Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4506619
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506619 ribosomal protein L24 [Homo sapiens]
(157 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506619 ribosomal protein L24 [Homo sapiens] 310 3e-85
gi|10047102 ribosomal protein L24-like [Homo sapiens] 79 2e-15
gi|239747737 PREDICTED: similar to hCG1644578 [Homo sapiens] 63 1e-10
gi|169213020 PREDICTED: similar to ribosomal protein L24-like [H... 55 2e-08
gi|89047474 PREDICTED: similar to ribosomal protein L24-like [Ho... 55 2e-08
gi|27485363 PREDICTED: similar to ribosomal protein L24-like [Ho... 55 2e-08
gi|169163248 PREDICTED: similar to hCG1644578 [Homo sapiens] 55 2e-08
gi|169164029 PREDICTED: similar to hCG1644578 [Homo sapiens] 55 3e-08
gi|4885375 histone cluster 1, H1c [Homo sapiens] 42 3e-04
gi|4885379 histone cluster 1, H1e [Homo sapiens] 40 0.001
gi|4885377 histone cluster 1, H1d [Homo sapiens] 38 0.003
gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens] 35 0.026
gi|4885381 histone cluster 1, H1b [Homo sapiens] 35 0.026
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 35 0.026
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 35 0.034
gi|78000183 ribosomal protein L14 [Homo sapiens] 34 0.045
gi|78000181 ribosomal protein L14 [Homo sapiens] 34 0.045
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 34 0.045
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 34 0.058
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 34 0.058
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 34 0.058
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 34 0.058
gi|222136585 timeless homolog [Homo sapiens] 34 0.058
gi|20357552 cortactin isoform a [Homo sapiens] 34 0.058
gi|20357556 cortactin isoform b [Homo sapiens] 34 0.058
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 33 0.100
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 33 0.100
gi|104526627 triadin [Homo sapiens] 33 0.100
gi|30795231 brain abundant, membrane attached signal protein 1 [... 33 0.13
gi|102467235 inner centromere protein antigens 135/155kDa isofor... 32 0.17
>gi|4506619 ribosomal protein L24 [Homo sapiens]
Length = 157
Score = 310 bits (794), Expect = 3e-85
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 61 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQ 120
KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQ
Sbjct: 61 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQ 120
Query: 121 ASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
ASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR
Sbjct: 121 ASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
>gi|10047102 ribosomal protein L24-like [Homo sapiens]
Length = 163
Score = 78.6 bits (192), Expect = 2e-15
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 11/130 (8%)
Query: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
M++E C F IYPGHG + R D KVF+F +KC F KRNPR++ WT +R+
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 61 K----GQSEEIQKKRTRRAVKFQRAITGASL------ADIMAKRNQKPEVRKAQREQAIR 110
K S E +K+R +K+QR + ++ +I KR K + + ++ + ++
Sbjct: 61 KELTVDNSFEFEKRR-NEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQ 119
Query: 111 AAKEAKKAKQ 120
++ K+ KQ
Sbjct: 120 KVQDIKEVKQ 129
>gi|239747737 PREDICTED: similar to hCG1644578 [Homo sapiens]
