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Search of human proteins with 4507127
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo
sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo s... 358 1e-99
gi|169168212 PREDICTED: hypothetical protein LOC100129566 [Homo ... 311 1e-85
gi|169167975 PREDICTED: hypothetical protein LOC100129566 [Homo ... 308 1e-84
gi|169167690 PREDICTED: hypothetical protein LOC100129566 [Homo ... 308 1e-84
gi|7706501 WW domain binding protein 11 [Homo sapiens] 78 3e-15
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 72 2e-13
gi|146134388 YLP motif containing 1 [Homo sapiens] 69 1e-12
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 69 2e-12
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 69 2e-12
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 67 5e-12
gi|160707881 formin 2 [Homo sapiens] 64 5e-11
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 64 5e-11
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 64 5e-11
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens] 63 9e-11
gi|157168329 formin 1 [Homo sapiens] 62 2e-10
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 62 2e-10
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 62 2e-10
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 62 2e-10
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 62 2e-10
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 62 2e-10
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 60 1e-09
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens] 59 1e-09
gi|5803003 diaphanous 2 isoform 156 [Homo sapiens] 59 1e-09
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 59 2e-09
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 59 2e-09
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 58 3e-09
gi|163965366 nascent polypeptide-associated complex alpha subuni... 58 3e-09
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 57 5e-09
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 57 5e-09
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 57 5e-09
>gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo
sapiens]
Length = 159
Score = 358 bits (918), Expect = 1e-99
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP 120
KIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP 120
Query: 121 GMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRPDR 159
GMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRPDR
Sbjct: 121 GMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRPDR 159
>gi|169168212 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 311 bits (798), Expect = 1e-85
Identities = 139/155 (89%), Positives = 143/155 (92%)
Query: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
MPKFYCDYC+TYLTHDSP VRKTHCSGRKHKENVKDYYQKWM+EQAQSLIDKTTAAFQQG
Sbjct: 1 MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG 60
Query: 61 KIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP 120
KIPP PFSAPPP GAMIPPPPSLPGPP PGMMPAPHM GPPMMPMMGPPPPGMMP GPAP
Sbjct: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPPMMPMMGPPPPGMMPGGPAP 120
Query: 121 GMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMT 155
GMRP MGGH PMMPG P++RPPA PMMVPTRP T
Sbjct: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT 155
>gi|169167975 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 308 bits (790), Expect = 1e-84
Identities = 138/155 (89%), Positives = 142/155 (91%)
Query: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
MPKFYCDYC+TYLTHDSP VRKTHCSGRKHKENVKDYYQKWM+EQAQSLIDKTTAAFQQG
Sbjct: 1 MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG 60
Query: 61 KIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP 120
KIPP PFSAPPP GAMIPPPPSLPGPP PGMMPAPHM GP MMPMMGPPPPGMMP GPAP
Sbjct: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPAMMPMMGPPPPGMMPGGPAP 120
Query: 121 GMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMT 155
GMRP MGGH PMMPG P++RPPA PMMVPTRP T
Sbjct: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT 155
>gi|169167690 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 308 bits (790), Expect = 1e-84
Identities = 138/155 (89%), Positives = 142/155 (91%)
Query: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
MPKFYCDYC+TYLTHDSP VRKTHCSGRKHKENVKDYYQKWM+EQAQSLIDKTTAAFQQG
Sbjct: 1 MPKFYCDYCNTYLTHDSPPVRKTHCSGRKHKENVKDYYQKWMKEQAQSLIDKTTAAFQQG 60
Query: 61 KIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP 120
KIPP PFSAPPP GAMIPPPPSLPGPP PGMMPAPHM GP MMPMMGPPPPGMMP GPAP
Sbjct: 61 KIPPAPFSAPPPVGAMIPPPPSLPGPPHPGMMPAPHMRGPAMMPMMGPPPPGMMPGGPAP 120
Query: 121 GMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMT 155
GMRP MGGH PMMPG P++RPPA PMMVPTRP T
Sbjct: 121 GMRPLMGGHRPMMPGSPVIRPPACPMMVPTRPRKT 155
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 78.2 bits (191), Expect = 3e-15
Identities = 54/142 (38%), Positives = 66/142 (46%), Gaps = 26/142 (18%)
Query: 39 QKWMEEQAQSLIDKTTAAFQQGKIPPT----------PFSAPPPAGAMIPPPPSLPGPPR 88
QK +E++ S D T+ A Q + PP P PPP G PP PGPP
Sbjct: 371 QKQHKEESHS--DGTSTASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPT 428
Query: 89 PGMMPAPHMGGPPM-----MPMMGPPPPGMMPVGPAPGMRP--PMGGHMPMMPGPP---- 137
G+ P P G PP MP + P P ++P GP PG P P G + PGPP
Sbjct: 429 -GLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGP 487
Query: 138 --MMRPPARPMMVPTRPGMTRP 157
+ PPA P + P RPGM RP
Sbjct: 488 PPRLPPPAPPGIPPPRPGMMRP 509
Score = 58.5 bits (140), Expect = 2e-09
Identities = 39/97 (40%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 66 PFSAPPPAGAMIPPPPSL--PGPPR---PGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP 120
PF PP + P P L PGPP PG P P G PP P GPPP +P P
Sbjct: 440 PFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPP--RLPPPAPP 497
Query: 121 GMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRP 157
G+ PP P MMRPP P + P PG+ P
Sbjct: 498 GIPPPR---------PGMMRPPLVPPLGPAPPGLFPP 525
Score = 57.0 bits (136), Expect = 7e-09
Identities = 39/87 (44%), Positives = 47/87 (54%), Gaps = 13/87 (14%)
Query: 59 QGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPP-PPGMMPVG 117
+G +P PPP PP PGPP PG+ P P GPP P + PP PPG+ P
Sbjct: 451 RGPLPRLLPPGPPPGR----PPGPPPGPP-PGLPPGPPPRGPP--PRLPPPAPPGIPP-- 501
Query: 118 PAPG-MRPPMGGHMPMMPGPPMMRPPA 143
P PG MRPP+ P+ P PP + PPA
Sbjct: 502 PRPGMMRPPL--VPPLGPAPPGLFPPA 526
Score = 57.0 bits (136), Expect = 7e-09
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 63 PPTPFSAPPPAGAMIP----PPPSLPGPPRPGM-MPAPHMGGPPMMPMMGPPPPGMMPVG 117
PP P PPP P PPP LP P PG+ P P M PP++P +GP PPG+ P
Sbjct: 467 PPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPA 526
Query: 118 PAP 120
P P
Sbjct: 527 PLP 529
Score = 37.7 bits (86), Expect = 0.004
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 64 PTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPP-----MMPMMGPP----PPGMM 114
P P P+ +I P LPG P ++ GPP ++P++G PPG
Sbjct: 140 PLPDMPHAPSNILIQDIP-LPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRK 198
Query: 115 PVGPAPGMRPP 125
P GP PG PP
Sbjct: 199 PPGPPPGPPPP 209
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 72.4 bits (176), Expect = 2e-13
Identities = 42/96 (43%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 62 IPPTPFSAPPPAG---AMIPP-PPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVG 117
+PP AP P G A +PP PP P PP P M P P GPPM P+ PP +P G
Sbjct: 276 VPPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPT--GPPMAPVPPGPPMARVPPG 333
Query: 118 PAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPG 153
P PP P+ PGPPM P P M P PG
Sbjct: 334 PPMARVPPGPPMAPLPPGPPMAPLPPGPPMAPLPPG 369
Score = 67.4 bits (163), Expect = 5e-12
Identities = 43/105 (40%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 62 IPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPG--MMPVGPA 119
+P P P M P PP +P PPRP + P P M P M P PPG M PV P
Sbjct: 238 VPQLPRPPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPW 297
Query: 120 PGMRP----------PMGGHM-PMMPGPPMMRPPARPMMVPTRPG 153
P M P P G M P+ PGPPM R P P M PG
Sbjct: 298 PPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPPG 342
Score = 67.4 bits (163), Expect = 5e-12
Identities = 44/95 (46%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 62 IPPTPFSAPPPAGAMIPPPPSL-PGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP 120
+PP P AP P A +PP + P PP P M P P PPM P+ PP P M PV P
Sbjct: 261 MPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPW--PPMAPV--PPWPPMAPVPTGP 316
Query: 121 GMRP-PMGGHMPMMP-GPPMMRPPARPMMVPTRPG 153
M P P G M +P GPPM R P P M P PG
Sbjct: 317 PMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPPG 351
Score = 61.6 bits (148), Expect = 3e-10
Identities = 37/87 (42%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 62 IPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMG----GPPMMPMMGPPPPGMMPVG 117
+PP P AP P G + P P PGPP + P P M GPPM P+ PP P M P+
Sbjct: 303 VPPWPPMAPVPTGPPMAPVP--PGPPMARVPPGPPMARVPPGPPMAPL--PPGPPMAPLP 358
Query: 118 PAPGMRPPMGGHMPMMPGPPMMRPPAR 144
P P M P+ PGPPM P R
Sbjct: 359 PGPPM-------APLPPGPPMAPLPPR 378
Score = 50.1 bits (118), Expect = 8e-07
Identities = 32/78 (41%), Positives = 39/78 (50%), Gaps = 15/78 (19%)
Query: 62 IPPTPFSAPPPAG---AMIPPPPSL----PGPPRPGMMPAPHMGGPPMMPMMGPPPPGMM 114
+P P AP P G A +PP P + PGPP + P GPPM P+ PP P M
Sbjct: 312 VPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPP-----GPPMAPL--PPGPPMA 364
Query: 115 PVGPAPGMRP-PMGGHMP 131
P+ P P M P P H+P
Sbjct: 365 PLPPGPPMAPLPPRSHVP 382
Score = 44.3 bits (103), Expect = 4e-05
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 61 KIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGP 118
++PP P A P P PP P PP P M P P GPPM P+ PP P M P+ P
Sbjct: 329 RVPPGPPMARVP-----PGPPMAPLPPGPPMAPLP--PGPPMAPL--PPGPPMAPLPP 377
Score = 38.1 bits (87), Expect = 0.003
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 61 KIPPTPFSAP-PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPV 116
++PP P AP PP M P P PGPP + P P M P+ P P G+ PV
Sbjct: 338 RVPPGPPMAPLPPGPPMAPLP---PGPPMAPLPPGPPMA--PLPPRSHVPHTGLAPV 389
Score = 28.1 bits (61), Expect = 3.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 119 APGMRPPMGGHM-PMMPGPPMMRPPARPMMVPTRPGMTRP 157
AP + P + H+ P +P PP++ P P P P RP
Sbjct: 226 APALDPALCVHLVPQLPRPPVLPVPPMPPRPPMVPMPPRP 265
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 69.3 bits (168), Expect = 1e-12
