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Search of human proteins with 4506911
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506911 sarcoglycan, alpha isoform 1 precursor [Homo
sapiens]
(387 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506911 sarcoglycan, alpha isoform 1 precursor [Homo sapiens] 797 0.0
gi|208973226 sarcoglycan, alpha isoform 2 precursor [Homo sapiens] 403 e-112
gi|150378454 sarcoglycan, epsilon isoform 1 [Homo sapiens] 318 7e-87
gi|10835047 sarcoglycan, epsilon isoform 2 [Homo sapiens] 318 7e-87
gi|150378535 sarcoglycan, epsilon isoform 3 [Homo sapiens] 303 2e-82
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 36 0.051
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 36 0.051
gi|5729993 protein tyrosine phosphatase, receptor type, E isofor... 33 0.33
gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens] 33 0.33
gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens] 33 0.33
gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens] 33 0.33
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 33 0.57
gi|30520331 layilin [Homo sapiens] 32 0.74
gi|112421134 hypothetical protein LOC23742 [Homo sapiens] 32 1.3
gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo ... 31 1.7
gi|223941923 OTU domain containing 1 [Homo sapiens] 30 2.8
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 30 4.8
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 30 4.8
gi|125988398 leukocyte immunoglobulin-like receptor, subfamily B... 30 4.8
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 30 4.8
gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens] 30 4.8
gi|54792129 discoidin, CUB and LCCL domain containing 2 [Homo sa... 29 6.3
>gi|4506911 sarcoglycan, alpha isoform 1 precursor [Homo sapiens]
Length = 387
Score = 797 bits (2059), Expect = 0.0
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI 60
MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI
Sbjct: 1 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI 60
Query: 61 TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL 120
TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL
Sbjct: 61 TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL 120
Query: 121 VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD 180
VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD
Sbjct: 121 VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD 180
Query: 181 RGGRVPLPIEGRKEGVYIKVGSASPFSTCLKMVASPDSHARCAQGQPPLLSCYDTLAPHF 240
RGGRVPLPIEGRKEGVYIKVGSASPFSTCLKMVASPDSHARCAQGQPPLLSCYDTLAPHF
Sbjct: 181 RGGRVPLPIEGRKEGVYIKVGSASPFSTCLKMVASPDSHARCAQGQPPLLSCYDTLAPHF 240
Query: 241 RVDWCNVTLVDKSVPEPADEVPTPGDGILEHDPFFCPPTEAPDRDFLVDALVTLLVPLLV 300
RVDWCNVTLVDKSVPEPADEVPTPGDGILEHDPFFCPPTEAPDRDFLVDALVTLLVPLLV
Sbjct: 241 RVDWCNVTLVDKSVPEPADEVPTPGDGILEHDPFFCPPTEAPDRDFLVDALVTLLVPLLV 300
Query: 301 ALLLTLLLAYVMCCRREGRLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTL 360
ALLLTLLLAYVMCCRREGRLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTL
Sbjct: 301 ALLLTLLLAYVMCCRREGRLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTL 360
Query: 361 PMFNVHTGERLPPRVDSAQVPLILDQH 387
PMFNVHTGERLPPRVDSAQVPLILDQH
Sbjct: 361 PMFNVHTGERLPPRVDSAQVPLILDQH 387
>gi|208973226 sarcoglycan, alpha isoform 2 precursor [Homo sapiens]
Length = 263
Score = 403 bits (1036), Expect = e-112
Identities = 195/196 (99%), Positives = 196/196 (100%)
Query: 1 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI 60
MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI
Sbjct: 1 MAETLFWTPLLVVLLAGLGDTEAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHI 60
Query: 61 TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL 120
TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL
Sbjct: 61 TYHAHLQGHPDLPRWLRYTQRSPHHPGFLYGSATPEDRGLQVIEVTAYNRDSFDTTRQRL 120
Query: 121 VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD 180
VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD
Sbjct: 121 VLEIGDPEGPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALD 180
Query: 181 RGGRVPLPIEGRKEGV 196
RGGRVPLPIEGRKEG+
Sbjct: 181 RGGRVPLPIEGRKEGL 196
Score = 144 bits (362), Expect = 2e-34
Identities = 71/73 (97%), Positives = 72/73 (98%), Gaps = 1/73 (1%)
Query: 315 RREGRLKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPPR 374
R+EG LKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPPR
Sbjct: 192 RKEG-LKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPPR 250
Query: 375 VDSAQVPLILDQH 387
VDSAQVPLILDQH
Sbjct: 251 VDSAQVPLILDQH 263
>gi|150378454 sarcoglycan, epsilon isoform 1 [Homo sapiens]
Length = 462
Score = 318 bits (814), Expect = 7e-87
Identities = 167/371 (45%), Positives = 234/371 (63%), Gaps = 15/371 (4%)
Query: 28 LHPLVGRVFVHTLDHETFLS------LPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQR 81
++P G +FVH L+ E F P ++ P IT++ +L G+PD P WLRY QR
Sbjct: 50 VYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDP---ITFNTNLMGYPDRPGWLRYIQR 106
Query: 82 SPHHPGFLYGSATPEDRGLQ-VIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLV 140
+P+ G LYGS T E+ G +IE+TAYNR +F+T R L++ I E LPYQAEF +
Sbjct: 107 TPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFI 166
Query: 141 RSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKV 200
++ + EE+L S FL A+ +W+P L +N+TSALDRGGRVPLPI KEGVY+ V
Sbjct: 167 KNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMV 226
Query: 201 GSASPFSTCLKMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTLVDKSVPEPADE 260
G+ PFS+CL+ V +P + RC+Q P+++C F +DWC ++LVDK+ +
Sbjct: 227 GADVPFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQ 286
Query: 261 VPTPGDGILEHDPFFCPPTEA-PDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCRREGR 319
G+GIL + PP+++ RD+ D L+TL VP VAL+L L+LAY+MCCRREG
Sbjct: 287 EVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGV 346
Query: 320 LKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPP----RV 375
KR++ T DIQ+VHH I +T+ELR M+ +RE+ PLSTLP+F+ TGE +PP
Sbjct: 347 EKRNMQTPDIQLVHHSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNY 406
Query: 376 DSAQVPLILDQ 386
DS +PL+ Q
Sbjct: 407 DSTNMPLMQTQ 417
>gi|10835047 sarcoglycan, epsilon isoform 2 [Homo sapiens]
Length = 437
Score = 318 bits (814), Expect = 7e-87
Identities = 167/371 (45%), Positives = 234/371 (63%), Gaps = 15/371 (4%)
Query: 28 LHPLVGRVFVHTLDHETFLS------LPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQR 81
++P G +FVH L+ E F P ++ P IT++ +L G+PD P WLRY QR
Sbjct: 50 VYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDP---ITFNTNLMGYPDRPGWLRYIQR 106
Query: 82 SPHHPGFLYGSATPEDRGLQ-VIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLV 140
+P+ G LYGS T E+ G +IE+TAYNR +F+T R L++ I E LPYQAEF +
Sbjct: 107 TPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFI 166
Query: 141 RSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKV 200
++ + EE+L S FL A+ +W+P L +N+TSALDRGGRVPLPI KEGVY+ V
Sbjct: 167 KNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMV 226
Query: 201 GSASPFSTCLKMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTLVDKSVPEPADE 260
G+ PFS+CL+ V +P + RC+Q P+++C F +DWC ++LVDK+ +
