Guide to the Human Genome
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Search of human proteins with 4506613

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506613 ribosomal protein L22 proprotein [Homo sapiens]
         (128 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506613 ribosomal protein L22 proprotein [Homo sapiens]            257   2e-69
gi|153791384 ribosomal protein L22-like 1 [Homo sapiens]              175   8e-45
gi|212549536 regulator of G-protein signaling like 1 [Homo sapiens]    33   0.046
gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens]                     30   0.39 
gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens]                     30   0.39 
gi|32455252 phosphoinositide-3-kinase, regulatory subunit 1 (alp...    27   3.3  
gi|32455250 phosphoinositide-3-kinase, regulatory subunit 1 (alp...    27   3.3  
gi|32455248 phosphoinositide-3-kinase, regulatory subunit 1 (alp...    27   3.3  
gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is...    27   3.3  
gi|156142197 euchromatic histone-lysine N-methyltransferase 2 is...    27   3.3  
gi|16507200 ubiquitin specific protease 28 [Homo sapiens]              27   3.3  
gi|21359969 polymerase (RNA) III (DNA directed) polypeptide C (6...    27   3.3  
gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Ho...    27   4.4  
gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Ho...    27   4.4  
gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta...    27   5.7  
gi|4557565 excision repair cross-complementing rodent repair def...    27   5.7  
gi|54607116 leiomodin 3 (fetal) [Homo sapiens]                         27   5.7  
gi|51173735 ras responsive element binding protein 1 isoform 2 [...    26   7.4  
gi|51173737 ras responsive element binding protein 1 isoform 1 [...    26   7.4  
gi|4503257 death-domain associated protein isoform a [Homo sapiens]    26   9.7  
gi|215422388 death-domain associated protein isoform a [Homo sap...    26   9.7  
gi|215422366 death-domain associated protein isoform b [Homo sap...    26   9.7  
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s...    26   9.7  
gi|134304838 eukaryotic translation initiation factor 2-alpha ki...    26   9.7  
gi|118150660 erythropoietin 4 immediate early response [Homo sap...    26   9.7  
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap...    26   9.7  
gi|23308693 zinc finger and BTB domain containing 9 [Homo sapiens]     26   9.7  

>gi|4506613 ribosomal protein L22 proprotein [Homo sapiens]
          Length = 128

 Score =  257 bits (657), Expect = 2e-69
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAPVKKLVVKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGV 60
           MAPVKKLVVKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGV
Sbjct: 1   MAPVKKLVVKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGV 60

Query: 61  VTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQD 120
           VTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQD
Sbjct: 61  VTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQD 120

Query: 121 EEEEEDED 128
           EEEEEDED
Sbjct: 121 EEEEEDED 128


>gi|153791384 ribosomal protein L22-like 1 [Homo sapiens]
          Length = 122

 Score =  175 bits (444), Expect = 8e-45
 Identities = 87/119 (73%), Positives = 98/119 (82%), Gaps = 1/119 (0%)

Query: 10  KGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSK 69
           K  K K+   +F LD THPVEDGI D+ NFEQFL+E++KVNGK GNLG  VV IER K+K
Sbjct: 5   KDRKPKRSTWRFNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGN-VVHIERFKNK 63

Query: 70  ITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED 128
           ITV SE  FSKRYLKYLTKKYLKKNNLRDWLRVVA+ KE+YELRYFQI+QDE+E E ED
Sbjct: 64  ITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDEDESESED 122


>gi|212549536 regulator of G-protein signaling like 1 [Homo sapiens]
          Length = 1076

 Score = 33.5 bits (75), Expect = 0.046
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 69  KITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDE 127
           ++ V SEV  S R    +   YL+++  + W+R+++  +   + R F +N  + +E ++
Sbjct: 762 EVEVQSEVQISSRKPSKIVSTYLQESQKKGWMRMISFIRSFCKYRRFMLNPSKRQEFED 820


>gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens]
          Length = 981

 Score = 30.4 bits (67), Expect = 0.39
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 93  KNNLRDW----LRVVANSKESYELRYFQINQDEEEEEDE 127
           K N  DW    L +  N  E+YE ++    ++EEEEE+E
Sbjct: 897 KENEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEEEE 935


>gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens]
          Length = 971

 Score = 30.4 bits (67), Expect = 0.39
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 93  KNNLRDW----LRVVANSKESYELRYFQINQDEEEEEDE 127
           K N  DW    L +  N  E+YE ++    ++EEEEE+E
Sbjct: 887 KENEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEEEE 925


>gi|32455252 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
           isoform 2 [Homo sapiens]
          Length = 454