Identities = 55/154 (35%), Positives = 74/154 (48%), Gaps = 32/154 (20%)
Query: 30 HKENVKDYYQKWMEEQA-----QSLIDKTTAAFQQGK--------IPP--TPFSA-PPPA 73
HK+ +++Y ++W Q QS + + +FQ K +PP P+S PPP
Sbjct: 471 HKDQLQEYEKQWKTWQGHMKATQSYLQEKVNSFQNMKNQYMGNMSMPPPFVPYSQMPPPL 530
Query: 74 GAMIPP--PPSLPGPPRPGMMPA---PHMGGPPMMPMMGP---PPPGMMP----VGPAPG 121
M PP PPSLP P P +PA P PP+MP P PPPGM P GP P
Sbjct: 531 PTMPPPVLPPSLPPPVMPPALPATVPPPGMPPPVMPPSLPTSVPPPGMPPSLSSAGPPPV 590
Query: 122 MRPP---MGGHMPMMPGPPMMRPPARPMMVPTRP 152
+ PP G P++P PP + A P ++P P
Sbjct: 591 LPPPSLSSAGPPPVLP-PPSLSSTAPPPVMPLPP 623
Score = 54.3 bits (129), Expect = 4e-08
Identities = 41/129 (31%), Positives = 53/129 (41%), Gaps = 21/129 (16%)
Query: 44 EQAQSLIDKTT-AAFQQGKIPPTPFSAPP--PAGAM---IPPPPSLPGPPRPG------- 90
+Q Q + K Q +PP P PP P G PPPP +P PP P
Sbjct: 62 QQLQQMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQ 121
Query: 91 -----MMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPP--A 143
M+ G P ++PM PP PV P M PP +MP PP PP +
Sbjct: 122 QYKHQMLHHQRDGPPGLVPMELESPPESPPVPPGSYM-PPSQSYMPPPQPPPSYYPPTSS 180
Query: 144 RPMMVPTRP 152
+P + P +P
Sbjct: 181 QPYLPPAQP 189
Score = 45.4 bits (106), Expect = 2e-05
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 62 IPPTPFSA------PPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMP 115
+PP+ SA PPP+ + PPP LP P P P M PP+ PPPG+ P
Sbjct: 578 MPPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVMPLPPL--SSATPPPGIPP 635
Query: 116 VGPAPGMRPPMGGHMPMMPG----PPMMRPPARPMMVPT 150
G G+ PP P+ P + RP ++PT
Sbjct: 636 PGVPQGI-PPQLTAAPVPPASSSQSSQVPEKPRPALLPT 673
Score = 38.5 bits (88), Expect = 0.002
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 62 IPPTPFSAPPPAGAMIPPPPSLPG-PPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP 120
+PP + PPP IPPP G PP+ P P + P P ++P +
Sbjct: 621 LPPLSSATPPPG---IPPPGVPQGIPPQLTAAPVPPASSSQSSQVPEKPRPALLPTPVSF 677
Query: 121 GMRPPMGGHMPMMPGPP 137
G PP H P+ P
Sbjct: 678 GSAPPTTYHPPLQSAGP 694
Score = 36.2 bits (82), Expect = 0.012
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 66 PFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPP 125
P S P P G+ +PP S PP+P P P +P P P+P PP
Sbjct: 147 PESPPVPPGSYMPPSQSYMPPPQPPPSYYPPTSSQPYLP----------PAQPSPSQSPP 196
Query: 126 MGGHMPMMP 134
++ P
Sbjct: 197 SQSYLAPTP 205
Score = 35.4 bits (80), Expect = 0.021
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 67 FSAPPPAGAMIPPPPSL--PGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRP 124
F + P +PP S RPGM P P PPP G P P
Sbjct: 1479 FGSEPQMADHLPPQESRLQNTSSRPGMYPPPGS-------YRPPPPMGKPPGSIVRPSAP 1531
Query: 125 PMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRP 157
P +P+ P + PP P +P P + +P
Sbjct: 1532 PARSSVPVTRPPVPIPPPPPPPPLPPPPPVIKP 1564
Score = 34.7 bits (78), Expect = 0.035
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 26/127 (20%)
Query: 18 PSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMI 77
P ++ + + + + +Y W Q L + + + IP P PPP + I
Sbjct: 1560 PVIKPQTSAVEQERWDEDSFYGLWDTNDEQGLNSEFKS--ETAAIPSAPVLPPPPVHSSI 1617
Query: 78 PPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGM--------RPPMGGH 129
PPP +P MG PP M PPP V G + P G
Sbjct: 1618 PPPGPVP------------MGMPP----MSKPPPVQQTVDYGHGRDISTNKVEQIPYGER 1661
Query: 130 MPMMPGP 136
+ + P P
Sbjct: 1662 ITLRPDP 1668
Score = 32.7 bits (73), Expect = 0.13
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 63 PPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPM-MPMMGPPPPGMMPVGPAPG 121
PP + PPP G PP S+ P P + + PP+ +P PPPP +P P P
Sbjct: 1508 PPGSYRPPPPMGK---PPGSIVRPSAPPARSSVPVTRPPVPIPP--PPPPPPLP-PPPPV 1561
Query: 122 MRP 124
++P
Sbjct: 1562 IKP 1564
Score = 32.0 bits (71), Expect = 0.23
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 18/108 (16%)
Query: 62 IPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPP----------- 110
+PP+ PPP PP+ P P P+P PP + P P
Sbjct: 158 MPPSQSYMPPPQPPPSYYPPTSSQPYLPPAQPSPSQ-SPPSQSYLAPTPSYSSSSSSSQS 216
Query: 111 -----PGMMPVGPAPGMRPPMG-GHMPMMPGPPMMRPPARPMMVPTRP 152
+P A RP G ++ PP PP V P
Sbjct: 217 YLSHSQSYLPSSQASPSRPSQGHSKSQLLAPPPPSAPPGNKTTVQQEP 264
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 68.9 bits (167), Expect = 2e-12
Identities = 42/103 (40%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 60 GKIPPTPFSAPPPAGAMIPP-PPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPP------- 111
G PP P PP + PP PP PGPP PG + P + GPP PPP
Sbjct: 225 GPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPF 284
Query: 112 GMMPVGP-APGMRPPMGGH-MPMMPGPPMMRPPARPMMVPTRP 152
G P+GP PG PP+ G+ P P PP PP P P RP
Sbjct: 285 GQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRP 327
Score = 62.8 bits (151), Expect = 1e-10
Identities = 42/122 (34%), Positives = 49/122 (40%), Gaps = 26/122 (21%)
Query: 60 GKIPPTPFSAPPPAGAMIPPPPSLPG----------------PPRPGMMPAPHMGGPPMM 103
G++ P P + PP G PPP PG PP PG P P GPP
Sbjct: 256 GQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPP---GPPPP 312
Query: 104 PMMGPPPPGMMPVGPAPGMRPPMG-GHMPMMPGPPMMRPPARPMM------VPTRPGMTR 156
PPPPG P P + PP+ P +PGPP PP P + PT GM
Sbjct: 313 QQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPT 372
Query: 157 PD 158
D
Sbjct: 373 SD 374
Score = 52.8 bits (125), Expect = 1e-07
Identities = 41/102 (40%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 55 AAFQQGKIPPTPFSAPPPAGAMIPPP--PSLPGPPRPG--MMPAPHMG--GPPMMPMMGP 108
AAF QG F P G P P P P PP P P P +G GPP P GP
Sbjct: 195 AAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPP--GP 252
Query: 109 PPPGMMPVGPAPGMRPPMGGHMP----MMPGPPMMRPPARPM 146
PPPG V P P PP G P + PG P +PP P+
Sbjct: 253 PPPGQ--VLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPL 292
Score = 47.4 bits (111), Expect = 5e-06
Identities = 38/103 (36%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Query: 58 QQGKIPPTPFSAPPPAGAMIPP-----PPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPG 112
QQG PP P P G + PP PP LPGPP PAPH+ P PPP
Sbjct: 313 QQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVN-----PAFFPPPTN 367
Query: 113 M-MPVGPAPGMRP--PMGGHMPMMPGPPMMRPPARPMMVPTRP 152
MP + G P P G P G PP R M P
Sbjct: 368 SGMPTSDSRGPPPTDPYGRPPPYDRGD--YGPPGREMDTARTP 408
Score = 41.2 bits (95), Expect = 4e-04
Identities = 38/109 (34%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 52 KTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPR-PGMMPAPHMGGPPMMPMMGPPP 110
KTT Q G++ + PP + P G R PG +P P P GPPP
Sbjct: 173 KTT---QSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPG-GPPP 228
Query: 111 PGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRPDR 159
P P G P RPP+G P PGPP PP + + P R DR
Sbjct: 229 P--FPAGQTPP-RPPLGPPGP--PGPPGPPPPGQVLPPPLAGPPNRGDR 272
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 68.9 bits (167), Expect = 2e-12
Identities = 48/115 (41%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 39 QKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMG 98
Q+ M Q + + AA I P PP G PPPP G P PGMM P
Sbjct: 139 QQVMTPQGRGTVAAAAAA-ATASIAGAPTQYPPGRGG--PPPPMGRGAPPPGMMGPPPGM 195
Query: 99 GPPMMPMMGPPPPGMMPVG-PAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRP 152
PPM P MG PP P+G P PGMRPP PP MR P P M P RP
Sbjct: 196 RPPMGPPMGIPPGRGTPMGMPPPGMRPP----------PPGMRGPPPPGMRPPRP 240
Score = 66.6 bits (161), Expect = 8e-12
Identities = 44/101 (43%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 65 TPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRP 124
TP A A S+ G P P GGPP G PPPGMM GP PGMRP
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPT---QYPPGRGGPPPPMGRGAPPPGMM--GPPPGMRP 197
Query: 125 PMGGHMPMMPG--------PPMMRPPARPMMVPTRPGMTRP 157
PMG M + PG PP MRPP M P PGM P
Sbjct: 198 PMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPP 238
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 67.4 bits (163), Expect = 5e-12
Identities = 44/106 (41%), Positives = 54/106 (50%), Gaps = 16/106 (15%)
Query: 62 IPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPA------PHMGGPPMMPMMGPPPPGMMP 115
+PP P + P P+G P PP LP PP PG+ P P G P P + PP PG+ P
Sbjct: 261 LPPMPPTGPAPSGP--PGPPQLP-PPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHP 317
Query: 116 VGPAPGMRPPMGGHMPMMPG----PPMMRPPARPMMVPTRPGMTRP 157
PAPG+ PP G P PG P + PPA P + P PG+ P
Sbjct: 318 --PAPGVHPPTSGVHPPAPGVHPPAPGVHPPA-PGVHPPAPGVHPP 360
Score = 66.2 bits (160), Expect = 1e-11
Identities = 44/103 (42%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 61 KIPPTPFS----APPPAGAMIPPPP--SLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMM 114
K PP P PP +PPPP LP PP P PAP GPP P + PP PG+
Sbjct: 231 KRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAP--SGPPGPPQLPPPAPGVH 288
Query: 115 PVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRP 157
P PAP + PP G P PG + PPA P + P PG+ P
Sbjct: 289 P--PAPVVHPPASGVHPPAPG---VHPPA-PGVHPPAPGVHPP 325
Score = 63.9 bits (154), Expect = 5e-11
Identities = 46/114 (40%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 60 GKIPPTPFSAPPPAGAMIPPP---PSLPG--PPRPGMMPAPHMGGPPMMPMMGPPPPGMM 114
G PP P PP +G P P P PG PP PG+ P P G P P + PP PG+
Sbjct: 286 GVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHP-PTSGVHPPAPGVHPPAPGVH 344
Query: 115 PVGPAPGMRPPMGGHMPMMPG---PPM--MRP------PARPMMVPTRPGMTRP 157
P PAPG+ PP G P PG PP + P PA P + P PG+ P
Sbjct: 345 P--PAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPP 396
Score = 62.4 bits (150), Expect = 2e-10
Identities = 42/113 (37%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 60 GKIPPTPFSAPPPAGAMIPPP---PSLPG--PPRPGMMPAPHMGGPPMMPMMGPPPPGMM 114
G PP P PP G P P P PG PP PG+ P P G P P + P P +
Sbjct: 328 GVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVH 387
Query: 115 PVGPAPGMRPPMGGHMPMMPG----PPMMRP------PARPMMVPTRPGMTRP 157
P APG+ PP G P PG PP + P P P + P+ PG+ P
Sbjct: 388 P--QAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHPP 438
Score = 60.8 bits (146), Expect = 5e-10
Identities = 41/100 (41%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 63 PPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPV-----G 117
PP P PPPA + PP P + PP G+ P P G P P + PP PG+ P
Sbjct: 274 PPGPPQLPPPAPGVHPPAP-VVHPPASGVHP-PAPGVHPPAPGVHPPAPGVHPPTSGVHP 331
Query: 118 PAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRP 157
PAPG+ PP G P PG + PPA P + P PG+ P
Sbjct: 332 PAPGVHPPAPGVHPPAPG---VHPPA-PGVHPPAPGVHPP 367