Sbjct: 227 GADVPFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQ 286
Query: 261 VPTPGDGILEHDPFFCPPTEA-PDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCRREGR 319
G+GIL + PP+++ RD+ D L+TL VP VAL+L L+LAY+MCCRREG
Sbjct: 287 EVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGV 346
Query: 320 LKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPP----RV 375
KR++ T DIQ+VHH I +T+ELR M+ +RE+ PLSTLP+F+ TGE +PP
Sbjct: 347 EKRNMQTPDIQLVHHSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNY 406
Query: 376 DSAQVPLILDQ 386
DS +PL+ Q
Sbjct: 407 DSTNMPLMQTQ 417
>gi|150378535 sarcoglycan, epsilon isoform 3 [Homo sapiens]
Length = 451
Score = 303 bits (775), Expect = 2e-82
Identities = 163/371 (43%), Positives = 228/371 (61%), Gaps = 24/371 (6%)
Query: 28 LHPLVGRVFVHTLDHETFLS------LPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQR 81
++P G +FVH L+ E F P ++ P IT++ +L G+PD P WLRY QR
Sbjct: 50 VYPSAGVLFVHVLEREYFKGEFPPYPKPGEISNDP---ITFNTNLMGYPDRPGWLRYIQR 106
Query: 82 SPHHPGFLYGSATPEDRGLQ-VIEVTAYNRDSFDTTRQRLVLEIGDPEGPLLPYQAEFLV 140
+P+ G LYGS T E+ G +IE+TAYNR +F+T R L++ I E LPYQAEF +
Sbjct: 107 TPYSDGVLYGSPTAENVGKPTIIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFI 166
Query: 141 RSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKV 200
++ + EE+L S FL A+ +W+P L +N+TSALDRGGRVPLPI KEGVY+ V
Sbjct: 167 KNMNVEEMLASEVLGDFLGAVKNVWQPERLNAINITSALDRGGRVPLPINDLKEGVYVMV 226
Query: 201 GSASPFSTCLKMVASPDSHARCAQGQPPLLSCYDTLAPHFRVDWCNVTLVDKSVPEPADE 260
G+ PFS+CL+ V +P + RC+Q P+++C F +DWC ++LVDK+ +
Sbjct: 227 GADVPFSSCLREVENPQNQLRCSQEMEPVITCDKKFRTQFYIDWCKISLVDKTKQVSTYQ 286
Query: 261 VPTPGDGILEHDPFFCPPTEA-PDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCRREGR 319
G+GIL + PP+++ RD+ D L+TL VP VAL+L L+LAY+MCCRREG
Sbjct: 287 EVIRGEGILPDGGEYKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREG- 345
Query: 320 LKRDLATSDIQMVHHCTIHGNTEELRQMAASREVPRPLSTLPMFNVHTGERLPP----RV 375
IQ+VHH I +T+ELR M+ +RE+ PLSTLP+F+ TGE +PP
Sbjct: 346 --------VIQLVHHSAIQKSTKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNY 397
Query: 376 DSAQVPLILDQ 386
DS +PL+ Q
Sbjct: 398 DSTNMPLMQTQ 408
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 36.2 bits (82), Expect = 0.051
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 20/172 (11%)
Query: 103 IEVTAYNRDSFDTTRQRLVLEIGDPEGPL--LPYQAEFLV--------RSHDAEEVLPST 152
+ VT + + + T LV+ G + + LP E LV ++ + +LPS
Sbjct: 2425 LRVTLWGQRLYLVTDFELVVSFGGRKNAVISLPSMYEGLVSGLCGNYDKNRKNDMMLPSG 2484
Query: 153 PASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCLKM 212
++ L+ G WE + AL R R +P E +G + + + S C
Sbjct: 2485 ALTQNLNTFGNSWE------VKTEDALLRFPRA-IPAEEEGQGAELGLRTGLQVSECSPE 2537
Query: 213 VASPDSHARC---AQGQPPLLSCYDTLAPHFRVDWCNVTLVDKSVPEPADEV 261
+ +S C A Q P +C+ T+AP + C + L P +E+
Sbjct: 2538 QLASNSTQACRVLADPQGPFAACHQTVAPEPFQEHCVLDLCSAQDPREQEEL 2589
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 36.2 bits (82), Expect = 0.051
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 20/172 (11%)
Query: 103 IEVTAYNRDSFDTTRQRLVLEIGDPEGPL--LPYQAEFLV--------RSHDAEEVLPST 152
+ VT + + + T LV+ G + + LP E LV ++ + +LPS
Sbjct: 2425 LRVTLWGQRLYLVTDFELVVSFGGRKNAVISLPSMYEGLVSGLCGNYDKNRKNDMMLPSG 2484
Query: 153 PASRFLSALGGLWEPGELQLLNVTSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCLKM 212
++ L+ G WE + AL R R +P E +G + + + S C
Sbjct: 2485 ALTQNLNTFGNSWE------VKTEDALLRFPRA-IPAEEEGQGAELGLRTGLQVSECSPE 2537
Query: 213 VASPDSHARC---AQGQPPLLSCYDTLAPHFRVDWCNVTLVDKSVPEPADEV 261
+ +S C A Q P +C+ T+AP + C + L P +E+
Sbjct: 2538 QLASNSTQACRVLADPQGPFAACHQTVAPEPFQEHCVLDLCSAQDPREQEEL 2589
