Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4506805
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506805 sodium channel, voltage-gated, type I, beta isoform
a [Homo sapiens]
(218 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506805 sodium channel, voltage-gated, type I, beta isoform a... 436 e-122
gi|39930610 sodium channel, voltage-gated, type I, beta isoform ... 306 1e-83
gi|9055238 voltage-gated sodium channel beta-3 subunit precursor... 182 2e-46
gi|93587332 voltage-gated sodium channel beta-3 subunit precurso... 182 2e-46
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens] 47 1e-05
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens] 47 1e-05
gi|4505243 myelin protein zero [Homo sapiens] 47 1e-05
gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens] 38 0.006
gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens] 38 0.006
gi|38093645 myelin protein zero-like 3 [Homo sapiens] 37 0.017
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 36 0.029
gi|55769537 zinc finger protein 658 [Homo sapiens] 33 0.19
gi|62865876 immunoglobulin superfamily, member 11 isoform b [Hom... 33 0.25
gi|62865874 immunoglobulin superfamily, member 11 isoform a [Hom... 33 0.25
gi|50511926 Fc fragment of IgG, low affinity IIb, receptor isofo... 32 0.32
gi|50511932 Fc fragment of IgG, low affinity IIb, receptor isofo... 32 0.32
gi|28372555 sodium channel, voltage-gated, type IV, beta isoform... 32 0.32
gi|126116592 Fc fragment of IgG, low affinity IIc, receptor [Hom... 32 0.42
gi|157694505 LINE-1 type transposase domain containing 1 [Homo s... 32 0.42
gi|5901910 CD160 antigen [Homo sapiens] 32 0.55
gi|229089140 leucine rich repeat containing 24 [Homo sapiens] 31 0.93
gi|210031822 Fc fragment of IgG, low affinity IIa, receptor isof... 31 0.93
gi|50511936 Fc fragment of IgG, low affinity IIa, receptor isofo... 31 0.93
gi|68161541 carcinoembryonic antigen-related cell adhesion molec... 30 1.2
gi|19923195 carcinoembryonic antigen-related cell adhesion molec... 30 1.2
gi|48717244 zinc finger protein 782 [Homo sapiens] 30 1.2
gi|50511928 Fc fragment of IgG, low affinity IIb, receptor isofo... 30 1.6
gi|50511930 Fc fragment of IgG, low affinity IIb, receptor isofo... 30 1.6
gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo... 30 1.6
gi|98986445 carcinoembryonic antigen-related cell adhesion molec... 30 2.1
>gi|4506805 sodium channel, voltage-gated, type I, beta isoform a
[Homo sapiens]
Length = 218
Score = 436 bits (1120), Expect = e-122
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR 60
MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR
Sbjct: 1 MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR 60
Query: 61 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE 120
QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE
Sbjct: 61 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE 120
Query: 121 CHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMIY 180
CHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMIY
Sbjct: 121 CHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMIY 180
Query: 181 CYKKIAAATETAAQENASEYLAITSESKENCTGVQVAE 218
CYKKIAAATETAAQENASEYLAITSESKENCTGVQVAE
Sbjct: 181 CYKKIAAATETAAQENASEYLAITSESKENCTGVQVAE 218
>gi|39930610 sodium channel, voltage-gated, type I, beta isoform b
[Homo sapiens]
Length = 268
Score = 306 bits (783), Expect = 1e-83
Identities = 150/155 (96%), Positives = 150/155 (96%)