Score = 58.5 bits (140), Expect = 2e-09
Identities = 36/85 (42%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 78 PPPPSLP-GPPRPGMMPAPHMGG----PPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPM 132
P PPSLP GPP P P M G PP+ + PPPPG +P+ P P P G
Sbjct: 218 PAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGP--- 274
Query: 133 MPGPPMMRPPARPMMVPTRPGMTRP 157
PGPP + PPA P + P P + P
Sbjct: 275 -PGPPQLPPPA-PGVHPPAPVVHPP 297
Score = 57.8 bits (138), Expect = 4e-09
Identities = 35/94 (37%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 60 GKIPPTPFSAPPPAGAMIPPPPSLPG------PPRPGMMPAPHMGGPPMMPMMGPPPPGM 113
G PP P PPP+ + P P + P PG+ P P G P P + P PPG+
Sbjct: 356 GVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHP-PAPGMHPQAPGVHPQPPGV 414
Query: 114 MPVGPA-----PGMRPPMGGHMPMMPGPPMMRPP 142
P P PG+ P G P P PPM+RPP
Sbjct: 415 HPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRPP 448
Score = 55.5 bits (132), Expect = 2e-08
Identities = 43/109 (39%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 60 GKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMP-AP--HMGGP---PMMPMMGPPPPGM 113
G PP P PPA + PP P + PP G+ P AP H P P P + PP PGM
Sbjct: 342 GVHPPAP-GVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGM 400
Query: 114 MPVGPAPGMRPPMGGHMPMMPG----PPMMRPPARPMMVPT-RPGMTRP 157
P APG+ P G P PG PP + P + PT P M RP
Sbjct: 401 HP--QAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRP 447
Score = 37.7 bits (86), Expect = 0.004
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 60 GKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPA 119
G PP P P A + P PP + P PG+ P P P + P PG+ P P
Sbjct: 392 GVHPPAP-GMHPQAPGVHPQPPGVH-PSAPGVHPQP--------PGVHPSNPGVHPPTPM 441
Query: 120 PGM-RPPMGGHMP-MMPGPP 137
P M RPP+ P +P PP
Sbjct: 442 PPMLRPPLPSEGPGNIPPPP 461
Score = 35.4 bits (80), Expect = 0.021
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 105 MMGPPPPGMMPVGPAPGMRPP---MGGHMPMMPGPPMMRPPAR-----PMMVPTRPGMTR 156
M PP P +P GP RPP M G P P P + PP P M PT P +
Sbjct: 214 MEKPPAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSG 273
Query: 157 P 157
P
Sbjct: 274 P 274
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 63.9 bits (154), Expect = 5e-11
Identities = 45/116 (38%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 62 IPPTP------FSAPPPA-GAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG---PPPP 111
IPP P PPP GA IPPPP LPG P P P +G PP P+ G PPPP
Sbjct: 1140 IPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPPP 1199
Query: 112 -----GMMPVGPAPGMRPPMGGHMPMMP-----GPPMMRPPARPMMVPTRPGMTRP 157
G+ P P PGM P P+ P PP + P + P ++P T P
Sbjct: 1200 PLPGAGIPPPPPLPGMGIPPAPAPPLPPPGTGIPPPPLLPVSGPPLLPQVGSSTLP 1255
Score = 62.8 bits (151), Expect = 1e-10
Identities = 45/116 (38%), Positives = 54/116 (46%), Gaps = 21/116 (18%)
Query: 63 PPTPFSAPPPA----GAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG---PPPP---- 111
PP P + PP GA IPPPP LPG P P P +G PP P+ G PPPP
Sbjct: 1111 PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPG 1170
Query: 112 -GMMPVGPAPGM----RPPMGG----HMPMMPGPPMMRPPARP-MMVPTRPGMTRP 157
G+ P P PG+ PP+ G P +PG + PP P M +P P P
Sbjct: 1171 AGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGMGIPPAPAPPLP 1226
Score = 59.3 bits (142), Expect = 1e-09
Identities = 44/115 (38%), Positives = 53/115 (46%), Gaps = 21/115 (18%)
Query: 63 PPTPFSAPPPA----GAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG---PPPP---- 111
PP P + PP GA IPPPP LPG P P P G PP P+ G PPPP
Sbjct: 1034 PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1093
Query: 112 -GMMPVGPAPGM----RPPMGG----HMPMMPGPPMMRPPARP-MMVPTRPGMTR 156
G+ P P PG+ PP+ G P +PG + PP P +P P + R
Sbjct: 1094 AGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPR 1148
Score = 59.3 bits (142), Expect = 1e-09
Identities = 39/98 (39%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 63 PPTPFSAPPPA----GAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG---PPPPGMMP 115
PP P + PP GA IPPPP LPG P P P +G PP P+ G PPPP +
Sbjct: 1067 PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGAGIPPPPPL-- 1124
Query: 116 VGPAPGMRPPMGGHMPMMPGPPMMRPPARPMM-VPTRP 152
P G+ PP P +PG + PP P + +P P
Sbjct: 1125 --PGAGIPPP-----PPLPGAGIPPPPPLPRVGIPPPP 1155
Score = 58.9 bits (141), Expect = 2e-09
Identities = 40/98 (40%), Positives = 47/98 (47%), Gaps = 19/98 (19%)
Query: 62 IPPTPFSAPPPA----GAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG---PPPP--- 111
+PP P + PP GA IPPPP LPG P P P G PP P+ G PPPP
Sbjct: 934 LPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLP 993
Query: 112 --GMMPVGPAP--GMRPPMGGHMPMMPGPPMMRPPARP 145
G+ P P P G+ PP P +PG + PP P
Sbjct: 994 GAGIPPPPPLPGAGIPPP-----PPLPGAGIPPPPPLP 1026
Score = 58.2 bits (139), Expect = 3e-09
Identities = 40/97 (41%), Positives = 46/97 (47%), Gaps = 19/97 (19%)
Query: 63 PPTPFSA----PPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG---PPPP---- 111
PP P + PP GA IPPPP LPG P P P G PP P+ G PPPP
Sbjct: 957 PPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1016
Query: 112 -GMMPVGPAP--GMRPPMGGHMPMMPGPPMMRPPARP 145
G+ P P P G+ PP P +PG + PP P
Sbjct: 1017 AGIPPPPPLPGAGIPPP-----PPLPGAGIPPPPPLP 1048
Score = 58.2 bits (139), Expect = 3e-09
Identities = 40/97 (41%), Positives = 46/97 (47%), Gaps = 19/97 (19%)
Query: 63 PPTPFSAPPPA----GAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG---PPPP---- 111
PP P + PP GA IPPPP LPG P P P G PP P+ G PPPP
Sbjct: 979 PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1038
Query: 112 -GMMPVGPAP--GMRPPMGGHMPMMPGPPMMRPPARP 145
G+ P P P G+ PP P +PG + PP P
Sbjct: 1039 AGIPPPPPLPGAGIPPP-----PPLPGAGIPPPPPLP 1070
Score = 58.2 bits (139), Expect = 3e-09
Identities = 40/97 (41%), Positives = 46/97 (47%), Gaps = 19/97 (19%)
Query: 63 PPTPFSAPPPA----GAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG---PPPP---- 111
PP P + PP GA IPPPP LPG P P P G PP P+ G PPPP
Sbjct: 1001 PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1060
Query: 112 -GMMPVGPAP--GMRPPMGGHMPMMPGPPMMRPPARP 145
G+ P P P G+ PP P +PG + PP P
Sbjct: 1061 AGIPPPPPLPGAGIPPP-----PPLPGAGIPPPPPLP 1092
Score = 58.2 bits (139), Expect = 3e-09
Identities = 37/91 (40%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 63 PPTPFSAPPPA----GAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG---PPPPGMMP 115
PP P + PP GA IPPPP LPG P P P G PP P+ G PPPP +
Sbjct: 1023 PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1082
Query: 116 VGPAPGMRPPMGGHMPMMPGPPMMRPPARPM 146
G P P G P P P + PP P+
Sbjct: 1083 AGIPPPPPLPGAGIPPPPPLPGVGIPPPPPL 1113
Score = 57.8 bits (138), Expect = 4e-09
Identities = 40/97 (41%), Positives = 46/97 (47%), Gaps = 19/97 (19%)
Query: 63 PPTPFSAPPPA----GAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG---PPPP---- 111
PP P + PP GA IPPPP LPG P P P G PP P+ G PPPP
Sbjct: 1078 PPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1137
Query: 112 -GMMPVGPAP--GMRPPMGGHMPMMPGPPMMRPPARP 145
G+ P P P G+ PP P +PG + PP P
Sbjct: 1138 AGIPPPPPLPRVGIPPP-----PPLPGAGIPPPPPLP 1169
Score = 57.0 bits (136), Expect = 7e-09
Identities = 37/94 (39%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 62 IPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG---PPPPGMMPVG- 117
+PP P PP GA IPPPP LPG + P P G PP P+ G PPPP + G
Sbjct: 908 LPPPP---PPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGI 964
Query: 118 ------PAPGMRPPMGGHMPMMPGPPMMRPPARP 145
P G+ PP P +PG + PP P
Sbjct: 965 PLPPPLPGAGIPPP-----PPLPGAGIPPPPPLP 993
Score = 55.8 bits (133), Expect = 1e-08
Identities = 38/93 (40%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 62 IPPTP-------FSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGP--PMMPMMGPPPPG 112
IPP P PP GA IPPPP LPG P P P G P P +P G PPP
Sbjct: 920 IPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPP- 978
Query: 113 MMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARP 145
P P G+ PP P +PG + PP P
Sbjct: 979 --PPLPGAGIPPP-----PPLPGAGIPPPPPLP 1004
Score = 50.8 bits (120), Expect = 5e-07
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 27 GRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGP 86
G + ++ +Q E S + +P T S+ P M+PPPP P
Sbjct: 826 GSQPPHSISTEFQTSHEHSVSSAFKNSCNIPSPPPLPCTESSSSMPGLGMVPPPP----P 881
Query: 87 PRPGM----MPAPHMGGPPMM---PMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMM 139
P PGM +P+ + PP + M+ PPPP + G P P G +P+ P P
Sbjct: 882 PLPGMTVPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAG 941
Query: 140 RPPARPM 146
PP P+
Sbjct: 942 IPPPPPL 948
Score = 50.8 bits (120), Expect = 5e-07
Identities = 40/100 (40%), Positives = 45/100 (45%), Gaps = 20/100 (20%)
Query: 62 IPPTP------FSAPPPA-GAMIPPPPSLPG------PPRPGM--MPAPHMGGPPMMPM- 105
IPP P PPP G IPPPP LPG PP PGM PAP PP+ P
Sbjct: 1173 IPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGMGIPPAP---APPLPPPG 1229
Query: 106 MGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARP 145
G PPP ++PV P + P +G P PP P
Sbjct: 1230 TGIPPPPLLPVS-GPPLLPQVGSSTLPTPQVCGFLPPPLP 1268
Score = 49.7 bits (117), Expect = 1e-06
Identities = 43/127 (33%), Positives = 54/127 (42%), Gaps = 41/127 (32%)
Query: 63 PPTPF----SAPPPAGAMIPPPPSLPG--------------PPRPG--MMPAPHMGGPPM 102
PP P S+ P G + PPPP LPG PP G M+P P PP
Sbjct: 859 PPLPCTESSSSMPGLGMVPPPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPP----PPP 914
Query: 103 MPMMGPPPP------GMMPVGPAP--GMRPPMGGHMPMMPGPPMMRPPARP----MMVPT 150
+P G PPP G++P+ P P G+ PP P +PG + PP P + P
Sbjct: 915 LPGAGIPPPPPLPGAGILPLPPLPGAGIPPP-----PPLPGAAIPPPPPLPGAGIPLPPP 969
Query: 151 RPGMTRP 157
PG P
Sbjct: 970 LPGAGIP 976
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 63.9 bits (154), Expect = 5e-11
Identities = 42/93 (45%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 69 APPPAGAMIPPPPSLPGPPRPGMM------PAPHMGGPPMMPMMGP-PPPGMMPVGPAPG 121
APPP M PPP + PP GMM P P G PP P M P PPPG +P P
Sbjct: 33 APPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIP----PP 88
Query: 122 MRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGM 154
M PP P MP P PP MM P PGM
Sbjct: 89 MGPPHLQRPPFMPPPMSSMPPPPGMMFP--PGM 119
Score = 55.8 bits (133), Expect = 1e-08
Identities = 38/101 (37%), Positives = 42/101 (41%), Gaps = 24/101 (23%)
Query: 64 PTPFSAPPPAGAMIPPPPSLPGPP------RPGMMPAPHMGGPPMMPMMGPP-------- 109
P P PPP M+ PP P PP P M P P GG P P MGPP