>gi|5729993 protein tyrosine phosphatase, receptor type, E isoform 1
precursor [Homo sapiens]
Length = 700
Score = 33.5 bits (75), Expect = 0.33
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 282 PDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCRREGRLKRDLATSDIQMVHHCTIHGNT 341
PD L LL+PLL+ LL+ LL AY R++ K ++TSD +M + I
Sbjct: 39 PDPGASQPLLAWLLLPLLLLLLVLLLAAYFFRFRKQ--RKAVVSTSDKKMPN--GILEEQ 94
Query: 342 EELRQMAASREVPRPLSTLPMFNVHTGERLPPRVDSA 378
E+ R M SR P P+ H E + R+ SA
Sbjct: 95 EQQRVMLLSRSPSGPKKYFPIPVEHLEEEI--RIRSA 129
>gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]
Length = 1805
Score = 33.5 bits (75), Expect = 0.33
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 259 DEVPTPGDGILEHDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCR 315
D P P +L H CPP + + L+ LL+PLL ALLL L Y CC+
Sbjct: 689 DGAPGPNSTVLVHKKKDCPPGSF----WWLIPLLLLLLPLL-ALLLLLCWKYCACCK 740
>gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]
Length = 1822
Score = 33.5 bits (75), Expect = 0.33
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 259 DEVPTPGDGILEHDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCR 315
D P P +L H CPP + + L+ LL+PLL ALLL L Y CC+
Sbjct: 689 DGAPGPNSTVLVHKKKDCPPGSF----WWLIPLLLLLLPLL-ALLLLLCWKYCACCK 740
>gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens]
Length = 1752
Score = 33.5 bits (75), Expect = 0.33
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 259 DEVPTPGDGILEHDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVMCCR 315
D P P +L H CPP + + L+ LL+PLL ALLL L Y CC+
Sbjct: 689 DGAPGPNSTVLVHKKKDCPPGSF----WWLIPLLLLLLPLL-ALLLLLCWKYCACCK 740
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 32.7 bits (73), Expect = 0.57
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 188 PIEGRKEGVYIKVGSASPFSTCLKMVASPDSHAR----------CAQGQPPLLSCYDTLA 237
P+ + +GS+ S+ + AS D R C G PPLL + + +
Sbjct: 841 PVVSSANSYVMSMGSSGMLSSHSRTTASGDERGRELGDTPLASSCPWGPPPLLKVFSSDS 900
Query: 238 PHFRVDWCNVTLVDKSVPEPADEVPTPGDGI 268
P W + L+D PE PGDG+
Sbjct: 901 PRDPAPWLALLLLD--APELG-----PGDGV 924
>gi|30520331 layilin [Homo sapiens]
Length = 374
Score = 32.3 bits (72), Expect = 0.74
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 296 VPLLVALLLTLLLAYVMCCRREGRLKRDLATSDIQMVHHCTIHGNTEEL-------RQMA 348
+PLL+ L++T ++ +V CR+ R + D +T + GN+ +L +Q
Sbjct: 233 IPLLLLLVVTTVVCWVWICRKRKREQPDPSTKKQHTIWPSPHQGNSPDLEVYNVIRKQSE 292
Query: 349 ASREVPRPLSTLPMFNVHTGERLP 372
A RP F V +GE P
Sbjct: 293 ADLAETRPDLKNISFRVCSGEATP 316
>gi|112421134 hypothetical protein LOC23742 [Homo sapiens]
Length = 1156
Score = 31.6 bits (70), Expect = 1.3
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 25/116 (21%)
Query: 186 PLPIEGR-----KEGVYIKVGSASPFSTCLKMVASPDSH--ARCAQ--GQPPLLSCYDTL 236
P P+EG E + ASP S+CL+ A P +H A CA+ G+P D
Sbjct: 205 PGPLEGNVYHKFSENSMSEKAQASPASSCLEGPAMPSTHSQAGCARHLGKPD----PDAT 260
Query: 237 APHFRVDWCNVTLVDKSVPEPADEVPTP-----------GDGILEHDPFFCPPTEA 281
AP C++ L K E +E P P G + + PF PP A
Sbjct: 261 APPEPAVGCSL-LQQKLAAEVLNEEPPPSSLGLPIPLMSGKRMPDEKPFCIPPRSA 315
>gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo
sapiens]
Length = 475
Score = 31.2 bits (69), Expect = 1.7
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 27 TLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHITYHAHLQGHPDLPRWLRYTQRSPHHP 86
++HP + + +H H + + P H + P++H+ H H HP + ++ + +HP
Sbjct: 67 SIHPPI-HLHIHPPIHPS-IHPPMHSSTHPSIHLFIHIHSSTHPSIHPFIHPSVHPSNHP 124
>gi|223941923 OTU domain containing 1 [Homo sapiens]
Length = 481
Score = 30.4 bits (67), Expect = 2.8