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 81  RYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEE 122
           +YL +LT+K +++  L +WL       E+ E +Y  +  DE+
Sbjct: 309 QYLMWLTQKGVRQKKLNEWL-----GNENTEDQYSLVEDDED 345


>gi|32455250 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
           isoform 3 [Homo sapiens]
          Length = 424

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 81  RYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEE 122
           +YL +LT+K +++  L +WL       E+ E +Y  +  DE+
Sbjct: 279 QYLMWLTQKGVRQKKLNEWL-----GNENTEDQYSLVEDDED 315


>gi|32455248 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
           isoform 1 [Homo sapiens]
          Length = 724

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 81  RYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEE 122
           +YL +LT+K +++  L +WL       E+ E +Y  +  DE+
Sbjct: 579 QYLMWLTQKGVRQKKLNEWL-----GNENTEDQYSLVEDDED 615


>gi|156142199 euchromatic histone-lysine N-methyltransferase 2
           isoform b [Homo sapiens]
          Length = 1176

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 101 RVVANSKESYELRYFQINQDEEEEEDED 128
           RV ++SK   E    Q++++EEEEE+E+
Sbjct: 282 RVDSDSKSEVEALTEQLSEEEEEEEEEE 309


>gi|156142197 euchromatic histone-lysine N-methyltransferase 2
           isoform a [Homo sapiens]
          Length = 1210

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 101 RVVANSKESYELRYFQINQDEEEEEDED 128
           RV ++SK   E    Q++++EEEEE+E+
Sbjct: 282 RVDSDSKSEVEALTEQLSEEEEEEEEEE 309


>gi|16507200 ubiquitin specific protease 28 [Homo sapiens]
          Length = 1077

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 9   VKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKS 68
           V+G    K+VL   +D TH  +D +  A         +I+ +G+  N      + E  +S
Sbjct: 78  VEGSAANKEVLAKVIDLTHDNKDDLQAAIALSLLESPKIQADGRDLNRMHEATSAETKRS 137

Query: 69  K 69
           K
Sbjct: 138 K 138


>gi|21359969 polymerase (RNA) III (DNA directed) polypeptide C
           (62kD) [Homo sapiens]
          Length = 534

 Score = 27.3 bits (59), Expect = 3.3
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 13/81 (16%)

Query: 51  GKAGNLGGGVVTIERSK---SKITVTSEVPFSKR--------YLKYLTKKYLKKNNLRDW 99
           GK+G+ GGG+  I   K   S  T T E    +R        +   L KK++++  + D+
Sbjct: 324 GKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKHIEQKQVEDF 383

Query: 100 LRVVANSKESYELRYFQINQD 120
             + A  KE+ ++ Y  ++++
Sbjct: 384 AMIPA--KEAKDMLYKMLSEN 402


>gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
           sapiens]
          Length = 880

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 32  GIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYL 91
           GI DAA   ++L+ +++  G+     G + T +  K     T  +P ++ Y       Y 
Sbjct: 242 GIGDAAEARRWLRTKLQAVGEKAGFPGVLDTAKPGKLH---TIPIPVARCYT------YS 292

Query: 92  KKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED 128
              +  D L+ +   KE   L+   +  DEEEEE+E+
Sbjct: 293 WSQDSFDILQEIL-LKEQELLQPGILGDDEEEEEEEE 328


>gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
           sapiens]
          Length = 880

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 32  GIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYL 91
           GI DAA   ++L+ +++  G+     G + T +  K     T  +P ++ Y       Y 
Sbjct: 242 GIGDAAEARRWLRTKLQAVGEKAGFPGVLDTAKPGKLH---TIPIPVARCYT------YS 292

Query: 92  KKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED 128
              +  D L+ +   KE   L+   +  DEEEEE+E+
Sbjct: 293 WSQDSFDILQEIL-LKEQELLQPGILGDDEEEEEEEE 328


>gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta)
           [Homo sapiens]
          Length = 728

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 11/44 (25%), Positives = 24/44 (54%)

Query: 81  RYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEE 124
           +YL +LT+K  ++  + +WL +   +++ Y L   + +    EE
Sbjct: 576 QYLVWLTQKGARQKKINEWLGIKNETEDQYALMEDEDDLPHHEE 619


>gi|4557565 excision repair cross-complementing rodent repair
           deficiency, complementation group 6 [Homo sapiens]
          Length = 1493

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 28/121 (23%)

Query: 35  DAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFS--------------- 79
           +A+ FE++L ++ K++ +    G       ++ + +T  + V                  
Sbjct: 267 EASGFEKYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQNKNKPNKKARVLSKKEE 326

Query: 80  --KRYLKYLTKKYLKKNNL-------RDW---LRVVANS-KESYELRYFQINQDEEEEED 126
             K+++K L K+ L+           R W   +R  A    E  E  YF   ++EEEE+D
Sbjct: 327 RLKKHIKKLQKRALQFQGKVGLPKARRPWESDMRPEAEGDSEGEESEYFPTEEEEEEEDD 386

