Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SGCE Sequence: fasta or formatted (451aa) NCBI GI: 150378535
Description:

sarcoglycan, epsilon isoform 3

Referenced in:

Muscle

Other entries for this name:
alt prot [437aa] sarcoglycan, epsilon isoform 2
alt prot [462aa] sarcoglycan, epsilon isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         20           1
 C cysteine            1.6          7           2
 D aspartate           4.7         21           1
 E glutamate           6.7         30           2
 F phenylalanine       4.4         20           2
 G glycine             6.0         27           2
 H histidine           1.8          8           2
 I isoleucine          6.4         29           2
 K lysine              4.0         18           2
 L leucine             8.6         39           2
 M methionine          2.9         13           1
 N asparagine          4.9         22           1
 P proline             7.8         35           2
 Q glutamine           4.9         22           3
 R arginine            6.0         27           2
 S serine              5.5         25           2
 T threonine           7.3         33           2
 V valine              6.7         30           1
 W tryptophan          1.6          7           2
 Y tyrosine            4.0         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sarcoglycan, epsilon isoform 3 
SGCE                  0.933   sarcoglycan, epsilon isoform 2 
SGCE                  0.918   sarcoglycan, epsilon isoform 1 
SGCA                  0.308   sarcoglycan, alpha isoform 1 precursor 
SGCA                  0.139   sarcoglycan, alpha isoform 2 precursor 
APBA1                 0.008   amyloid beta A4 precursor protein-binding, family A,...
UGDH                  0.006   UDP-glucose dehydrogenase 
APBA2                 0.006   amyloid beta A4 precursor protein-binding, family A...
APBA2                 0.006   amyloid beta A4 precursor protein-binding, family A,...
NAALAD2               0.006   N-acetylated alpha-linked acidic dipeptidase 2 
PRPF18                0.004   PRP18 pre-mRNA processing factor 18 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press