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 186 PLPIEGRKEGVYIKVGSASPFSTCLKMVASPDSHARCAQGQPPLLSCYDTLAPHF 240
P +E + FS+C ++V+ + A A G PP SC L PH+
Sbjct: 55 PAAAAEHREAAAVPAAKMPAFSSCFEVVSGAAAPASAAAG-PPGASCKPPLPPHY 108
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 29.6 bits (65), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 9 LPTHPHLPTHPHLPTHPHLPTHPHLP 34
Score = 29.6 bits (65), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 15 LPTHPHLPTHPHLPTHPHLPTHPHLP 40
Score = 29.6 bits (65), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 21 LPTHPHLPTHPHLPTHPHLPTHPHLP 46
Score = 29.3 bits (64), Expect = 6.3
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLPRWLRYT-------QRSPHHP 86
LP H +P H+ H HL HP + + R + Q + HHP
Sbjct: 27 LPTHPHLPTHPHLPTHPHLPTHPMMSKETRQSKLAEAKEQLTDHHP 72
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 29.6 bits (65), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 9 LPTHPHLPTHPHLPTHPHLPTHPHLP 34
Score = 29.6 bits (65), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 15 LPTHPHLPTHPHLPTHPHLPTHPHLP 40
Score = 29.6 bits (65), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 21 LPTHPHLPTHPHLPTHPHLPTHPHLP 46
Score = 29.3 bits (64), Expect = 6.3
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLPRWLRYT-------QRSPHHP 86
LP H +P H+ H HL HP + + R + Q + HHP
Sbjct: 27 LPTHPHLPTHPHLPTHPHLPTHPMMSKETRQSKLAEAKEQLTDHHP 72
>gi|125988398 leukocyte immunoglobulin-like receptor, subfamily B,
member 2 isoform 2 [Homo sapiens]
Length = 597
Score = 29.6 bits (65), Expect = 4.8
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 253 SVPEPADEVPTPGDGILEHDPFFCPPTEAPDRDFLVDALVTLLVPLLVALLLTLLLAYVM 312
S P P + TPG P P R V ++ +LV +++ LLL LLL ++
Sbjct: 425 SSPPPTGPISTPGPEDQPLTPTGSDPQSGLGRHLGV--VIGILVAVVLLLLLLLLLFLIL 482
Query: 313 CCRREGR 319
RR+G+
Sbjct: 483 RHRRQGK 489
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 29.6 bits (65), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLP 73
LP H +P H+ H HL HP LP
Sbjct: 9 LPTHPHLPTHPHLPTHPHLPTHPHLP 34
Score = 29.3 bits (64), Expect = 6.3
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 48 LPEHVAVPPAVHITYHAHLQGHPDLPRWLRYT-------QRSPHHP 86
LP H +P H+ H HL HP + + R + Q + HHP
Sbjct: 15 LPTHPHLPTHPHLPTHPHLPTHPMMSKETRQSKLAEAKEQLTDHHP 60
>gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens]
Length = 950
Score = 29.6 bits (65), Expect = 4.8
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 129 GPLLPYQAEFLVRSHDAEEVLPSTPASRFLSALGGLWEPGELQLLNVTSAL-----DRGG 183
GP +Q + R AE +LP +R L ++P + Q+L DRGG
Sbjct: 871 GPPPLFQQQRFDRGVGAEPLLPW---NRMLQTQNAAFQPNQYQMLAGPGGYPPRRDDRGG 927
Query: 184 RVPLPIEGRK 193
R P EGRK
Sbjct: 928 RQGYPREGRK 937
>gi|54792129 discoidin, CUB and LCCL domain containing 2 [Homo
sapiens]
Length = 775
Score = 29.3 bits (64), Expect = 6.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 290 ALVTLLVPLLVALLLTLLLAYVMCCRREGRLKRDLATSDI 329
AL +LVP+LV +L TL+L V R K+ T D+
Sbjct: 528 ALAAVLVPVLVMVLTTLILILVCAWHWRNRKKKTEGTYDL 567
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,352,447
Number of Sequences: 37866
Number of extensions: 907735
Number of successful extensions: 2095
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2048
Number of HSP's gapped (non-prelim): 38
length of query: 387
length of database: 18,247,518
effective HSP length: 104
effective length of query: 283
effective length of database: 14,309,454
effective search space: 4049575482
effective search space used: 4049575482
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.