Query: 1 MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR 60
MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR
Sbjct: 1 MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR 60
Query: 61 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE 120
QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE
Sbjct: 61 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE 120
Query: 121 CHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMA 155
CHVYRLLFFENYEHNTSVVKKIHIEVVDK A
Sbjct: 121 CHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAA 155
>gi|9055238 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 182 bits (462), Expect = 2e-46
Identities = 103/206 (50%), Positives = 133/206 (64%), Gaps = 7/206 (3%)
Query: 5 LALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGT 64
LA +V VS CVEV SETEAV G K+ CISC +R E A T EW +R +G
Sbjct: 10 LASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGG 69
Query: 65 EEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVY 124
++F+ I Y N ++E F+GR+ WNGS KDLQD+SI + NVT N SG Y C+V
Sbjct: 70 KDFL-IYEYRNGHQEVESP--FQGRLQWNGS---KDLQDVSITVLNVTLNDSGLYTCNVS 123
Query: 125 RLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMIYCYKK 184
R FE + + I + V ++A D S+VSEIMMY+L+V LT+WL+ EMIYCY+K
Sbjct: 124 REFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRK 183
Query: 185 IAAATETAAQENASEYLAITSESKEN 210
++ A E AAQENAS+YLAI SE+KEN
Sbjct: 184 VSKA-EEAAQENASDYLAIPSENKEN 208
>gi|93587332 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 182 bits (462), Expect = 2e-46
Identities = 103/206 (50%), Positives = 133/206 (64%), Gaps = 7/206 (3%)
Query: 5 LALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGT 64
LA +V VS CVEV SETEAV G K+ CISC +R E A T EW +R +G
Sbjct: 10 LASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGG 69
Query: 65 EEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVY 124
++F+ I Y N ++E F+GR+ WNGS KDLQD+SI + NVT N SG Y C+V
Sbjct: 70 KDFL-IYEYRNGHQEVESP--FQGRLQWNGS---KDLQDVSITVLNVTLNDSGLYTCNVS 123
Query: 125 RLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMIYCYKK 184
R FE + + I + V ++A D S+VSEIMMY+L+V LT+WL+ EMIYCY+K
Sbjct: 124 REFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRK 183
Query: 185 IAAATETAAQENASEYLAITSESKEN 210
++ A E AAQENAS+YLAI SE+KEN
Sbjct: 184 VSKA-EEAAQENASDYLAIPSENKEN 208
>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
Length = 209
Score = 47.4 bits (111), Expect = 1e-05
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 14/180 (7%)
Query: 3 RLLALVVGAALVSSACG-GCVEVDSETE--AVYGMTFKILCISCKRRSETNAETFTEWTF 59
R L V+ AAL G +EV + E G K+ C K S T T W+F
Sbjct: 18 RWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTC-KFKSTSTTGGLTSVSWSF 76
Query: 60 RQKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDY 119
+ +G + V Y + L F+ R+ W G D +D SI I N+ + H+G Y
Sbjct: 77 QPEGADTTVSFFHYSQGQVYLGNYPPFKDRISW---AGDLDKKDASINIENMQFIHNGTY 133
Query: 120 ECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMI 179
C V +N I + VV+K N + V ++ V VVL + L+ MI
Sbjct: 134 ICDV------KNPPDIVVQPGHIRLYVVEKENLPVFP-VWVVVGIVTAVVLGLTLLISMI 186
>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
Length = 269
Score = 47.4 bits (111), Expect = 1e-05
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 14/180 (7%)
Query: 3 RLLALVVGAALVSSACG-GCVEVDSETE--AVYGMTFKILCISCKRRSETNAETFTEWTF 59
R L V+ AAL G +EV + E G K+ C K S T T W+F