Query: 127 E 127
           E
Sbjct: 387 E 387


>gi|54607116 leiomodin 3 (fetal) [Homo sapiens]
          Length = 560

 Score = 26.6 bits (57), Expect = 5.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)

Query: 79  SKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED 128
           +K   +YL +K    NN      +VAN +ES      Q   +E+EEE++D
Sbjct: 112 NKNMAQYLKEKL---NN-----EIVANKRESKGSSNIQETDEEDEEEEDD 153


>gi|51173735 ras responsive element binding protein 1 isoform 2
           [Homo sapiens]
          Length = 1687

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 22  TLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKR 81
           TL C  P + G  +  +   F         +A +LGG +  +  +K  I   S  PF K 
Sbjct: 395 TLKCQLPQDPGCTNLLSLSPF---------EAASLGGSLTVLPATKDSIKHLSLQPFQKG 445

Query: 82  YL 83
           ++
Sbjct: 446 FI 447


>gi|51173737 ras responsive element binding protein 1 isoform 1
           [Homo sapiens]
          Length = 1742

 Score = 26.2 bits (56), Expect = 7.4
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 22  TLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKR 81
           TL C  P + G  +  +   F         +A +LGG +  +  +K  I   S  PF K 
Sbjct: 395 TLKCQLPQDPGCTNLLSLSPF---------EAASLGGSLTVLPATKDSIKHLSLQPFQKG 445

Query: 82  YL 83
           ++
Sbjct: 446 FI 447


>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
          Length = 740

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 105 NSKESYELRYFQINQDEEEEEDED 128
           +S+E  +L   Q  Q+++EEEDE+
Sbjct: 460 DSEEEEDLEQMQEGQEDDEEEDEE 483


>gi|215422388 death-domain associated protein isoform a [Homo
           sapiens]
          Length = 740

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 105 NSKESYELRYFQINQDEEEEEDED 128
           +S+E  +L   Q  Q+++EEEDE+
Sbjct: 460 DSEEEEDLEQMQEGQEDDEEEDEE 483


>gi|215422366 death-domain associated protein isoform b [Homo
           sapiens]
          Length = 752

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 105 NSKESYELRYFQINQDEEEEEDED 128
           +S+E  +L   Q  Q+++EEEDE+
Sbjct: 472 DSEEEEDLEQMQEGQEDDEEEDEE 495


>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
           sapiens]
          Length = 940

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 61  VTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELR 113
           +T  ++ + I +  ++  + ++L  LT  +LK+NN    ++ ++ S E  ELR
Sbjct: 79  LTYSKTTNNIPLLQQILLTLQHLP-LTVDHLKQNNTAKLVKQLSKSSEDEELR 130


>gi|134304838 eukaryotic translation initiation factor 2-alpha
           kinase 3 [Homo sapiens]
          Length = 1116

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 62  TIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWL 100
           T+    +K T     P S +   Y+  +  +K NL+DW+
Sbjct: 862 TLSLDLTKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWM 900


>gi|118150660 erythropoietin 4 immediate early response [Homo
           sapiens]
          Length = 426

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 12/76 (15%)

Query: 63  IERSKS-------KITVTSEVPFSKRYLKYLTKKY-----LKKNNLRDWLRVVANSKESY 110
           IER +S       KIT+ S + + KR  +    K       +K + +    +V + +E +
Sbjct: 236 IERERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVF 295

Query: 111 ELRYFQINQDEEEEED 126
           E R   +N D+EE +D
Sbjct: 296 EFRPELVNDDDEEADD 311


>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
           sapiens]
          Length = 1189

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 19/97 (19%)

Query: 29  VEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTK 88
           +EDG +D A FE+  ++  K N K                     SE  + K   K+  +
Sbjct: 16  LEDGEIDDAGFEEIQEKEAKENEKQ-------------------KSEKAYRKSRKKHKKE 56

Query: 89  KYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEE 125
           +  KK+  R   +   NS  S +   + ++ D E  E
Sbjct: 57  REKKKSKRRKREKHKHNSPSSDDSSDYSLDSDVEHTE 93


>gi|23308693 zinc finger and BTB domain containing 9 [Homo sapiens]
          Length = 473

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 102 VVANSKESYELRYFQINQDEEEEEDED 128
           V     E  E+   Q+ ++EEEEED+D
Sbjct: 196 VGGEGSELGEVLQIQVEEEEEEEEDDD 222


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,574,309
Number of Sequences: 37866
Number of extensions: 176278
Number of successful extensions: 1006
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 37
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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