 29.3 bits (64), Expect = 6.5
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 6 QESMDGDEKELESSEEGGSAEERRLE-----PPSSSHYCLYSYR-GSRLAQQRGDSEDGS 59
Q D +E+E E S+ G + +ER E PP+S+ + YR G ++ + D
Sbjct: 392 QPGEDTEEEEDEDSDTGSAEDEREAETSASTPPASAFLKAWVYRPGEDTEEEEDEDVDSE 451
Query: 60 PSGTNAETPSGD 71
++E G+
Sbjct: 452 DKEDDSEAALGE 463
>gi|8923390 coiled-coil-helix-coiled-coil-helix domain containing
3 [Homo sapiens]
Length = 227
Score = 29.3 bits (64), Expect = 6.5
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 22 GGSAEERRLEPPSSSHYCLYSYRGSRLAQQRGD-SEDGSPSGTNAETPSGDDFSLSLADT 80
GG+ RR+ + + + +G RL++ D ++ SPSG+ ++ SG + S++D
Sbjct: 2 GGTTSTRRVTFEADENENITVVKGIRLSENVIDRMKESSPSGSKSQRYSG-AYGASVSDE 60
Query: 81 NLPSEVEPELRSFIAKRLS 99
L V EL AK+ S
Sbjct: 61 ELKRRVAEELALEQAKKES 79
>gi|31742536 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 29.3 bits (64), Expect = 6.5
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 48 LAQQRGDSEDGSPSGTNAE--------TPSGDDFSLSLADTNLPSEVEPELRSFIAKRL 98
L QRGD E S E T S +D L + TN P E++ R + KRL
Sbjct: 505 LLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRL 563
>gi|112789543 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 29.3 bits (64), Expect = 6.5
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 48 LAQQRGDSEDGSPSGTNAE--------TPSGDDFSLSLADTNLPSEVEPELRSFIAKRL 98
L QRGD E S E T S +D L + TN P E++ R + KRL
Sbjct: 505 LLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRL 563
>gi|157671915 guanylate binding protein family, member 6 [Homo
sapiens]
Length = 633
Score = 29.3 bits (64), Expect = 6.5
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 310 GNPFLFRQVLENFKLKAIQDTN---NLKRFIRQAEMNHYALFKCYMFLKNCGSGDILLKI 366
G+P + LEN LK IQ N F R+ + KC++F + D+L I
Sbjct: 191 GHPITEDEYLEN-ALKLIQGNNPRVQTSNFPRECIRRFFPKRKCFVFDRPTNDKDLLANI 249
Query: 367 VKVEHEEM 374
KV +++
Sbjct: 250 EKVSEKQL 257
>gi|24431975 hypothetical protein LOC26148 [Homo sapiens]
Length = 1247
Score = 28.9 bits (63), Expect = 8.5
Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 42/185 (22%)
Query: 2 LPSLQESMDGDEKELESSEEGGSAEERRLEPPSSSHYCLYSYRGS-----------RLAQ 50
+ SL+E++D +K + E +L SS+ CL + +
Sbjct: 483 IDSLEENLDKKKKGKKFPEASDRCLRSQLSDSSSADRCLRNQSSDSSSACLEIKVPKNPS 542
Query: 51 QRGDSEDGSPSGTNAETPSGDDF-SLSLADTNLPS--------EVEPE-----------L 90
+ ++G P GT + D F + +L DT PS + E E L
Sbjct: 543 AKRSKKEGHPGGTTPKGLLPDSFHTETLEDTEKPSVNERPSEKDAEQEGEGGGIITRQTL 602
Query: 91 RSFIAKRLS--RGAVFEGLGNVASVELKIPGYRVGCYYCLFQNEKLLPETVTIDSERNPS 148
++ + K + RG +F + + +PG R+ Y +EK + PS
Sbjct: 603 KNMLDKEVKELRGEIFPSRDPITTAGQPLPGERLEIYVQSKMDEK---------NAHIPS 653
Query: 149 EYVVC 153
E + C
Sbjct: 654 ESIAC 658
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,487,439
Number of Sequences: 37866
Number of extensions: 729885
Number of successful extensions: 2278
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2263
Number of HSP's gapped (non-prelim): 30
length of query: 396
length of database: 18,247,518
effective HSP length: 104
effective length of query: 292
effective length of database: 14,309,454
effective search space: 4178360568
effective search space used: 4178360568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.