Length = 161
Score = 62.8 bits (151), Expect = 1e-10
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
M +E C F IYPGH + + + KVF+F N+K F KRNPR++ WT + +
Sbjct: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
Query: 61 K----GQSEEIQKKRTRRAVKFQRAITGASL------ADIMAKRNQKPEVRKAQREQAIR 110
K S E +K+R +K+Q + ++ +I KR K V + ++ +A++
Sbjct: 61 KELTVDNSFEFEKRR-NEPIKYQXELWNKTIEAIKRVEEIKQKRQAKFVVNRLKKNKALQ 119
Query: 111 AAKEAKKAKQ 120
K K+ KQ
Sbjct: 120 --KLXKEVKQ 127
>gi|169213020 PREDICTED: similar to ribosomal protein L24-like [Homo
sapiens]
Length = 187
Score = 55.5 bits (132), Expect = 2e-08
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
M++E C F IYPG+ + D KVF F +KC F K NPR++ T +++
Sbjct: 1 MRIEKCYFCSGPIYPGYDMLFIHNDCKVFGFCKSKCHKHFKKKCNPRKVRRTKPFQKAAG 60
Query: 61 K----GQSEEIQKKRTRRAVKFQRAITGASL------ADIMAKRNQKPEVRKAQREQAIR 110
K S E K R +K+QR + ++ +I K K + + ++ + ++
Sbjct: 61 KELTVDNSFEFDKHR-NELIKYQRELWNKTIDAMKRVEEIKQKHQAKFIMNRLKKNKELQ 119
Query: 111 AAKEAKKAKQA 121
++ K+ KQ+
Sbjct: 120 KVQDIKEVKQS 130
>gi|89047474 PREDICTED: similar to ribosomal protein L24-like [Homo
sapiens]
Length = 187
Score = 55.5 bits (132), Expect = 2e-08
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
M++E C F IYPG+ + D KVF F +KC F K NPR++ T +++
Sbjct: 1 MRIEKCYFCSGPIYPGYDMLFIHNDCKVFGFCKSKCHKHFKKKCNPRKVRRTKPFQKAAG 60
Query: 61 K----GQSEEIQKKRTRRAVKFQRAITGASL------ADIMAKRNQKPEVRKAQREQAIR 110
K S E K R +K+QR + ++ +I K K + + ++ + ++
Sbjct: 61 KELTVDNSFEFDKHR-NELIKYQRELWNKTIDAMKRVEEIKQKHQAKFIMNRLKKNKELQ 119
Query: 111 AAKEAKKAKQA 121
++ K+ KQ+
Sbjct: 120 KVQDIKEVKQS 130
>gi|27485363 PREDICTED: similar to ribosomal protein L24-like [Homo
sapiens]
Length = 187
Score = 55.5 bits (132), Expect = 2e-08
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
M++E C F IYPG+ + D KVF F +KC F K NPR++ T +++
Sbjct: 1 MRIEKCYFCSGPIYPGYDMLFIHNDCKVFGFCKSKCHKHFKKKCNPRKVRRTKPFQKAAG 60
Query: 61 K----GQSEEIQKKRTRRAVKFQRAITGASL------ADIMAKRNQKPEVRKAQREQAIR 110
K S E K R +K+QR + ++ +I K K + + ++ + ++
Sbjct: 61 KELTVDNSFEFDKHR-NELIKYQRELWNKTIDAMKRVEEIKQKHQAKFIMNRLKKNKELQ 119
Query: 111 AAKEAKKAKQA 121
++ K+ KQ+
Sbjct: 120 KVQDIKEVKQS 130
>gi|169163248 PREDICTED: similar to hCG1644578 [Homo sapiens]
Length = 184
Score = 55.1 bits (131), Expect = 2e-08
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 28/171 (16%)
Query: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRR--- 57
M +E C F IYPGH + + + KVF+F N+K F KRNPR++ WT + +
Sbjct: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWTKAFWKAAD 60
Query: 58 ------------KHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQR 105
KH KG + + R + F + I N E+
Sbjct: 61 KELTVDNSFEFEKHHKGIGISVLEMNNRSS-NFTKIIN--------TTENLVWELLAIPN 111
Query: 106 EQAIRA--AKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVG 154
R+ K+ KA + + A A KAA K + V +S P++G
Sbjct: 112 NYCTRSFLCKKCLKAGRCANYVVTGAWSA--KAAEASKKFEIVNISYPKLG 160
>gi|169164029 PREDICTED: similar to hCG1644578 [Homo sapiens]
Length = 184
Score = 54.7 bits (130), Expect = 3e-08
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWT 52
M +E C F IYPGH + + + KVF+F N+K F KRNPR++ WT
Sbjct: 1 MCIEKCYFCSGSIYPGHSMMFVQNNCKVFRFCNSKYHKNFKKKRNPRKVGWT 52
>gi|4885375 histone cluster 1, H1c [Homo sapiens]
Length = 213
Score = 41.6 bits (96), Expect = 3e-04