Sbjct: 18 RWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTC-KFKSTSTTGGLTSVSWSF 76
Query: 60 RQKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDY 119
+ +G + V Y + L F+ R+ W G D +D SI I N+ + H+G Y
Sbjct: 77 QPEGADTTVSFFHYSQGQVYLGNYPPFKDRISW---AGDLDKKDASINIENMQFIHNGTY 133
Query: 120 ECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMI 179
C V +N I + VV+K N + V ++ V VVL + L+ MI
Sbjct: 134 ICDV------KNPPDIVVQPGHIRLYVVEKENLPVFP-VWVVVGIVTAVVLGLTLLISMI 186
>gi|4505243 myelin protein zero [Homo sapiens]
Length = 258
Score = 47.0 bits (110), Expect = 1e-05
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 11/188 (5%)
Query: 4 LLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKG 63
L L+ + ++S A V D E G + C ++ +FT W ++ +G
Sbjct: 24 LAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFT-WRYQPEG 82
Query: 64 TEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHV 123
+ + I Y ++E F+ R+ W G K D SI I N+ Y+ +G + C V
Sbjct: 83 GRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWK---DGSIVIHNLDYSDNGTFTCDV 139
Query: 124 YRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMI-YCY 182
+N ++ + V +K ++ ++ VL VVL + L+ ++ YC+
Sbjct: 140 ------KNPPDIVGKTSQVTLYVFEKVPTRYGVVLGAVIGGVLGVVLLLLLLFYVVRYCW 193
Query: 183 KKIAAATE 190
+ AA +
Sbjct: 194 LRRQAALQ 201
>gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 38.1 bits (87), Expect = 0.006
Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 23/214 (10%)
Query: 3 RLLALVVGAALVSSACGGCVEVDSET--EAVYGMTFKILCISCKRRSETNAETFTEWTFR 60
R + L++G L + VE+ + EAV G ++ C +A T T W FR
Sbjct: 8 RAVLLLLGIQLTALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVT-WNFR 66
Query: 61 --QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGD 118
G E+FV Y + Q RF+ RV W+G+ + D SI + + ++ +G
Sbjct: 67 PLDGGPEQFV--FYYHIDPFQ-PMSGRFKDRVSWDGN---PERYDASILLWKLQFDDNGT 120
Query: 119 YECHVYRLLFFENYEHNTSVVKKIHIEVVDKAN----RDMASIVSEIMMYVLIVVLTIWL 174
Y C V +N V+ +I + VV +A + ++I+V+ + L
Sbjct: 121 YTCQV------KNPPDVDGVIGEIRLSVVHTVRFSEIHFLALAIGSACALMIIIVIVVVL 174
Query: 175 VAEMIYCYKKIAAATETAAQENASEYLAITSESK 208
Y K+ A + + E + E K
Sbjct: 175 FQH--YRKKRWAERAHKVVEIKSKEEERLNQEKK 206
>gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 38.1 bits (87), Expect = 0.006
Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 23/214 (10%)
Query: 3 RLLALVVGAALVSSACGGCVEVDSET--EAVYGMTFKILCISCKRRSETNAETFTEWTFR 60
R + L++G L + VE+ + EAV G ++ C +A T T W FR
Sbjct: 8 RAVLLLLGIQLTALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVT-WNFR 66
Query: 61 --QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGD 118
G E+FV Y + Q RF+ RV W+G+ + D SI + + ++ +G
Sbjct: 67 PLDGGPEQFV--FYYHIDPFQ-PMSGRFKDRVSWDGN---PERYDASILLWKLQFDDNGT 120
Query: 119 YECHVYRLLFFENYEHNTSVVKKIHIEVVDKAN----RDMASIVSEIMMYVLIVVLTIWL 174
Y C V +N V+ +I + VV +A + ++I+V+ + L
Sbjct: 121 YTCQV------KNPPDVDGVIGEIRLSVVHTVRFSEIHFLALAIGSACALMIIIVIVVVL 174
Query: 175 VAEMIYCYKKIAAATETAAQENASEYLAITSESK 208
Y K+ A + + E + E K
Sbjct: 175 FQH--YRKKRWAERAHKVVEIKSKEEERLNQEKK 206
>gi|38093645 myelin protein zero-like 3 [Homo sapiens]
Length = 235
Score = 36.6 bits (83), Expect = 0.017
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 22 VEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILRYENEVLQLE 81
+ D+ G K+ C + K S+ + +WT+R + V I Y++
Sbjct: 34 IRADAHVRGYVGEKIKLKC-TFKSTSDVTDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTT 92
Query: 82 EDERFEGRVVWNGS--RGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVV 139