Sbjct: 43 PPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIP--PPMGPPHLQRPPFM 100
Query: 110 PPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPT 150
PP M + P PGM P PG P + P P + PT
Sbjct: 101 PPPMSSMPPPPGMMFP--------PGMPPVTAPGTPALPPT 133
Score = 50.1 bits (118), Expect = 8e-07
Identities = 33/79 (41%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 84 PGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMG-----GHMPMMPGPPM 138
P PP P M GPP P+M PPPP M GP P RPP G +MP MP P
Sbjct: 32 PAPP-----PNAVMRGPP--PLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGG 84
Query: 139 MRPPARPMMVPTRPGMTRP 157
+ PP P + P M P
Sbjct: 85 IPPPMGPPHLQRPPFMPPP 103
Score = 45.1 bits (105), Expect = 3e-05
Identities = 31/75 (41%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 60 GKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPA 119
G+ P P P P IPPP P RP MP PPM M PPPPGMM
Sbjct: 68 GRPPFDPNMPPMPPPGGIPPPMGPPHLQRPPFMP------PPMSSM--PPPPGMM---FP 116
Query: 120 PGMRPPMGGHMPMMP 134
PGM P P +P
Sbjct: 117 PGMPPVTAPGTPALP 131
Score = 39.7 bits (91), Expect = 0.001
Identities = 34/106 (32%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 54 TAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGM----MPAPHMGG-PPMMPMMGP 108
T+ Q P T P A ++ P S+ P +P PH PP +P P
Sbjct: 290 TSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTLPPAVPHSVP 349
Query: 109 PPPGMMPVGPAPGMRPPMGGHMPMMPGP-----PMMRPPARPMMVP 149
P +P P P M PP +P MP P P M PP PM+ P
Sbjct: 350 QPTTAIPAFP-PVMVPPFRVPLPGMPIPLPGVLPGMAPPIVPMIHP 394
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 51 DKTTAAFQQGKIPPTPFSAPPPAGAMI-----PPPPSLPGPPRPGMMPAPHMGGPPMMPM 105
D+T ++ P S P P + P P +LP P P +P P P P+
Sbjct: 303 DQTPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTLP-PAVPHSVPQPTTAIPAFPPV 361
Query: 106 MGPPPPGMMPVGPAPGMRPPMGGHMPMMPGP--PMMRP 141
M PP P PGM P+ G +P M P PM+ P
Sbjct: 362 MVPPFR-----VPLPGMPIPLPGVLPGMAPPIVPMIHP 394
Score = 38.5 bits (88), Expect = 0.002
Identities = 29/75 (38%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 84 PGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPP- 142
PG R A GP PPP + GP P MRPP M P PP RPP
Sbjct: 16 PGELRMAQQQALRFRGPA-------PPPNAVMRGPPPLMRPPPPFGMMRGP-PPPPRPPF 67
Query: 143 ARPMMVPTRPGMTRP 157
RP P P M P
Sbjct: 68 GRPPFDPNMPPMPPP 82
Score = 28.1 bits (61), Expect = 3.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 58 QQGKIPPTPFSA-PPPAGAMIP---PPPSLPGPP 87
Q+ P P S+ PPP G M P PP + PG P
Sbjct: 95 QRPPFMPPPMSSMPPPPGMMFPPGMPPVTAPGTP 128
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 63.9 bits (154), Expect = 5e-11
Identities = 42/93 (45%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 69 APPPAGAMIPPPPSLPGPPRPGMM------PAPHMGGPPMMPMMGP-PPPGMMPVGPAPG 121
APPP M PPP + PP GMM P P G PP P M P PPPG +P P
Sbjct: 33 APPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIP----PP 88
Query: 122 MRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGM 154
M PP P MP P PP MM P PGM
Sbjct: 89 MGPPHLQRPPFMPPPMSSMPPPPGMMFP--PGM 119
Score = 55.8 bits (133), Expect = 1e-08
Identities = 38/101 (37%), Positives = 42/101 (41%), Gaps = 24/101 (23%)
Query: 64 PTPFSAPPPAGAMIPPPPSLPGPP------RPGMMPAPHMGGPPMMPMMGPP-------- 109
P P PPP M+ PP P PP P M P P GG P P MGPP
Sbjct: 43 PPPLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIP--PPMGPPHLQRPPFM 100
Query: 110 PPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPT 150
PP M + P PGM P PG P + P P + PT
Sbjct: 101 PPPMSSMPPPPGMMFP--------PGMPPVTAPGTPALPPT 133
Score = 50.1 bits (118), Expect = 8e-07
Identities = 33/79 (41%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 84 PGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMG-----GHMPMMPGPPM 138
P PP P M GPP P+M PPPP M GP P RPP G +MP MP P
Sbjct: 32 PAPP-----PNAVMRGPP--PLMRPPPPFGMMRGPPPPPRPPFGRPPFDPNMPPMPPPGG 84
Query: 139 MRPPARPMMVPTRPGMTRP 157
+ PP P + P M P
Sbjct: 85 IPPPMGPPHLQRPPFMPPP 103
Score = 45.1 bits (105), Expect = 3e-05
Identities = 31/75 (41%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 60 GKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPA 119
G+ P P P P IPPP P RP MP PPM M PPPPGMM
Sbjct: 68 GRPPFDPNMPPMPPPGGIPPPMGPPHLQRPPFMP------PPMSSM--PPPPGMM---FP 116
Query: 120 PGMRPPMGGHMPMMP 134
PGM P P +P
Sbjct: 117 PGMPPVTAPGTPALP 131
Score = 38.5 bits (88), Expect = 0.002
Identities = 29/75 (38%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 84 PGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPP- 142
PG R A GP PPP + GP P MRPP M P PP RPP
Sbjct: 16 PGELRMAQQQALRFRGPA-------PPPNAVMRGPPPLMRPPPPFGMMRGP-PPPPRPPF 67
Query: 143 ARPMMVPTRPGMTRP 157
RP P P M P
Sbjct: 68 GRPPFDPNMPPMPPP 82
Score = 33.5 bits (75), Expect = 0.079
Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 26/119 (21%)
Query: 51 DKTTAAFQQGKIPPTPFSAPPPAGAMI-----PPPPSLPGPPRPGMMPAPHMGGPPMMPM 105
D+T ++ P S P P + P P +LP P P +P P P P+
Sbjct: 303 DQTPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTLP-PAVPHSVPQPTTAIPAFPPV 361
Query: 106 MGPPPPGMMPVGPAPGMRPPMGG--HMPMMPGP-------------PMMRPPARPMMVP 149
M PP P PGM P+ G M ++ P P M PP PM+ P
Sbjct: 362 MVPPFR-----VPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHP 415
Score = 28.1 bits (61), Expect = 3.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 58 QQGKIPPTPFSA-PPPAGAMIP---PPPSLPGPP 87
Q+ P P S+ PPP G M P PP + PG P
Sbjct: 95 QRPPFMPPPMSSMPPPPGMMFPPGMPPVTAPGTP 128
>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
Length = 478
Score = 63.2 bits (152), Expect = 9e-11
Identities = 55/161 (34%), Positives = 70/161 (43%), Gaps = 30/161 (18%)
Query: 21 RKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPT--PFSAPPPAGAMIP 78
+KT S +K +++ D Y + A + QQG IPP P P P +P
Sbjct: 99 QKTQESQKKKQQDDSDEYDD-DDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMP 157
Query: 79 P----------------PPSLPGPPRPGMMPA-----PHMGGPPMMPMMGPPPPGMMPVG 117
P PP +PG P PGMMP P G PP+MP M PPGM P
Sbjct: 158 PGIPPLMPGVPPLMPGMPPVMPGMP-PGMMPMGGMMPPGPGIPPLMPGM---PPGMPPPV 213
Query: 118 PAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPT-RPGMTRP 157
P PG+ P PG + RPPA VP +P +T+P
Sbjct: 214 PRPGIPPMTQAQAVSAPG-ILNRPPAPTATVPAPQPPVTKP 253
Score = 40.8 bits (94), Expect = 5e-04
Identities = 37/107 (34%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 58 QQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVG 117
++ ++P + P P A I PP P GMMP P G P M P PP G
Sbjct: 375 RRAQLPKYQRNLPRPGQAPIGNPPV---GPIGGMMP-PQPGIPQQQGMRPPMPPHGQYGG 430
Query: 118 PAPGMRPPMGGHMPMM-PGPPMMRP----PARPMMVPTRPGMTRPDR 159
GM + G MP GPPM+ P P RP M P M++ R
Sbjct: 431 HHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGR 477
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 62.4 bits (150), Expect = 2e-10
Identities = 40/106 (37%), Positives = 47/106 (44%), Gaps = 24/106 (22%)
Query: 55 AAFQQGKIPPTPFSAPPPA------GAMIPPPPS---------LPGPPRPGMMPAPHMGG 99
A+ QQ +PP P S PPP G++ P PP P PP P +P P G
Sbjct: 638 ASNQQKALPPPPASIPPPPPLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPPPLPPPSSAG 697
Query: 100 PPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARP 145
PP PPPP +P PA PP G P P PP + PP P
Sbjct: 698 PP-----PPPPPPPLPNSPA----PPNPGGPPPAPPPPGLAPPPPP 734
Score = 57.0 bits (136), Expect = 7e-09
Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 63 PPTPFSAPPPAGA---MIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPA 119
PP P PPP+ A PPPP LP P P P+ GGPP PPPPG+ P P
Sbjct: 684 PPPPPPLPPPSSAGPPPPPPPPPLPNSPAP-----PNPGGPP----PAPPPPGLAP-PPP 733
Query: 120 PGMRPPMGGHMPMMPGPPMMRP--PARPM 146
PG+ +G P P + P P +P+
Sbjct: 734 PGLFFGLGSSSSQCPRKPAIEPSCPMKPL 762
Score = 39.3 bits (90), Expect = 0.001
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 87 PRPGMMPAPHMGGPPMMPMMGPPPP---GMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPA 143
P GM PP + PPPP G+ + PAP M P G P +P PP PP
Sbjct: 633 PMEGMASNQQKALPPPPASIPPPPPLPSGLGSLSPAPPMPPVSAG--PPLPPPP---PPP 687
Query: 144 RPMMVPTRPGMTRP 157
P+ P+ G P
Sbjct: 688 PPLPPPSSAGPPPP 701
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 62.0 bits (149), Expect = 2e-10
Identities = 42/105 (40%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 39 QKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMG 98
Q+ M Q + + A I P PP G PPPP P PG+M P
Sbjct: 139 QQVMTPQGRGTVAAAAVA-ATASIAGAPTQYPPGRGT--PPPPVGRATPPPGIMAPPPGM 195
Query: 99 GPPMMPMMGPPPPGMMPVG-PAPGMRPPMGGHMPMMPGPPMMRPP 142
PPM P +G PP P+G P PGMRPP G P PP MRPP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRG--PPPPGMRPP 238
Score = 53.9 bits (128), Expect = 6e-08
Identities = 37/101 (36%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 65 TPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRP 124
TP A A + S+ G P P G PP PPPG+M P PGMRP
Sbjct: 143 TPQGRGTVAAAAVAATASIAGAPT---QYPPGRGTPPPPVGRATPPPGIM--APPPGMRP 197
Query: 125 PMGGHMPMMPG--------PPMMRPPARPMMVPTRPGMTRP 157
PMG + + P PP MRPP + P PGM P
Sbjct: 198 PMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238
Score = 42.0 bits (97), Expect = 2e-04
Identities = 38/111 (34%), Positives = 46/111 (41%), Gaps = 27/111 (24%)
Query: 72 PAGAMIPPPPS--------LPGPPRPGMMP--------------APHMGGPPMMPM-MGP 108
PAG IP P+ + GP + M P A G P P G
Sbjct: 115 PAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGT 174
Query: 109 PPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPAR--PMMVPTRPGMTRP 157
PPP + P PG+ P G P M GPP+ PPAR P+ +P PGM P
Sbjct: 175 PPPPVGRATPPPGIMAPPPGMRPPM-GPPIGLPPARGTPIGMPP-PGMRPP 223
Score = 36.6 bits (83), Expect = 0.009
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 16/61 (26%)
Query: 60 GKIPPT--PFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVG 117
G PP P PP G I PP PP PG + GPPPPGM P
Sbjct: 194 GMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPG--------------IRGPPPPGMRPPR 239
Query: 118 P 118
P
Sbjct: 240 P 240
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 62.0 bits (149), Expect = 2e-10
Identities = 42/105 (40%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 39 QKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMG 98
Q+ M Q + + A I P PP G PPPP P PG+M P
Sbjct: 139 QQVMTPQGRGTVAAAAVA-ATASIAGAPTQYPPGRGT--PPPPVGRATPPPGIMAPPPGM 195
Query: 99 GPPMMPMMGPPPPGMMPVG-PAPGMRPPMGGHMPMMPGPPMMRPP 142
PPM P +G PP P+G P PGMRPP G P PP MRPP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRG--PPPPGMRPP 238
Score = 53.9 bits (128), Expect = 6e-08