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 58 KHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117
K K ++ + K+ A K + G + AK+ K + A + AK KK
Sbjct: 117 KPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKK 176
Query: 118 AKQAS-KKTAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
AK A KK A +AAKA A K K+VKP K +AP+
Sbjct: 177 AKVAKPKKAAKSAAKAVKPKAAKPKVVKP-KKAAPK 211
Score = 28.1 bits (61), Expect = 3.2
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 57 RKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQR--EQAIRAAK- 113
+K KK KK ++ K + A++ +AK +K +V K ++ + A +A K
Sbjct: 136 KKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKP 195
Query: 114 EAKKAKQASKKTAMAAAKAPTKAAPKQK 141
+A K K P KAAPK+K
Sbjct: 196 KAAKPKVVK----------PKKAAPKKK 213
>gi|4885379 histone cluster 1, H1e [Homo sapiens]
Length = 219
Score = 39.7 bits (91), Expect = 0.001
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 58 KHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117
K K ++ + K+ A K + TGA+ AK+ K KA++ A AK+AK
Sbjct: 117 KPKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPK----KAKKPAAAAGAKKAKS 172
Query: 118 AKQASKKTAMAAAKAPTKA-APKQKIVKPVKVSAPR 152
K+A A K+P KA A K K KP K + P+
Sbjct: 173 PKKAKAAKPKKAPKSPAKAKAVKPKAAKP-KTAKPK 207
Score = 35.4 bits (80), Expect = 0.020
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 57 RKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAK 116
+K KK KK ++ K + A+ A AK +K + K ++ A +A
Sbjct: 136 KKPKKATGAATPKKSAKKTPKKAKKPAAAAGAK-KAKSPKKAKAAKPKKAPKSPAKAKAV 194
Query: 117 KAKQASKKTAMAAAKAPTKAAPKQK 141
K K A KTA A P KAA K+K
Sbjct: 195 KPKAAKPKTAKPKAAKPKKAAAKKK 219
Score = 30.4 bits (67), Expect = 0.65
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 64 SEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASK 123
S ++ KK K + GA+ A A +KP+ A K KKAK+ +
Sbjct: 104 SFKLNKKAASGEAKPKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAA 163
Query: 124 KTAMAAAKAPTK---AAPKQKIVKPVKVSA 150
AK+P K A PK+ P K A
Sbjct: 164 AAGAKKAKSPKKAKAAKPKKAPKSPAKAKA 193
>gi|4885377 histone cluster 1, H1d [Homo sapiens]
Length = 221
Score = 38.1 bits (87), Expect = 0.003
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 58 KHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117
K K ++ + ++ A K + + GA+ K+ K + A + AK AKK
Sbjct: 118 KPKAKKAGAAKPRKPAGAAKKPKKVAGAATPKKSIKKTPKKVKKPATAAGTKKVAKSAKK 177
Query: 118 AKQASKKTAMAAAKAPTKA-APKQKIVKPVKVSAPRV 153
K K AAK+P KA APK K KP K P+V
Sbjct: 178 VKTPQPK---KAAKSPAKAKAPKPKAAKP-KSGKPKV 210
Score = 36.2 bits (82), Expect = 0.012
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 70 KRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAA 129
K+T + VK G AK+ + P+ +KA + A A + K AK S K +
Sbjct: 153 KKTPKKVKKPATAAGTKKVAKSAKKVKTPQPKKAAKSPAKAKAPKPKAAKPKSGKPKVTK 212
Query: 130 AKAPTKAAPKQK 141
AK KAAPK+K
Sbjct: 213 AK---KAAPKKK 221
>gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens]
Length = 490
Score = 35.0 bits (79), Expect = 0.026
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 61 KGQSEEIQKKRTRRAVKFQRAITGASLA---------DIMAKRN----QKPEVRKAQREQ 107
KG SE++ +K + F + A+L D KR+ +K E R+ +RE+
Sbjct: 235 KGLSEKLPEKWESVKLLFVKTEKSAALPIFSSFVSNWDEATKRSLLNKKKKEARRKRRER 294
Query: 108 AIRAAKEAKKAKQASKKTAMAAAK---APTKAAPKQKIVKPVKVSAPRVGGKR 157
KE KK +Q ++KTA +K AP K + K P G K+
Sbjct: 295 NFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKK 347