F R+ W G+ +G D SI I+N T +G + C V + HN +
Sbjct: 93 AG-TFRDRISWVGNVYKG-----DASISISNPTIKDNGTFSCAVKNP---PDVHHN---I 140
Query: 140 KKIHIEVVDKANRDMASIVSEIMMYVLI---VVLTIWLV 175
+ V ++ M S V+ + + V + VV+ + LV
Sbjct: 141 PMTELTVTERGFGTMLSSVALLSILVFVPSAVVVALLLV 179
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 35.8 bits (81), Expect = 0.029
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 14/178 (7%)
Query: 22 VEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILRYENEVLQLE 81
V V + + G ++ C + + + WT+++ L++ +++ L+
Sbjct: 32 VTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKIINLK 91
Query: 82 EDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKK 141
ERF+ RV ++G+ D+S+ + NV G Y C++ N K
Sbjct: 92 L-ERFQDRVEFSGNPSK---YDVSVMLRNVQPEDEGIYNCYIM------NPPDRHRGHGK 141
Query: 142 IHIEVV--DKANRD--MASIVSEIMMYVLIVVLTIWLVAEMIYCYKKIAAATETAAQE 195
IH++V+ + RD +A IV + L VV+ + +V + + K+ +T+ E
Sbjct: 142 IHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKKEQKLSTDDLKTE 199
>gi|55769537 zinc finger protein 658 [Homo sapiens]
Length = 1059
Score = 33.1 bits (74), Expect = 0.19
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 93 NGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSV 138
N S+ + QD+++ T + H G E +YR + ENY H SV
Sbjct: 2 NMSQASVSFQDVTVEFTREEWQHLGPVERTLYRDVMLENYSHLISV 47
>gi|62865876 immunoglobulin superfamily, member 11 isoform b [Homo
sapiens]
Length = 431
Score = 32.7 bits (73), Expect = 0.25
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 85 RFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRL 126
RF GRV G GT ++SIFI N + +G Y+C V L
Sbjct: 87 RFHGRV---GFTGTMPATNVSIFINNTQLSDTGTYQCLVNNL 125
>gi|62865874 immunoglobulin superfamily, member 11 isoform a [Homo
sapiens]
Length = 430
Score = 32.7 bits (73), Expect = 0.25
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 85 RFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRL 126
RF GRV G GT ++SIFI N + +G Y+C V L
Sbjct: 86 RFHGRV---GFTGTMPATNVSIFINNTQLSDTGTYQCLVNNL 124
>gi|50511926 Fc fragment of IgG, low affinity IIb, receptor isoform
3 [Homo sapiens]
Length = 291
Score = 32.3 bits (72), Expect = 0.32
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 93 NGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANR 152
NG D + I ++HSGDY C N + K + I V ++
Sbjct: 168 NGKSKKFSRSDPNFSIPQANHSHSGDYHC-------TGNIGYTLYSSKPVTITVQAPSSS 220
Query: 153 DMASIVSEIMMYVLIVVLTIWLVAEMIYCYKKIAAATETAAQE 195
M IV+ ++ + V + V +IYC KK +A T E
Sbjct: 221 PMGIIVA--VVTGIAVAAIVAAVVALIYCRKKRISANPTNPDE 261
>gi|50511932 Fc fragment of IgG, low affinity IIb, receptor isoform
2 [Homo sapiens]
Length = 290
Score = 32.3 bits (72), Expect = 0.32
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 93 NGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANR 152
NG D + I ++HSGDY C N + K + I V ++
Sbjct: 167 NGKSKKFSRSDPNFSIPQANHSHSGDYHC-------TGNIGYTLYSSKPVTITVQAPSSS 219
Query: 153 DMASIVSEIMMYVLIVVLTIWLVAEMIYCYKKIAAATETAAQE 195
M IV+ ++ + V + V +IYC KK +A T E
Sbjct: 220 PMGIIVA--VVTGIAVAAIVAAVVALIYCRKKRISANPTNPDE 260
>gi|28372555 sodium channel, voltage-gated, type IV, beta isoform 1
precursor [Homo sapiens]
Length = 228
Score = 32.3 bits (72), Expect = 0.32
Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 57 WTFRQKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHS 116
WT+ + + +NE + + + R+ GS K + ++SI + ++ ++ +