Identities = 37/101 (36%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 65 TPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRP 124
TP A A + S+ G P P G PP PPPG+M P PGMRP
Sbjct: 143 TPQGRGTVAAAAVAATASIAGAPT---QYPPGRGTPPPPVGRATPPPGIM--APPPGMRP 197
Query: 125 PMGGHMPMMPG--------PPMMRPPARPMMVPTRPGMTRP 157
PMG + + P PP MRPP + P PGM P
Sbjct: 198 PMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238
Score = 42.0 bits (97), Expect = 2e-04
Identities = 38/111 (34%), Positives = 46/111 (41%), Gaps = 27/111 (24%)
Query: 72 PAGAMIPPPPS--------LPGPPRPGMMP--------------APHMGGPPMMPM-MGP 108
PAG IP P+ + GP + M P A G P P G
Sbjct: 115 PAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGT 174
Query: 109 PPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPAR--PMMVPTRPGMTRP 157
PPP + P PG+ P G P M GPP+ PPAR P+ +P PGM P
Sbjct: 175 PPPPVGRATPPPGIMAPPPGMRPPM-GPPIGLPPARGTPIGMPP-PGMRPP 223
Score = 36.6 bits (83), Expect = 0.009
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 16/61 (26%)
Query: 60 GKIPPT--PFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVG 117
G PP P PP G I PP PP PG + GPPPPGM P
Sbjct: 194 GMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPG--------------IRGPPPPGMRPPR 239
Query: 118 P 118
P
Sbjct: 240 P 240
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 62.0 bits (149), Expect = 2e-10
Identities = 42/105 (40%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 39 QKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMG 98
Q+ M Q + + A I P PP G PPPP P PG+M P
Sbjct: 139 QQVMTPQGRGTVAAAAVA-ATASIAGAPTQYPPGRGT--PPPPVGRATPPPGIMAPPPGM 195
Query: 99 GPPMMPMMGPPPPGMMPVG-PAPGMRPPMGGHMPMMPGPPMMRPP 142
PPM P +G PP P+G P PGMRPP G P PP MRPP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRG--PPPPGMRPP 238
Score = 53.9 bits (128), Expect = 6e-08
Identities = 37/101 (36%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 65 TPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRP 124
TP A A + S+ G P P G PP PPPG+M P PGMRP
Sbjct: 143 TPQGRGTVAAAAVAATASIAGAPT---QYPPGRGTPPPPVGRATPPPGIM--APPPGMRP 197
Query: 125 PMGGHMPMMPG--------PPMMRPPARPMMVPTRPGMTRP 157
PMG + + P PP MRPP + P PGM P
Sbjct: 198 PMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238
Score = 42.0 bits (97), Expect = 2e-04
Identities = 38/111 (34%), Positives = 46/111 (41%), Gaps = 27/111 (24%)
Query: 72 PAGAMIPPPPS--------LPGPPRPGMMP--------------APHMGGPPMMPM-MGP 108
PAG IP P+ + GP + M P A G P P G
Sbjct: 115 PAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGT 174
Query: 109 PPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPAR--PMMVPTRPGMTRP 157
PPP + P PG+ P G P M GPP+ PPAR P+ +P PGM P
Sbjct: 175 PPPPVGRATPPPGIMAPPPGMRPPM-GPPIGLPPARGTPIGMPP-PGMRPP 223
Score = 36.6 bits (83), Expect = 0.009
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 16/61 (26%)
Query: 60 GKIPPT--PFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVG 117
G PP P PP G I PP PP PG + GPPPPGM P
Sbjct: 194 GMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPG--------------IRGPPPPGMRPPR 239
Query: 118 P 118
P
Sbjct: 240 P 240
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 62.0 bits (149), Expect = 2e-10
Identities = 42/105 (40%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 39 QKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMG 98
Q+ M Q + + A I P PP G PPPP P PG+M P
Sbjct: 139 QQVMTPQGRGTVAAAAVA-ATASIAGAPTQYPPGRGT--PPPPVGRATPPPGIMAPPPGM 195
Query: 99 GPPMMPMMGPPPPGMMPVG-PAPGMRPPMGGHMPMMPGPPMMRPP 142
PPM P +G PP P+G P PGMRPP G P PP MRPP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRG--PPPPGMRPP 238
Score = 53.9 bits (128), Expect = 6e-08
Identities = 37/101 (36%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 65 TPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRP 124
TP A A + S+ G P P G PP PPPG+M P PGMRP
Sbjct: 143 TPQGRGTVAAAAVAATASIAGAPT---QYPPGRGTPPPPVGRATPPPGIM--APPPGMRP 197
Query: 125 PMGGHMPMMPG--------PPMMRPPARPMMVPTRPGMTRP 157
PMG + + P PP MRPP + P PGM P
Sbjct: 198 PMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238
Score = 42.0 bits (97), Expect = 2e-04
Identities = 38/111 (34%), Positives = 46/111 (41%), Gaps = 27/111 (24%)
Query: 72 PAGAMIPPPPS--------LPGPPRPGMMP--------------APHMGGPPMMPM-MGP 108
PAG IP P+ + GP + M P A G P P G
Sbjct: 115 PAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGT 174
Query: 109 PPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPAR--PMMVPTRPGMTRP 157
PPP + P PG+ P G P M GPP+ PPAR P+ +P PGM P
Sbjct: 175 PPPPVGRATPPPGIMAPPPGMRPPM-GPPIGLPPARGTPIGMPP-PGMRPP 223
Score = 36.6 bits (83), Expect = 0.009
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 16/61 (26%)
Query: 60 GKIPPT--PFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVG 117
G PP P PP G I PP PP PG + GPPPPGM P
Sbjct: 194 GMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPG--------------IRGPPPPGMRPPR 239
Query: 118 P 118
P
Sbjct: 240 P 240
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 62.0 bits (149), Expect = 2e-10
Identities = 42/105 (40%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 39 QKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMG 98
Q+ M Q + + A I P PP G PPPP P PG+M P
Sbjct: 139 QQVMTPQGRGTVAAAAVA-ATASIAGAPTQYPPGRGT--PPPPVGRATPPPGIMAPPPGM 195
Query: 99 GPPMMPMMGPPPPGMMPVG-PAPGMRPPMGGHMPMMPGPPMMRPP 142
PPM P +G PP P+G P PGMRPP G P PP MRPP
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRG--PPPPGMRPP 238
Score = 53.9 bits (128), Expect = 6e-08
Identities = 37/101 (36%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 65 TPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRP 124
TP A A + S+ G P P G PP PPPG+M P PGMRP
Sbjct: 143 TPQGRGTVAAAAVAATASIAGAPT---QYPPGRGTPPPPVGRATPPPGIM--APPPGMRP 197
Query: 125 PMGGHMPMMPG--------PPMMRPPARPMMVPTRPGMTRP 157
PMG + + P PP MRPP + P PGM P
Sbjct: 198 PMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238
Score = 42.0 bits (97), Expect = 2e-04
Identities = 38/111 (34%), Positives = 46/111 (41%), Gaps = 27/111 (24%)
Query: 72 PAGAMIPPPPS--------LPGPPRPGMMP--------------APHMGGPPMMPM-MGP 108
PAG IP P+ + GP + M P A G P P G
Sbjct: 115 PAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGT 174
Query: 109 PPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPAR--PMMVPTRPGMTRP 157
PPP + P PG+ P G P M GPP+ PPAR P+ +P PGM P
Sbjct: 175 PPPPVGRATPPPGIMAPPPGMRPPM-GPPIGLPPARGTPIGMPP-PGMRPP 223
Score = 36.6 bits (83), Expect = 0.009
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 16/61 (26%)
Query: 60 GKIPPT--PFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVG 117
G PP P PP G I PP PP PG + GPPPPGM P
Sbjct: 194 GMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPG--------------IRGPPPPGMRPPR 239
Query: 118 P 118
P
Sbjct: 240 P 240
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 59.7 bits (143), Expect = 1e-09
Identities = 39/91 (42%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 39 QKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMG 98
Q+ M Q + + AA I P PP G PPPP G P PGMM P
Sbjct: 139 QQVMTPQGRGTVAAAAAA-ATASIAGAPTQYPPGRGG--PPPPMGRGAPPPGMMGPPPGM 195
Query: 99 GPPMMPMMGPPPPGMMPVG-PAPGMRPPMGG 128
PPM P MG PP P+G P PGMRPP G
Sbjct: 196 RPPMGPPMGIPPGRGTPMGMPPPGMRPPPPG 226
Score = 45.4 bits (106), Expect = 2e-05
Identities = 46/147 (31%), Positives = 48/147 (32%), Gaps = 66/147 (44%)
Query: 70 PPPAGAMIP-------------------------PPPSLP-----------GPPRPGMMP 93
PPP I P P P GP + M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 94 ------------------------APHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGH 129
P GGPP G PPPGMM GP PGMRPPMG
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM--GPPPGMRPPMGPP 202
Query: 130 MPMMP--GPPMMRPPARPMMVPTRPGM 154
M + P G PM PP P M P PGM
Sbjct: 203 MGIPPGRGTPMGMPP--PGMRPPPPGM 227
Score = 43.9 bits (102), Expect = 6e-05
Identities = 40/111 (36%), Positives = 45/111 (40%), Gaps = 27/111 (24%)
Query: 72 PAGAMIPPPPS--------LPGPPRPGMMP--------------APHMGGPPMMPM-MGP 108
PAG +P P+ + GP + M P A G P P G
Sbjct: 115 PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGG 174
Query: 109 PPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPAR--PMMVPTRPGMTRP 157
PPP M P PGM P G P M GPPM PP R PM +P PGM P
Sbjct: 175 PPPPMGRGAPPPGMMGPPPGMRPPM-GPPMGIPPGRGTPMGMPP-PGMRPP 223
Score = 37.0 bits (84), Expect = 0.007
Identities = 28/61 (45%), Positives = 28/61 (45%), Gaps = 16/61 (26%)
Query: 63 PPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGM 122
PP PPP M PP GPP M P G P MG PPPGM P P PGM
Sbjct: 184 PPPGMMGPPP--GMRPP----MGPP----MGIPPGRGTP----MGMPPPGMRP--PPPGM 227
Query: 123 R 123
R
Sbjct: 228 R 228
>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
Length = 1096
Score = 59.3 bits (142), Expect = 1e-09
Identities = 44/117 (37%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 28 RKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPP 87
+K E +K+ +E + Q L + IP P +APP G PPPP P PP
Sbjct: 519 QKRDEKIKE-----LEAEIQQLRTQAQVLSSSSGIPGPP-AAPPLPGVGPPPPP--PAPP 570
Query: 88 RPGMMPAPHMGGPPMMPMMG---PPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRP 141
PG P P PP+ MMG PPPP ++ GP P PP+GG +P PG + P
Sbjct: 571 LPGGAPLPPPP-PPLPGMMGIPPPPPPPLLFGGPPP--PPPLGG-VPPPPGISLNLP 623
Score = 53.9 bits (128), Expect = 6e-08
Identities = 34/78 (43%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 63 PPTPFSAPP-PAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPP---GMMPVGP 118
PP P APP P GA +PPPP PP PGMM P PP++ GPPPP G +P P
Sbjct: 562 PPPPPPAPPLPGGAPLPPPP----PPLPGMMGIPPPPPPPLL-FGGPPPPPPLGGVPPPP 616
Query: 119 APGMRPPMGGHMPMMPGP 136
+ P G M P
Sbjct: 617 GISLNLPYGMKQKKMYKP 634
>gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]
Length = 1101
Score = 59.3 bits (142), Expect = 1e-09
Identities = 44/117 (37%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 28 RKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPP 87
+K E +K+ +E + Q L + IP P +APP G PPPP P PP
Sbjct: 519 QKRDEKIKE-----LEAEIQQLRTQAQVLSSSSGIPGPP-AAPPLPGVGPPPPP--PAPP 570
Query: 88 RPGMMPAPHMGGPPMMPMMG---PPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRP 141
PG P P PP+ MMG PPPP ++ GP P PP+GG +P PG + P
Sbjct: 571 LPGGAPLPPPP-PPLPGMMGIPPPPPPPLLFGGPPP--PPPLGG-VPPPPGISLNLP 623
Score = 53.9 bits (128), Expect = 6e-08