>gi|4885381 histone cluster 1, H1b [Homo sapiens]
Length = 226
Score = 35.0 bits (79), Expect = 0.026
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 59 HKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK- 117
+KK S E + K + + GA+ K V+K ++ AA KK
Sbjct: 111 NKKAASGEAKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKV 170
Query: 118 AKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
AK K A A K TK+ K K VKP K + P+
Sbjct: 171 AKSPKKAKAAAKPKKATKSPAKPKAVKP-KAAKPK 204
Score = 31.6 bits (70), Expect = 0.29
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 58 KHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV----RKAQREQAIRAAK 113
K KK + + +K K ++A K+ +KP + A+ + +AA
Sbjct: 122 KAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAAA 181
Query: 114 EAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
+ KKA ++ K KA A K K KP A + K+
Sbjct: 182 KPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKK 225
Score = 26.9 bits (58), Expect = 7.1
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 57 RKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAK 116
+K KK + K+T + K A +A K + +KA + A A + K
Sbjct: 140 KKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAAAKPKKATKSPAKPKAVKPK 199
Query: 117 KAKQASKKTAMAAAKA--PTKAAPKQK 141
AK + K A KA KAA K+K
Sbjct: 200 AAKPKAAKPKAAKPKAAKAKKAAAKKK 226
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 35.0 bits (79), Expect = 0.026
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 43 KRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRK 102
K+ P + + K + EE QK+ +K L ++ AKR ++ + +
Sbjct: 333 KKGPSKATVKAMQEALAKLKEEEERQKREEEERIK--------RLEELEAKRKEEERLEQ 384
Query: 103 AQREQAIRAAKEAK-------KAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
+RE+ + KE K K S++ A A A+A K Q + P K S P+
Sbjct: 385 EKRERKKQKEKERKERLKKEGKLLTKSQREARARAEATLKLLQAQGVEVPSKDSLPK 441
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 34.7 bits (78), Expect = 0.034
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 57 RKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAK 116
+K +K + EE++K+ + K ++ + + K EV+K ++++ + KE K
Sbjct: 670 KKEEKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPK 729
Query: 117 K-----AKQASK-KTAMAAAKAPTKAAP----KQKIVKPVKVSA--PRVGGK 156
K K A K T ++ AK P P K++ VK V+A P+ GK
Sbjct: 730 KEIKKLPKDAKKSSTPLSEAKKPAALKPKVPKKEESVKKDSVAAGKPKEKGK 781
>gi|78000183 ribosomal protein L14 [Homo sapiens]
Length = 215
Score = 34.3 bits (77), Expect = 0.045
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 51 WTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQA-- 108
W + +K + + + + +A K + I + K+ QK + KA ++A
Sbjct: 91 WAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEV-----KKLQKAALLKASPKKAPG 145
Query: 109 ----IRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
AA A AK +KK A+ KAP + P QK AP+
Sbjct: 146 TKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPK 193
>gi|78000181 ribosomal protein L14 [Homo sapiens]
Length = 215
Score = 34.3 bits (77), Expect = 0.045
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 51 WTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQA-- 108
W + +K + + + + +A K + I + K+ QK + KA ++A
Sbjct: 91 WAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEV-----KKLQKAALLKASPKKAPG 145
Query: 109 ----IRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
