Guide to the Human Genome
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Name: LOC100129162 Sequence: fasta or formatted (184aa) NCBI GI: 169164029
Description:

PREDICTED: similar to hCG1644578

Referenced in:

Ribosomes

Other entries for this name:
alt prot [184aa] PREDICTED: similar to hCG1644578
alt prot [161aa] PREDICTED: similar to hCG1644578
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         11           2
 C cysteine            5.4         10           1
 D aspartate           2.2          4           1
 E glutamate           4.9          9           1
 F phenylalanine       6.0         11           1
 G glycine             4.9          9           1
 H histidine           2.7          5           2
 I isoleucine          5.4         10           2
 K lysine             12.5         23           3
 L leucine             6.0         11           2
 M methionine          3.3          6           2
 N asparagine          7.6         14           2
 P proline             3.8          7           1
 Q glutamine           1.1          2           1
 R arginine            3.8          7           1
 S serine              8.2         15           2
 T threonine           4.9          9           2
 V valine              5.4         10           2
 W tryptophan          2.2          4           1
 Y tyrosine            3.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1644578 
LOC100129162          0.995   PREDICTED: similar to hCG1644578 
LOC100129162          0.381   PREDICTED: similar to hCG1644578 
RSL24D1               0.302   ribosomal protein L24-like 
PSAT1                 0.270   phosphoserine aminotransferase 1 isoform 1 
PSAT1                 0.270   phosphoserine aminotransferase 1 isoform 2 
LOC284288             0.262   PREDICTED: similar to ribosomal protein L24-like [H...
LOC284288             0.262   PREDICTED: similar to ribosomal protein L24-like [Ho...
LOC284288             0.262   PREDICTED: similar to ribosomal protein L24-like [Ho...
RPL24                 0.082   ribosomal protein L24 
ETAA1                 0.011   ETAA16 protein 
DNAH2                 0.008   dynein heavy chain domain 3 
ELMO1                 0.005   engulfment and cell motility 1 isoform 1 
RABGAP1               0.005   RAB GTPase activating protein 1 
ZNF267                0.005   zinc finger protein 267 
ZNF607                0.005   zinc finger protein 607 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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