Identities = 34/78 (43%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 63 PPTPFSAPP-PAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPP---GMMPVGP 118
PP P APP P GA +PPPP PP PGMM P PP++ GPPPP G +P P
Sbjct: 562 PPPPPPAPPLPGGAPLPPPP----PPLPGMMGIPPPPPPPLL-FGGPPPPPPLGGVPPPP 616
Query: 119 APGMRPPMGGHMPMMPGP 136
+ P G M P
Sbjct: 617 GISLNLPYGMKQKKMYKP 634
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 58.9 bits (141), Expect = 2e-09
Identities = 40/100 (40%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 64 PTPFSAPPPAGAMIPPPPSLPG----PPRPGMMPAPHMGGPPMMPMMG----PPPPGMMP 115
P+P S P G IPPPP LPG PP P +P PP P+ G PPPP +P
Sbjct: 655 PSPSSLP--GGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLP 712
Query: 116 VGPAPGMRPPMGGHMPMMPGPP---MMRPPARPMMVPTRP 152
GP PP G + P PP M PP VP P
Sbjct: 713 GGPGIPPPPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAP 752
Score = 54.7 bits (130), Expect = 3e-08
Identities = 42/116 (36%), Positives = 49/116 (42%), Gaps = 27/116 (23%)
Query: 65 TPFSAPPP--AGAMIPPPPSLP---GPPRPGMMPA-------PHMGGPPMMPMMGPPPPG 112
T S PPP A IPPPP LP G P P +P P + G +P PP PG
Sbjct: 628 TAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPG 687
Query: 113 MMPVGPAP-------GMRPPMGGHMPMMPGPPMMRP----PARPMMVPTRPGMTRP 157
+ P P GM PP P +PG P + P P P + P PGM P
Sbjct: 688 SAGIPPPPPPLPGEAGMPPP----PPPLPGGPGIPPPPPFPGGPGIPPPPPGMGMP 739
Score = 53.1 bits (126), Expect = 1e-07
Identities = 39/88 (44%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 61 KIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP 120
+IPP P P AG + PPPP LPG GM P P PP+ G PPP P G P
Sbjct: 677 RIPPPPPPLPGSAG-IPPPPPPLPG--EAGMPPPP----PPLPGGPGIPPPPPFPGG--P 727
Query: 121 GMRPPMGGHMPMMPGPPM-MRPPARPMM 147
G+ PP G M M P PP PA P++
Sbjct: 728 GIPPPPPG-MGMPPPPPFGFGVPAAPVL 754
Score = 51.2 bits (121), Expect = 4e-07
Identities = 35/82 (42%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 62 IPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGM-MPVGPAP 120
IPP P P AG PPPP LPG PG+ P P G P +P PPPPGM MP P
Sbjct: 691 IPPPPPPLPGEAGMP-PPPPPLPG--GPGIPPPPPFPGGPGIP---PPPPGMGMPPPPPF 744
Query: 121 GMRPPMGGHMPMMPGPPMMRPP 142
G P +P P + P
Sbjct: 745 GFGVPAAPVLPFGLTPKKLYKP 766
Score = 48.1 bits (113), Expect = 3e-06
Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 24/135 (17%)
Query: 39 QKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPP------SLPGPPRPGMM 92
+K M + + I + + +PP P P +G +IPPPP + P PP P
Sbjct: 550 KKEMASLSAAAITVPPSVPSRAPVPPAP-PLPGDSGTIIPPPPAPGDSTTPPPPPPPPPP 608
Query: 93 PAPHMGG-----PPMMP---MMGPPPP--GMMPVGPAPGMRPPMGGHMP-MMPGPPMMRP 141
P P GG PP +P + PPPP G + P P + +G P +PG + P
Sbjct: 609 PPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGGTAIPP 668
Query: 142 PARPMMVPTRPGMTR 156
P P PG R
Sbjct: 669 P------PPLPGSAR 677
Score = 47.4 bits (111), Expect = 5e-06
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 16/137 (11%)
Query: 31 KENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPP--PAGAMIPPPPSLPG--- 85
K++++ + E A+ + A + + + PP P+ A +PP P LPG
Sbjct: 525 KQDLEAEVSQLTGEVAKLTKELEDAKKEMASLSAAAITVPPSVPSRAPVPPAPPLPGDSG 584
Query: 86 -----PPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMR 140
PP PG P PP PPPP +P G P + G + P PP+
Sbjct: 585 TIIPPPPAPGDSTTPPPPPPP------PPPPPPLPGGVCISSPPSLPGGTAISPPPPLSG 638
Query: 141 PPARPMMVPTRPGMTRP 157
P P G+ P
Sbjct: 639 DATIPPPPPLPEGVGIP 655
Score = 44.7 bits (104), Expect = 3e-05
Identities = 31/87 (35%), Positives = 34/87 (39%), Gaps = 25/87 (28%)
Query: 58 QQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVG 117
+ G PP P P P G IPPPP PG P G PP P MG PPP
Sbjct: 701 EAGMPPPPP---PLPGGPGIPPPPPFPGGP----------GIPPPPPGMGMPPP------ 741
Query: 118 PAPGMRPPMGGHMPMMPGPPMMRPPAR 144
PP G +P P P P +
Sbjct: 742 ------PPFGFGVPAAPVLPFGLTPKK 762
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 58.9 bits (141), Expect = 2e-09
Identities = 40/100 (40%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 64 PTPFSAPPPAGAMIPPPPSLPG----PPRPGMMPAPHMGGPPMMPMMG----PPPPGMMP 115
P+P S P G IPPPP LPG PP P +P PP P+ G PPPP +P
Sbjct: 664 PSPSSLP--GGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLP 721
Query: 116 VGPAPGMRPPMGGHMPMMPGPP---MMRPPARPMMVPTRP 152
GP PP G + P PP M PP VP P
Sbjct: 722 GGPGIPPPPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAP 761
Score = 54.7 bits (130), Expect = 3e-08
Identities = 42/116 (36%), Positives = 49/116 (42%), Gaps = 27/116 (23%)
Query: 65 TPFSAPPP--AGAMIPPPPSLP---GPPRPGMMPA-------PHMGGPPMMPMMGPPPPG 112
T S PPP A IPPPP LP G P P +P P + G +P PP PG
Sbjct: 637 TAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPG 696
Query: 113 MMPVGPAP-------GMRPPMGGHMPMMPGPPMMRP----PARPMMVPTRPGMTRP 157
+ P P GM PP P +PG P + P P P + P PGM P
Sbjct: 697 SAGIPPPPPPLPGEAGMPPP----PPPLPGGPGIPPPPPFPGGPGIPPPPPGMGMP 748
Score = 53.1 bits (126), Expect = 1e-07
Identities = 39/88 (44%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 61 KIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP 120
+IPP P P AG + PPPP LPG GM P P PP+ G PPP P G P
Sbjct: 686 RIPPPPPPLPGSAG-IPPPPPPLPG--EAGMPPPP----PPLPGGPGIPPPPPFPGG--P 736
Query: 121 GMRPPMGGHMPMMPGPPM-MRPPARPMM 147
G+ PP G M M P PP PA P++
Sbjct: 737 GIPPPPPG-MGMPPPPPFGFGVPAAPVL 763
Score = 51.2 bits (121), Expect = 4e-07
Identities = 35/82 (42%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 62 IPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGM-MPVGPAP 120
IPP P P AG PPPP LPG PG+ P P G P +P PPPPGM MP P
Sbjct: 700 IPPPPPPLPGEAGMP-PPPPPLPG--GPGIPPPPPFPGGPGIP---PPPPGMGMPPPPPF 753
Query: 121 GMRPPMGGHMPMMPGPPMMRPP 142
G P +P P + P
Sbjct: 754 GFGVPAAPVLPFGLTPKKLYKP 775
Score = 48.1 bits (113), Expect = 3e-06
Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 24/135 (17%)
Query: 39 QKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPP------SLPGPPRPGMM 92
+K M + + I + + +PP P P +G +IPPPP + P PP P
Sbjct: 559 KKEMASLSAAAITVPPSVPSRAPVPPAP-PLPGDSGTIIPPPPAPGDSTTPPPPPPPPPP 617
Query: 93 PAPHMGG-----PPMMP---MMGPPPP--GMMPVGPAPGMRPPMGGHMP-MMPGPPMMRP 141
P P GG PP +P + PPPP G + P P + +G P +PG + P
Sbjct: 618 PPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGGTAIPP 677
Query: 142 PARPMMVPTRPGMTR 156
P P PG R
Sbjct: 678 P------PPLPGSAR 686
Score = 47.4 bits (111), Expect = 5e-06
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 16/137 (11%)
Query: 31 KENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPP--PAGAMIPPPPSLPG--- 85
K++++ + E A+ + A + + + PP P+ A +PP P LPG
Sbjct: 534 KQDLEAEVSQLTGEVAKLTKELEDAKKEMASLSAAAITVPPSVPSRAPVPPAPPLPGDSG 593
Query: 86 -----PPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMR 140
PP PG P PP PPPP +P G P + G + P PP+
Sbjct: 594 TIIPPPPAPGDSTTPPPPPPP------PPPPPPLPGGVCISSPPSLPGGTAISPPPPLSG 647
Query: 141 PPARPMMVPTRPGMTRP 157
P P G+ P
Sbjct: 648 DATIPPPPPLPEGVGIP 664
Score = 44.7 bits (104), Expect = 3e-05
Identities = 31/87 (35%), Positives = 34/87 (39%), Gaps = 25/87 (28%)
Query: 58 QQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVG 117
+ G PP P P P G IPPPP PG P G PP P MG PPP
Sbjct: 710 EAGMPPPPP---PLPGGPGIPPPPPFPGGP----------GIPPPPPGMGMPPP------ 750
Query: 118 PAPGMRPPMGGHMPMMPGPPMMRPPAR 144
PP G +P P P P +
Sbjct: 751 ------PPFGFGVPAAPVLPFGLTPKK 771
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 58.2 bits (139), Expect = 3e-09
Identities = 37/91 (40%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 58 QQGKIPPTPFS-APPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGM--- 113
+ G +PP P APPP PPPP GPP P P P G +P PPPPG
Sbjct: 338 RSGPLPPVPLGIAPPPPTPRGPPPPGRGGPPPP---PPPATGRSGPLP---PPPPGAGGP 391
Query: 114 -MPVGPAPGMRPPMGGHMPMMPGPPMMRPPA 143
MP P P PP G+ P P P PA
Sbjct: 392 PMPPPPPPPPPPPSSGNGPAPPPLPPALVPA 422
Score = 51.6 bits (122), Expect = 3e-07
Identities = 36/99 (36%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 58 QQGKIPPTPFSAPPPAGAMIPPPPSLPGPP-RPGMMPAPHMG-GPPMMPMMGPPPPGM-- 113
+Q +PP P P G +P PP + G R G +P +G PP GPPPPG
Sbjct: 309 RQEPLPPPP--PPSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRGPPPPGRGG 366
Query: 114 --MPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPT 150
P PA G P+ P GPPM PP P P+
Sbjct: 367 PPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPPPS 405
Score = 43.5 bits (101), Expect = 8e-05
Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 63 PPTPFSAPPPAGA----MIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMP-VG 117
PP P PPPA + PPPP GPP P P P PP GP PP + P +
Sbjct: 367 PPPP---PPPATGRSGPLPPPPPGAGGPPMP---PPPPPPPPPPSSGNGPAPPPLPPALV 420
Query: 118 PAPGMRPPMG 127
PA G+ P G
Sbjct: 421 PAGGLAPGGG 430
Score = 41.6 bits (96), Expect = 3e-04
Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 55 AAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMM 114
A + G +PP P A P M PPPP P PP G PAP PP+ PP ++
Sbjct: 374 ATGRSGPLPPPPPGAGGP--PMPPPPPPPPPPPSSGNGPAP----PPL-------PPALV 420
Query: 115 PVGP-APG 121
P G APG
Sbjct: 421 PAGGLAPG 428
Score = 38.5 bits (88), Expect = 0.002
Identities = 31/77 (40%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 78 PPPPSLPGP--PRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPG 135
PPPPS G PRP P +GG GP PP +P+G AP P G P G
Sbjct: 316 PPPPSRGGNQLPRP-----PIVGGNK--GRSGPLPP--VPLGIAPPPPTPRGPPPPGRGG 366
Query: 136 PPMMRPPARPMMVPTRP 152
PP PPA P P
Sbjct: 367 PPPPPPPATGRSGPLPP 383
Score = 26.9 bits (58), Expect = 7.4
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 32 ENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGM 91
E+ ++ ++E+ Q + + +Q PPTP + G +PP P PG + G
Sbjct: 131 EDEAQAFRALVQEKIQKRNQRQSGDRRQLPPPPTPANEERRGG--LPPLPLHPGGDQGGP 188
Query: 92 MPAPHMGGPPMMPMMGPPPPGMMPVG-PAPGMRP 124
P G + + P G PAPG P
Sbjct: 189 PVGPLSLGLATVDIQNPDITSSRYRGLPAPGPSP 222
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 58.2 bits (139), Expect = 3e-09
Identities = 44/112 (39%), Positives = 50/112 (44%), Gaps = 25/112 (22%)
Query: 63 PPTPF---SAPPPAGAMIPP---PPSLPG----PPRPG------MMPAPHMGGPPMMPMM 106
PP+P + PPP GA PP PPSL G PP G + P GGP P
Sbjct: 1248 PPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPK 1307
Query: 107 GPP-PPGMMPVGP--APGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMT 155
G P PP P P +PG PP G P PP + PP+ P PT P T
Sbjct: 1308 GAPTPPAATPPSPKGSPGTPPPKGA-----PTPPAVTPPS-PKGTPTLPATT 1353
Score = 48.1 bits (113), Expect = 3e-06
Identities = 37/106 (34%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 61 KIPPTPFSAPPPAGAMIPPPPSLPGPPRP--GMMPAPHMGGPPMMPMMGPPPPGMMPVGP 118