AA A AK +KK A+ KAP + P QK AP+
Sbjct: 146 TKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPK 193
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 34.3 bits (77), Expect = 0.045
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 56 RRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEA 115
+++HK S + + Q + + +D + +K + RK + + R K+
Sbjct: 188 KKRHKSSSSSSSSSSDSDSSSDSQ---SSSDSSDSESATEEKSKKRKKKHRKNSRKHKKE 244
Query: 116 KKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKV 148
KK ++ SKK+A + ++A A Q V+P ++
Sbjct: 245 KKKRKKSKKSASSESEAENLEAQPQSTVRPEEI 277
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 33.9 bits (76), Expect = 0.058
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 58 KHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117
+ K+ + EE+ +++ A++ QR +A R Q+ E + Q+E+A+R +E ++
Sbjct: 770 ERKRREEEELARRKQEEALRRQRE-------QEIALRRQREEEERQQQEEALRRLEERRR 822
Query: 118 AKQASKKTAMAAAKAPTKAA 137
++ +K K +AA
Sbjct: 823 EEEERRKQEELLRKQEEEAA 842
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
sapiens]
Length = 1320
Score = 33.9 bits (76), Expect = 0.058
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 58 KHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117
+ K+ + EE+ +++ A++ QR +A R Q+ E + Q+E+A+R +E ++
Sbjct: 797 ERKRREEEELARRKQEEALRRQRE-------QEIALRRQREEEERQQQEEALRRLEERRR 849
Query: 118 AKQASKKTAMAAAKAPTKAA 137
++ +K K +AA
Sbjct: 850 EEEERRKQEELLRKQEEEAA 869
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 33.9 bits (76), Expect = 0.058
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 58 KHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117
+ K+ + EE+ +++ A++ QR +A R Q+ E + Q+E+A+R +E ++
Sbjct: 776 ERKRREEEELARRKQEEALRRQRE-------QEIALRRQREEEERQQQEEALRRLEERRR 828
Query: 118 AKQASKKTAMAAAKAPTKAA 137
++ +K K +AA
Sbjct: 829 EEEERRKQEELLRKQEEEAA 848
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 33.9 bits (76), Expect = 0.058
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 58 KHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117
+ K+ + EE+ +++ A++ QR +A R Q+ E + Q+E+A+R +E ++
Sbjct: 776 ERKRREEEELARRKQEEALRRQRE-------QEIALRRQREEEERQQQEEALRRLEERRR 828
Query: 118 AKQASKKTAMAAAKAPTKAA 137
++ +K K +AA
Sbjct: 829 EEEERRKQEELLRKQEEEAA 848
>gi|222136585 timeless homolog [Homo sapiens]
Length = 1208
Score = 33.9 bits (76), Expect = 0.058
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 44 RNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKA 103
R P +++ T L R Q EE QK + K + ++ E K
Sbjct: 1081 RIPAKLSPTQLRRAAASLSQPEEEQKLQPELQPK------------VPGEQGSDEEHCKE 1128
Query: 104 QREQAIRAAKEA--KKAKQASKKTAMAAAKAPTKAAPKQK 141
R QA+RA A KKA AS + A K P KAAPK++
Sbjct: 1129 HRAQALRALLLAHKKKAGLASPEEEDAVGKEPLKAAPKKR 1168
>gi|20357552 cortactin isoform a [Homo sapiens]
Length = 550
Score = 33.9 bits (76), Expect = 0.058
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSA 150
+AK ++ + RKA+ E+A R AKE ++ ++A +K A+A T+ P +P +
Sbjct: 357 LAKEKEQEDRRKAEAERAQRMAKERQEQEEARRKLE-EQARAKTQTPPVSPAPQPTEERL 415
Query: 151 P 151
P
Sbjct: 416 P 416
>gi|20357556 cortactin isoform b [Homo sapiens]
Length = 513
Score = 33.9 bits (76), Expect = 0.058
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSA 150
+AK ++ + RKA+ E+A R AKE ++ ++A +K A+A T+ P +P +
Sbjct: 320 LAKEKEQEDRRKAEAERAQRMAKERQEQEEARRKLE-EQARAKTQTPPVSPAPQPTEERL 378