Sbjct: 68 WTYNSSDAFKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEK-MNNISIVLRDLEFSDT 126
Query: 117 GDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVA 176
G Y CHV E+N I ++VVD+ + + + + + +L VV + +
Sbjct: 127 GKYTCHVK-----NPKENNLQHHATIFLQVVDR----LEEVDNTVTLIILAVVGGVIGLL 177
Query: 177 EMIYCYKKIAAATETAAQENASEYLAITSESKEN 210
+I KK+ +E E L ++S +N
Sbjct: 178 ILILLIKKLIIFILKKTREKKKECL-VSSSGNDN 210
>gi|126116592 Fc fragment of IgG, low affinity IIc, receptor [Homo
sapiens]
Length = 323
Score = 32.0 bits (71), Expect = 0.42
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 93 NGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANR 152
NG D + I ++HSGDY C N + K + I V ++
Sbjct: 168 NGKSKKFSRSDPNFSIPQANHSHSGDYHC-------TGNIGYTLYSSKPVTITVQAPSSS 220
Query: 153 DMASIVSEIMMYVLIVVLTIWLVAEMIYCYKKIAAATET 191
M IV+ ++ + V + V +IYC KK +A T
Sbjct: 221 PMGIIVA--VVTGIAVAAIVAAVVALIYCRKKRISANST 257
>gi|157694505 LINE-1 type transposase domain containing 1 [Homo
sapiens]
Length = 865
Score = 32.0 bits (71), Expect = 0.42
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 25 DSETEAVYGMTFKILCISCKRRSETNAET-FTEWTFRQKGTEEFVKILRYENEVLQLEED 83
+S + V G + LC R N FTE R+ G +EFVK +R E + +L+
Sbjct: 164 ESRSYEVMGSMEETLCNIDDRDGNRNVHLEFTERESRKDGEDEFVKEMREERKFQKLKNK 223
Query: 84 ERFEGRVVWNGSRGTKDLQDLSIFITNV 111
E V SR K L D +T V
Sbjct: 224 EE-----VLKASREEKVLMDEGAVLTLV 246
>gi|5901910 CD160 antigen [Homo sapiens]
Length = 181
Score = 31.6 bits (70), Expect = 0.55
Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 38/184 (20%)
Query: 6 ALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKG-- 63
AL + A+V GGC+ + S G ++C ++ E AE F + + +
Sbjct: 11 ALAILLAIVDIQSGGCINITSSASQE-GTRLNLICTVWHKKEE--AEGFVVFLCKDRSGD 67
Query: 64 --TEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIF-ITNVTYNHSGDYE 120
E +K LR + + G G ++ +F I+ VT HSG Y+
Sbjct: 68 CSPETSLKQLRLKRDP----------------GIDGVGEISSQLMFTISQVTPLHSGTYQ 111
Query: 121 C-------------HVYRLLFFENYEHN-TSVVKKIHIEVVDKANRDMASIVSEIMMYVL 166
C H + +LF E + T + ++ H+E + + E + +L
Sbjct: 112 CCARSQKSGIRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVML 171
Query: 167 IVVL 170
+ L
Sbjct: 172 VTSL 175
>gi|229089140 leucine rich repeat containing 24 [Homo sapiens]
Length = 513
Score = 30.8 bits (68), Expect = 0.93
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 85 RFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYEC 121
+ EG ++ G D +F++N+T H+G YEC
Sbjct: 309 QLEGGLLGLGGHSASDTGSGMLFLSNITLAHAGKYEC 345
>gi|210031822 Fc fragment of IgG, low affinity IIa, receptor isoform
1 [Homo sapiens]
Length = 317
Score = 30.8 bits (68), Expect = 0.93
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 103 DLSIFITNVTYNHSGDYEC--HVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSE 160
D + I ++HSGDY C ++ LF +S I ++V + I+
Sbjct: 169 DPTFSIPQANHSHSGDYHCTGNIGYTLF-------SSKPVTITVQVPSMGSSSPMGIIVA 221
Query: 161 IMMYVLIVVLTIWLVAEMIYCYKKIAAATET 191
+++ + + +VA +IYC KK +A T
Sbjct: 222 VVIATAVAAIVAAVVA-LIYCRKKRISANST 251
>gi|50511936 Fc fragment of IgG, low affinity IIa, receptor isoform
2 [Homo sapiens]
Length = 316
Score = 30.8 bits (68), Expect = 0.93
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 103 DLSIFITNVTYNHSGDYEC--HVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSE 160
D + I ++HSGDY C ++ LF +S I ++V + I+
Sbjct: 168 DPTFSIPQANHSHSGDYHCTGNIGYTLF-------SSKPVTITVQVPSMGSSSPMGIIVA 220
Query: 161 IMMYVLIVVLTIWLVAEMIYCYKKIAAATET 191
+++ + + +VA +IYC KK +A T