K PTP +A PP+ P PS G P P P+P G P P PP + P P
Sbjct: 960 KWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSP 1019
Query: 119 --APGMRP-PMGGHMPMMPGPPMMR--PPARPMM--VPTRPGMTRP 157
+P P P G P PP + P A P+ PT P T P
Sbjct: 1020 KGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLP 1065
Score = 47.4 bits (111), Expect = 5e-06
Identities = 30/102 (29%), Positives = 32/102 (31%), Gaps = 8/102 (7%)
Query: 64 PTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPM--------MPMMGPPPPGMMP 115
P+P AP P A P P P P P P P PP P P PP P
Sbjct: 934 PSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATP 993
Query: 116 VGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRP 157
P G P P P P P P G + P
Sbjct: 994 PSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTP 1035
Score = 47.0 bits (110), Expect = 7e-06
Identities = 36/108 (33%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 63 PPTPF---SAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGP------PMMPMMG--PPPP 111
PP+P + P P GA +PP + P P + G+ PH G P P P G PPP
Sbjct: 1087 PPSPKGGPATPSPKGAPMPPAATPPSP-KGGLATPPHKGAPTTPAATPPSPKGGLATPPP 1145
Query: 112 GMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRP--GMTRP 157
P PA P GG + PP P P P P G+ P
Sbjct: 1146 KGAPTTPAATPPSPKGG----LATPPPKGAPTTPAATPPSPKGGLATP 1189
Score = 46.2 bits (108), Expect = 1e-05
Identities = 35/105 (33%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 64 PTPFSA-----------PPPAGAMIPPPPSLPGPPRPGMMPA--PHMGGPPMMPMM--GP 108
PTP +A PPP GA PP + P P +PA P G P P GP
Sbjct: 1310 PTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGP 1369
Query: 109 PPPGMMPVGP-APGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRP 152
PP P P M PP P +P P P P ++P P
Sbjct: 1370 TPPAATPSHKGGPAMTPPSPKRGPAIPSP--KGDPTSPAVIPLSP 1412
Score = 45.4 bits (106), Expect = 2e-05
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 65 TPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRP 124
+P + P P GA P +LP P G P + G P P PP P P P+P P
Sbjct: 1046 SPAATPLPKGAPTTPAATLPSPK--GGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAP 1103
Query: 125 PMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRP 157
P P + PP + PT P T P
Sbjct: 1104 MPPAATPPSPKGGLATPPHKG--APTTPAATPP 1134
Score = 45.4 bits (106), Expect = 2e-05
Identities = 36/109 (33%), Positives = 40/109 (36%), Gaps = 17/109 (15%)
Query: 64 PTPFSAPPPAGAMIPPP------PSLPGPPRP--GMMPAPHMGGPPMMPMMGPPPPGMMP 115
P P AP A +P P PSL G P P P+P G P P PP P
Sbjct: 1051 PLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATP 1110
Query: 116 VGPAPGMRPPMGGHMPMMPG--PP-----MMRPPARPMMVPTRPGMTRP 157
P G+ P P P PP + PP P PT P T P
Sbjct: 1111 PSPKGGLATPPHKGAPTTPAATPPSPKGGLATPP--PKGAPTTPAATPP 1157
Score = 45.1 bits (105), Expect = 3e-05
Identities = 34/104 (32%), Positives = 39/104 (37%), Gaps = 13/104 (12%)
Query: 64 PTPFSAPPPA---GAMIPPPPSLPGP-------PRPGMMPAPHMGGPPMMPMMGPPPPGM 113
PTP +A PP+ G P P P P P+ G+ PH G P P PP P
Sbjct: 1080 PTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGA-PTTPAATPPSPKG 1138
Query: 114 MPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRP 157
P P P P P + PP P PT P T P
Sbjct: 1139 GLATPPPKGAPTTPAATPPSPKGGLATPP--PKGAPTTPAATPP 1180
Score = 44.3 bits (103), Expect = 4e-05
Identities = 35/126 (27%), Positives = 40/126 (31%), Gaps = 31/126 (24%)
Query: 58 QQGKIPPTPFSAP--------PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPM------- 102
++G P P AP P P P +P P P P P PP
Sbjct: 897 KEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPAT 956
Query: 103 -MPMMGPPPPGMMPVGP--APGMRPPMGGHMPMMPGPPMMRPPA--------RPMMVPTR 151
P P PP P P P P G P PP PP+ P PT
Sbjct: 957 PSPKWAPTPPAATPPSPKGGPATPSPKGA-----PTPPAATPPSPKGGPATPSPKGAPTP 1011
Query: 152 PGMTRP 157
P +T P
Sbjct: 1012 PAVTPP 1017
Score = 42.0 bits (97), Expect = 2e-04
Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 20/108 (18%)
Query: 63 PPTPFSAPP-PAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPG 121
P TP + PP P G + PPP P P P GG + PPP P PA
Sbjct: 1126 PTTPAATPPSPKGGLATPPPK-GAPTTPAATPPSPKGG------LATPPPKGAPTTPAAT 1178
Query: 122 MRPPMGG----HMPMMPGPPMMRPPA--------RPMMVPTRPGMTRP 157
P GG P P PP+ P PT P T P
Sbjct: 1179 PPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPP 1226
Score = 42.0 bits (97), Expect = 2e-04
Identities = 33/103 (32%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 63 PPTPFSAPP-PAGAMIPPPPS------LPGPPRP-GMMPAPHMGGPPMMPMMGPPPPGMM 114
P TP + PP P G + P P PP P G + P G P P PP P
Sbjct: 1172 PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGG 1231
Query: 115 PVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRP 157
P+P P P P PP P PT P T P
Sbjct: 1232 LATPSPKGAPTTPAATPPSPKGGPATPP--PKGAPTPPAATPP 1272
Score = 41.2 bits (95), Expect = 4e-04
Identities = 33/104 (31%), Positives = 39/104 (37%), Gaps = 18/104 (17%)
Query: 63 PPTPFSAPP-PAGAMIPPPPS------LPGPPRP-GMMPAPHMGGPPMMPMMGPPPPGMM 114
P TP + PP P G + P P PP P G + P G P P PP P
Sbjct: 1195 PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGG 1254
Query: 115 PVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRPD 158
P P PP G P PP PP+ + T P P+
Sbjct: 1255 PATP-----PPKGA-----PTPPAATPPSLKGGLATPPHKGAPN 1288
Score = 41.2 bits (95), Expect = 4e-04
Identities = 38/125 (30%), Positives = 47/125 (37%), Gaps = 39/125 (31%)
Query: 63 PPTPFSAP---PPAGAMIPPP---------PSLP--------GPPRPGMMPAP------- 95
PP+P +P PP GA PP P+LP GP P P
Sbjct: 1317 PPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATP 1376
Query: 96 -HMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGM 154
H GGP M P P P P P+P P +P+ P + PA P+ TR G
Sbjct: 1377 SHKGGPAMTP----PSPKRGPAIPSPKGDPTSPAVIPLSP----KKAPATPV---TREGA 1425
Query: 155 TRPDR 159
P +
Sbjct: 1426 ATPSK 1430
Score = 40.8 bits (94), Expect = 5e-04
Identities = 35/105 (33%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 63 PPTPFSAP---PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPA 119
PP+P P PP GA PP + PP P P G PP P P PP + P P+
Sbjct: 1294 PPSPKGGPATSPPKGAPTPPAAT---PPSPKGSP----GTPP--PKGAPTPPAVTP--PS 1342
Query: 120 PGMRPPMGGHMPMMPG----PPMMRPPARPMMVPTR---PGMTRP 157
P P + P G P P P P+ P MT P
Sbjct: 1343 PKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPP 1387
Score = 38.5 bits (88), Expect = 0.002
Identities = 35/115 (30%), Positives = 41/115 (35%), Gaps = 19/115 (16%)
Query: 60 GKIPPTPFSAPPPAGAMIPP-----PPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMM 114
G P+P AP P A+ PP P + P P PA P P P P G
Sbjct: 999 GPATPSPKGAPTPP-AVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKG-A 1056
Query: 115 PVGPAPGMRPPMGG----HMPMMPGPPMMRPPA--------RPMMVPTRPGMTRP 157
P PA + P GG + P PP PP+ P P P T P
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPP 1111
Score = 38.1 bits (87), Expect = 0.003
Identities = 33/127 (25%), Positives = 39/127 (30%), Gaps = 23/127 (18%)
Query: 52 KTTAAFQQGKIPPTPFSAPPPA--------GAMIPP-------------PPSLPGPPRPG 90
K + A PP+P AP P+ G +PP P P P P
Sbjct: 847 KDSPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPK 906
Query: 91 MMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPT 150
PA M P P +P P+P P P P P P PT
Sbjct: 907 QAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATP--PSPKGGPATPSPKWAPT 964
Query: 151 RPGMTRP 157
P T P
Sbjct: 965 PPAATPP 971
Score = 35.4 bits (80), Expect = 0.021
Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 15/95 (15%)
Query: 63 PPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGM 122
P T AP P +IPP + P P P P + PP P P PAP
Sbjct: 1587 PSTYKGAPSPKELLIPPAVTSPSPKE-----------APTPPAVTPPSPEKGPATPAPKG 1635
Query: 123 RPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRP 157
P P + + P P V + G T P
Sbjct: 1636 TPT----SPPVTPSSLKDSPTSPASVTCKMGATVP 1666
Score = 33.5 bits (75), Expect = 0.079
Identities = 27/100 (27%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 51 DKTTAAFQQGKIPPTPFSAPPPAGAMIPPP---PSLPG--PPRPGMMPAPHMGGPPMMPM 105
D T A + P ++ P G P P+LP PP P PAP P
Sbjct: 1432 DLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPK 1491
Query: 106 MGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARP 145
P P M P + P +P P R P P
Sbjct: 1492 KAPATPAPMGAPTLPAVIPSSPKEVPATPS--SRRDPIAP 1529
Score = 33.1 bits (74), Expect = 0.10
Identities = 31/116 (26%), Positives = 40/116 (34%), Gaps = 7/116 (6%)
Query: 48 SLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG 107
S + + + +FQ K P +P P P PS P P + P P ++
Sbjct: 834 SFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPK-ETPTPSVVN 892
Query: 108 PPPPGMMPVGPAPGMRP--PMGGHMP----MMPGPPMMRPPARPMMVPTRPGMTRP 157
P P P PAP P M P P P + P PT P T P
Sbjct: 893 LPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPP 948
Score = 32.7 bits (73), Expect = 0.13
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 53 TTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPG 112
TT + ++G PP + AM PP P GP P P P P
Sbjct: 1361 TTPSSKEGPTPPAATPSHKGGPAMTPPSPK-RGPAIPS-------------PKGDPTSPA 1406
Query: 113 MMPVGPAPGMRPPMGGHMPMMPGPPMMRPPA-RPMMVPTRPGMTRP 157
++P+ P P+ P + PPA P+ + P + P
Sbjct: 1407 VIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAP 1452
Score = 32.7 bits (73), Expect = 0.13
Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 63 PPTPFS-APPPAGAMIPPPPSLPGPPRP-GMMPAPHMGGPPMMPMMGPPPPGMMPVGPAP 120
P TP S P A+ PP P P P+ +P PM P P ++P P
Sbjct: 1456 PATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKE 1515
Query: 121 GMRPPMGGHMPMMPGPPMMRPPARPMMVPTR----PGMTRP 157
P P+ P ++ + P P MT P
Sbjct: 1516 VPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVP 1556
Score = 32.7 bits (73), Expect = 0.13
Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 20/118 (16%)
Query: 54 TAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGM 113
TA K P T P A+IPP ++P P + +P P PP +
Sbjct: 1530 TATLLSKKTPATL----APKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAV 1585
Query: 114 MPV----GPAPG---MRPPMGGHMPM-MPGPPMMRPPA--------RPMMVPTRPGMT 155
P P+P + P + P P PP + PP+ P PT P +T
Sbjct: 1586 TPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVT 1643
Score = 28.9 bits (63), Expect = 1.9
Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 68 SAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVG-PAP------ 120
SA A+ P P+LP P P P P P P+ P P
Sbjct: 30 SALSVTAALGQPGPTLPPPCSPAPQQCPLSAANQASPFPSPSTIASTPLEVPFPQSSSGT 89