Query: 151 P 151
P
Sbjct: 379 P 379
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 33.1 bits (74), Expect = 0.100
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 19/118 (16%)
Query: 55 YRRKHKKGQSEE-IQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAK 113
Y +H + +S + + R+R + +T S + A+ N+ + R A+ +A AAK
Sbjct: 415 YSSRHSRSRSRHRLSRSRSRHSSISPSTLTLKS--SLAAELNKNKKARAAEAARAAEAAK 472
Query: 114 --EAKKAKQASKKTAMAA-AKAPTK------AAPKQ----KIVKPVKVS---APRVGG 155
EA KA +A+ K A A+ PTK A+ Q K VK +K+ +P GG
Sbjct: 473 AAEATKAAEAAAKAAKASNTSTPTKGNTETSASASQTNHVKDVKKIKIEHAPSPSSGG 530
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 33.1 bits (74), Expect = 0.100
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 19/118 (16%)
Query: 55 YRRKHKKGQSEE-IQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAK 113
Y +H + +S + + R+R + +T S + A+ N+ + R A+ +A AAK
Sbjct: 415 YSSRHSRSRSRHRLSRSRSRHSSISPSTLTLKS--SLAAELNKNKKARAAEAARAAEAAK 472
Query: 114 --EAKKAKQASKKTAMAA-AKAPTK------AAPKQ----KIVKPVKVS---APRVGG 155
EA KA +A+ K A A+ PTK A+ Q K VK +K+ +P GG
Sbjct: 473 AAEATKAAEAAAKAAKASNTSTPTKGNTETSASASQTNHVKDVKKIKIEHAPSPSSGG 530
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 33.1 bits (74), Expect = 0.100
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 23/101 (22%)
Query: 58 KHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRK-AQREQAIRAAKE-- 114
+ K+G+ ++ +KK T K+ +K +++K +++E AI K+
Sbjct: 310 EEKEGEKKKAEKKVTSET-----------------KKKEKEDIKKKSEKETAIDVEKKEP 352
Query: 115 --AKKAKQASKK-TAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
A + KQ + K A AAAK K +K KP +V P+
Sbjct: 353 GKASETKQGTVKIAAQAAAKKDEKKEDSKKTKKPAEVEQPK 393
Score = 26.9 bits (58), Expect = 7.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 93 KRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKI 142
K K ++ K ++ + AKE KKAK A K + K K ++K+
Sbjct: 183 KATHKEKIEKKEKPETKTLAKEQKKAKTAEK--SEEKTKKEVKGGKQEKV 230
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 32.7 bits (73), Expect = 0.13
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 56 RRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQRE---QAIRAA 112
+ K KK + +++ T + + Q A A + K +Q E + ++E A A
Sbjct: 20 KEKDKKAEGAATEEEGTPKESEPQAAAEPAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAK 79
Query: 113 KEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGK 156
+EA KA + K A AKA AP+Q+ P P GG+
Sbjct: 80 EEAPKA-EPEKTEGAAEAKAEPPKAPEQEQAAP----GPAAGGE 118
>gi|102467235 inner centromere protein antigens 135/155kDa isoform 1
[Homo sapiens]
Length = 918
Score = 32.3 bits (72), Expect = 0.17
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 54 LYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKP-EVRKAQREQAIRAA 112
L R+K ++ + +++ + +R + ++ + + M + +K E + AQ ++ A
Sbjct: 554 LRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKFAQIDEKTEKA 613
Query: 113 KEAKKAKQASKKTAMAAAKAPTKAAPKQK 141
KE + A++ +KK A A +A KQ+
Sbjct: 614 KEERLAEEKAKKKAAAKKMEEVEARRKQE 642
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.127 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,272,938
Number of Sequences: 37866
Number of extensions: 185550
Number of successful extensions: 1562
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 354
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.