Sbjct: 221 VVIATAVAAIVAAVVA-LIYCRKKRISANST 250
>gi|68161541 carcinoembryonic antigen-related cell adhesion molecule
1 isoform 2 precursor [Homo sapiens]
Length = 464
Score = 30.4 bits (67), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 97 GTKDLQDLSIFITNVTYNHSGDYECH 122
GT +FI N+T N+SG Y CH
Sbjct: 275 GTFQQSTQELFIPNITVNNSGSYTCH 300
>gi|19923195 carcinoembryonic antigen-related cell adhesion molecule
1 isoform 1 precursor [Homo sapiens]
Length = 526
Score = 30.4 bits (67), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 97 GTKDLQDLSIFITNVTYNHSGDYECH 122
GT +FI N+T N+SG Y CH
Sbjct: 275 GTFQQSTQELFIPNITVNNSGSYTCH 300
>gi|48717244 zinc finger protein 782 [Homo sapiens]
Length = 699
Score = 30.4 bits (67), Expect = 1.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 93 NGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSV 138
N + + QD+++ + + H G E +YR + ENY H SV
Sbjct: 2 NTFQASVSFQDVTVEFSQEEWQHMGPVERTLYRDVMLENYSHLVSV 47
>gi|50511928 Fc fragment of IgG, low affinity IIb, receptor isoform
4 [Homo sapiens]
Length = 309
Score = 30.0 bits (66), Expect = 1.6
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 93 NGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANR 152
NG D + I ++HSGDY C N + K + I V ++
Sbjct: 167 NGKSKKFSRSDPNFSIPQANHSHSGDYHC-------TGNIGYTLYSSKPVTITVQAPSSS 219
Query: 153 DMASIVSEIMMYVLIVVLTIWLVAEMIYCYKKIAAA 188
M IV+ ++ + V + V +IYC KK +A
Sbjct: 220 PMGIIVA--VVTGIAVAAIVAAVVALIYCRKKRISA 253
>gi|50511930 Fc fragment of IgG, low affinity IIb, receptor isoform
1 [Homo sapiens]
Length = 310
Score = 30.0 bits (66), Expect = 1.6
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 93 NGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANR 152
NG D + I ++HSGDY C N + K + I V ++
Sbjct: 168 NGKSKKFSRSDPNFSIPQANHSHSGDYHC-------TGNIGYTLYSSKPVTITVQAPSSS 220
Query: 153 DMASIVSEIMMYVLIVVLTIWLVAEMIYCYKKIAAA 188
M IV+ ++ + V + V +IYC KK +A
Sbjct: 221 PMGIIVA--VVTGIAVAAIVAAVVALIYCRKKRISA 254
>gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo
sapiens]
Length = 1336
Score = 30.0 bits (66), Expect = 1.6
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 105 SIFITNVTYNHSGDYECHVYRLLFFENY---EHNTSVVKKIHIEVVDK 149
S F+ NVTY+ +G Y CH Y L + + HNT + + VVDK
Sbjct: 376 SFFLNNVTYSDTGIYSCH-YLLTWKTSIRMPSHNT-----VELMVVDK 417
>gi|98986445 carcinoembryonic antigen-related cell adhesion molecule
5 preproprotein [Homo sapiens]
Length = 702
Score = 29.6 bits (65), Expect = 2.1
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 106 IFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYV 165
+FI +T N++G Y C V L N S+VK I + + A IM+ V
Sbjct: 640 LFIAKITPNNNGTYACFVSNLA----TGRNNSIVKSITVSASGTSPGLSAGATVGIMIGV 695
Query: 166 LIVVLTI 172
L+ V I
Sbjct: 696 LVGVALI 702
Score = 28.1 bits (61), Expect = 6.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 97 GTKDLQDLSIFITNVTYNHSGDYECHVY 124
GT +FI N+T N+SG Y C +
Sbjct: 275 GTFQQSTQELFIPNITVNNSGSYTCQAH 302
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,789,298
Number of Sequences: 37866
Number of extensions: 262943
Number of successful extensions: 1077
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 52
length of query: 218
length of database: 18,247,518
effective HSP length: 98
effective length of query: 120
effective length of database: 14,536,650
effective search space: 1744398000
effective search space used: 1744398000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.