Query: 121 ----GMRPPMGGHMPMMPGPPMMRPP---ARPMMVPTRPG 153
G P +P + GPP+ A PM+ PT G
Sbjct: 90 ALPLGTAPEAPTFLPNLIGPPISPAALALASPMIAPTLKG 129
Score = 28.1 bits (61), Expect = 3.3
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 72 PAGAMIPPPPSLPGPPRPG----MMPAPHMGGPPMMPMMGPPPPGMMPVGPAP-GMRPPM 126
P G + PP P ++P P P PP +P+ P+P PP
Sbjct: 1758 PKGPLAPPESKASTPLTAAAFEKVLPKPESASVSA----APSPPVSLPLAPSPVPTLPPK 1813
Query: 127 GGHMPMMPGPPMMRPPARPM 146
+P PG ++ P++P+
Sbjct: 1814 QQFLPSSPG-LVLESPSKPL 1832
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 57.4 bits (137), Expect = 5e-09
Identities = 38/92 (41%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 69 APPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG----PPPPGMMPVGPAPGMRP 124
APPP PPPS GPP P P PH GPP P G PPPP P AP P
Sbjct: 276 APPP------PPPSRGGPPPP--PPPPHNSGPPPPPARGRGAPPPPPSRAPTA-APPPPP 326
Query: 125 PMGGHMPMMPGPPMMR----PPARPMMVPTRP 152
P + + P PP PPA P P+ P
Sbjct: 327 PSRPSVAVPPPPPNRMYPPPPPALPSSAPSGP 358
Score = 54.3 bits (129), Expect = 4e-08
Identities = 41/111 (36%), Positives = 47/111 (42%), Gaps = 29/111 (26%)
Query: 59 QGKIPPTPFSAPPPAGAMIPPPPSLPG------------PPRPGMMPAPHMGGPPMMPMM 106
+G PP P AP A PPPPS P PP P +P+ GPP
Sbjct: 307 RGAPPPPPSRAPTAAPP--PPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPP----- 359
Query: 107 GPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPM----MVPTRPG 153
PPPP ++ VGP + PP P PGPP PP P VPT G
Sbjct: 360 -PPPPSVLGVGP---VAPPPPPPPPPPPGPP--PPPGLPSDGDHQVPTTAG 404
Score = 52.8 bits (125), Expect = 1e-07
Identities = 39/103 (37%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 63 PPTPFSAPPP-----AGAMIPPP---PSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGM- 113
PP S PPP GA PPP P+ PP P P+ + PP M PPPP +
Sbjct: 292 PPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALP 351
Query: 114 --MPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGM 154
P GP P P + G P+ P PP PP P P PG+
Sbjct: 352 SSAPSGPPP-PPPSVLGVGPVAPPPP--PPPPPPPGPPPPPGL 391
Score = 49.7 bits (117), Expect = 1e-06
Identities = 35/97 (36%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 58 QQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGP--PPPGMMP 115
+Q PP P PP PPPP GPP P PA G PP P P PP P
Sbjct: 274 RQAPPPPPPSRGGPPPP---PPPPHNSGPPPP---PARGRGAPPPPPSRAPTAAPPPPPP 327
Query: 116 VGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRP 152
P+ + PP M P PP P + P P P
Sbjct: 328 SRPSVAVPPPPPNR--MYPPPPPALPSSAPSGPPPPP 362
Score = 33.1 bits (74), Expect = 0.10
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 100 PPMMPMM-GPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPAR-PMMVPTRPGMTRP 157
PP P GPPPP P P P G P P PP P A P P+RP + P
Sbjct: 278 PPPPPSRGGPPPPPPPPHNSGPPPPPARGRGAP--PPPPSRAPTAAPPPPPPSRPSVAVP 335
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 57.4 bits (137), Expect = 5e-09
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 63 PPTPFSAP--------PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMM 114
PP P AP PP G+ +P PPS PP P ++ PP P M PPPP ++
Sbjct: 141 PPPPGPAPGPPQDISEPPGGSPLPSPPSTAPPPPPLLLE------PPPPPSMAPPPPPVL 194
Query: 115 PVGPAPGMRPPMGGHMPMMPGPPMMRPPARPM--MVPTRPGMTRP 157
+ PP P +P PP PPA P+ + P P + P
Sbjct: 195 -----EALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAP 234
Score = 48.1 bits (113), Expect = 3e-06
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 62 IPPTPFSAPPPAGAMI--PPPPSLPGPPRPGM--MPAPHMGGPPMMPMMGPPPPGMMPVG 117
+P P +APPP ++ PPPPS+ PP P + + PH P + P PP +P
Sbjct: 163 LPSPPSTAPPPPPLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPSI----PTPPDFIPPA 218
Query: 118 PAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTR 151
P P +P P PP PA P V TR
Sbjct: 219 PPLAFLAPPPPPVP-APAPP---APASPHTVGTR 248
Score = 42.7 bits (99), Expect = 1e-04
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 76 MIPPPPSLPGPPRPGMMPAPHMGGP-PMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMP 134
+IPPPP P P P + P G P P P PPPP ++ + PP
Sbjct: 138 LIPPPPPGPAPGPPQDISEPPGGSPLPSPPSTAPPPPPLL-------LEPPP-------- 182
Query: 135 GPPMMRPPARPMMVPTRPGMT 155
PP M PP P++ P T
Sbjct: 183 -PPSMAPPPPPVLEALSPPHT 202
Score = 38.5 bits (88), Expect = 0.002
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 18/79 (22%)
Query: 45 QAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLP--GPPRP----------GMM 92
Q+QS D+ + G PP P PPPA + PP P LP PP P G
Sbjct: 378 QSQSQADE-----RAGTPPPAP-PLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHPPAGFT 431
Query: 93 PAPHMGGPPMMPMMGPPPP 111
P P + P PP P
Sbjct: 432 KTPKSSSPALKPKPNPPSP 450
Score = 35.0 bits (79), Expect = 0.027
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 108 PPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMV--PTRPGMTRP 157
PPPP GP + P GG +P PP PP P+++ P P M P
Sbjct: 140 PPPPPGPAPGPPQDISEPPGG--SPLPSPPSTAPPPPPLLLEPPPPPSMAPP 189
Score = 35.0 bits (79), Expect = 0.027
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 17/72 (23%)
Query: 70 PPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPM--MPMMGPPPPGM--MPVGPAPGMRPP 125
PPPA + PP P LP PP P + PA PP+ PP G P +P ++P
Sbjct: 390 PPPAPPLPPPAPPLP-PPAPPLPPA----APPLPCAQKAAHPPAGFTKTPKSSSPALKP- 443
Query: 126 MGGHMPMMPGPP 137
P PP
Sbjct: 444 -------KPNPP 448
Score = 33.5 bits (75), Expect = 0.079
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 44 EQAQSLIDKTTAAFQQG--KIPPTPFSAPPPAGAMIP---PPPSLPGPPRPGMMPAPHMG 98
++AQ K A ++ ++P P PA + P P P PG + +P +G
Sbjct: 318 QEAQEAPRKEEGATKKAPSRLPLPPSFHIRPASQVYPDRAPEPDCPGELKATAPASPRLG 377
Query: 99 GPPMMP--MMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARP 145
G PPP PAP + PP P P P + A P
Sbjct: 378 QSQSQADERAGTPPPAPPLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHP 426
Score = 32.3 bits (72), Expect = 0.18
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 63 PPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG 107
PP F APP PPP P PP P +PH G + P G
Sbjct: 219 PPLAFLAPP------PPPVPAPAPPAPA---SPHTVGTRLFPPGG 254
Score = 30.0 bits (66), Expect = 0.87
Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 23/76 (30%)
Query: 59 QGKIPPTPFSAPPPAG------------AMIPPPPSL---PGPPRPGMMPAPHMGGPP-- 101
QG P FS+PP +IPPPP P PP P + PP
Sbjct: 956 QGHPLPKSFSSPPSPSNKREEEEEEFNFEVIPPPPEFSNDPEPPAPALQYLGRQSSPPRN 1015
Query: 102 ------MMPMMGPPPP 111
+P GP P
Sbjct: 1016 NYSDLRQLPNAGPGAP 1031
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 57.4 bits (137), Expect = 5e-09
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 63 PPTPFSAP--------PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMM 114
PP P AP PP G+ +P PPS PP P ++ PP P M PPPP ++
Sbjct: 141 PPPPGPAPGPPQDISEPPGGSPLPSPPSTAPPPPPLLLE------PPPPPSMAPPPPPVL 194
Query: 115 PVGPAPGMRPPMGGHMPMMPGPPMMRPPARPM--MVPTRPGMTRP 157
+ PP P +P PP PPA P+ + P P + P
Sbjct: 195 -----EALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAP 234
Score = 48.1 bits (113), Expect = 3e-06
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 62 IPPTPFSAPPPAGAMI--PPPPSLPGPPRPGM--MPAPHMGGPPMMPMMGPPPPGMMPVG 117
+P P +APPP ++ PPPPS+ PP P + + PH P + P PP +P
Sbjct: 163 LPSPPSTAPPPPPLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPSI----PTPPDFIPPA 218
Query: 118 PAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTR 151
P P +P P PP PA P V TR
Sbjct: 219 PPLAFLAPPPPPVP-APAPP---APASPHTVGTR 248
Score = 42.7 bits (99), Expect = 1e-04
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 76 MIPPPPSLPGPPRPGMMPAPHMGGP-PMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMP 134
+IPPPP P P P + P G P P P PPPP ++ + PP
Sbjct: 138 LIPPPPPGPAPGPPQDISEPPGGSPLPSPPSTAPPPPPLL-------LEPPP-------- 182
Query: 135 GPPMMRPPARPMMVPTRPGMT 155
PP M PP P++ P T
Sbjct: 183 -PPSMAPPPPPVLEALSPPHT 202
Score = 38.5 bits (88), Expect = 0.002
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 18/79 (22%)
Query: 45 QAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLP--GPPRP----------GMM 92
Q+QS D+ + G PP P PPPA + PP P LP PP P G
Sbjct: 378 QSQSQADE-----RAGTPPPAP-PLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHPPAGFT 431
Query: 93 PAPHMGGPPMMPMMGPPPP 111
P P + P PP P
Sbjct: 432 KTPKSSSPALKPKPNPPSP 450
Score = 35.0 bits (79), Expect = 0.027
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 108 PPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMV--PTRPGMTRP 157
PPPP GP + P GG +P PP PP P+++ P P M P
Sbjct: 140 PPPPPGPAPGPPQDISEPPGG--SPLPSPPSTAPPPPPLLLEPPPPPSMAPP 189
Score = 35.0 bits (79), Expect = 0.027
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 17/72 (23%)
Query: 70 PPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPM--MPMMGPPPPGM--MPVGPAPGMRPP 125
PPPA + PP P LP PP P + PA PP+ PP G P +P ++P
Sbjct: 390 PPPAPPLPPPAPPLP-PPAPPLPPA----APPLPCAQKAAHPPAGFTKTPKSSSPALKP- 443
Query: 126 MGGHMPMMPGPP 137
P PP
Sbjct: 444 -------KPNPP 448
Score = 33.5 bits (75), Expect = 0.079
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 44 EQAQSLIDKTTAAFQQG--KIPPTPFSAPPPAGAMIP---PPPSLPGPPRPGMMPAPHMG 98
++AQ K A ++ ++P P PA + P P P PG + +P +G
Sbjct: 318 QEAQEAPRKEEGATKKAPSRLPLPPSFHIRPASQVYPDRAPEPDCPGELKATAPASPRLG 377
Query: 99 GPPMMP--MMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARP 145
G PPP PAP + PP P P P + A P
Sbjct: 378 QSQSQADERAGTPPPAPPLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHP 426
Score = 32.3 bits (72), Expect = 0.18
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 63 PPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMG 107
PP F APP PPP P PP P +PH G + P G
Sbjct: 219 PPLAFLAPP------PPPVPAPAPPAPA---SPHTVGTRLFPPGG 254
Score = 30.0 bits (66), Expect = 0.87
Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 23/76 (30%)
Query: 59 QGKIPPTPFSAPPPAG------------AMIPPPPSL---PGPPRPGMMPAPHMGGPP-- 101
QG P FS+PP +IPPPP P PP P + PP
Sbjct: 956 QGHPLPKSFSSPPSPSNKREEEEEEFNFEVIPPPPEFSNDPEPPAPALQYLGRQSSPPRN 1015
Query: 102 ------MMPMMGPPPP 111
+P GP P
Sbjct: 1016 NYSDLRQLPNAGPGAP 1031
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.139 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,242,581
Number of Sequences: 37866
Number of extensions: 1098236
Number of successful extensions: 30703
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 1497
Number of HSP's that attempted gapping in prelim test: 7486
Number of HSP's gapped (non-prelim): 11594
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.