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Search of human proteins with 4506583
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506583 replication protein A1, 70kDa [Homo sapiens]
(616 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506583 replication protein A1, 70kDa [Homo sapiens] 1229 0.0
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 37 0.054
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 36 0.12
gi|37577097 dystrobrevin, beta isoform 5 [Homo sapiens] 34 0.35
gi|210032580 SET domain containing 1B [Homo sapiens] 34 0.45
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 33 0.59
gi|239755587 PREDICTED: hypothetical protein [Homo sapiens] 33 0.59
gi|239744407 PREDICTED: hypothetical protein XP_002343137 [Homo ... 33 0.59
gi|153792393 G protein-coupled receptor 137C [Homo sapiens] 33 0.59
gi|209915594 transcription factor 3 isoform E47 [Homo sapiens] 33 0.59
gi|27777636 transcription factor 3 isoform E12 [Homo sapiens] 33 0.59
gi|112421108 capicua homolog [Homo sapiens] 33 0.59
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 33 0.77
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 33 0.77
gi|7662010 zinc finger protein 516 [Homo sapiens] 33 0.77
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 33 0.77
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 32 1.7
gi|169172087 PREDICTED: hypothetical protein [Homo sapiens] 32 1.7
gi|113419362 PREDICTED: hypothetical protein [Homo sapiens] 32 1.7
gi|113418886 PREDICTED: hypothetical protein [Homo sapiens] 32 1.7
gi|113419893 PREDICTED: hypothetical protein [Homo sapiens] 32 1.7
gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens] 32 1.7
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 32 2.3
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 32 2.3
gi|15147341 dystrobrevin, beta isoform 3 [Homo sapiens] 32 2.3
gi|37577099 dystrobrevin, beta isoform 2 [Homo sapiens] 32 2.3
gi|4507161 SRY-box 11 [Homo sapiens] 32 2.3
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 31 2.9
gi|11276069 dystrobrevin, beta isoform 1 [Homo sapiens] 31 2.9
gi|37577095 dystrobrevin, beta isoform 4 [Homo sapiens] 31 2.9
>gi|4506583 replication protein A1, 70kDa [Homo sapiens]
Length = 616
Score = 1229 bits (3181), Expect = 0.0
Identities = 616/616 (100%), Positives = 616/616 (100%)
Query: 1 MVGQLSEGAIAAIMQKGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT 60
MVGQLSEGAIAAIMQKGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
Sbjct: 1 MVGQLSEGAIAAIMQKGDTNIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT 60
Query: 61 QLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKSAEAVGVKIGNPVPYNE 120
QLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKSAEAVGVKIGNPVPYNE
Sbjct: 61 QLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKSAEAVGVKIGNPVPYNE 120
Query: 121 GLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGT 180
GLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGT
Sbjct: 121 GLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGT 180
Query: 181 QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNE 240
QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNE
Sbjct: 181 QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNE 240
Query: 241 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQF 300
QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQF
Sbjct: 241 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQF 300
Query: 301 DFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL 360
DFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL
Sbjct: 301 DFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL 360
Query: 361 WGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ 420
WGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ
Sbjct: 361 WGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ 420
Query: 421 ALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA 480
ALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA
Sbjct: 421 ALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQA 480
Query: 481 CPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL 540
CPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
Sbjct: 481 CPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL 540
Query: 541 GQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYR 600
GQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYR
Sbjct: 541 GQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYR 600
Query: 601 EYGRRLVMSIRRSALM 616
EYGRRLVMSIRRSALM
Sbjct: 601 EYGRRLVMSIRRSALM 616
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 37.0 bits (84), Expect = 0.054
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 109 GVKIGNPVPYNEGLGQPQVA------PPAPAASPAASSRPQPQNGSSGMGSTVSKAYGAS 162
G G+PV +GL P+ + PP P+ASP++S +P P + G + A +
Sbjct: 992 GAPSGHPVGSLDGLLSPEASSPYPPLPPRPSASPSSSLQPPPPPPAPGELYRLPPASAVA 1051
Query: 163 KTFGKAAGPSLSHTSG 178
G A SLS +G
Sbjct: 1052 TAQGPGAASSLSSDTG 1067
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 35.8 bits (81), Expect = 0.12
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 103 KSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGAS 162
K++ A G P PY + VAPPAP+ RP P SG G S G+S
Sbjct: 356 KASPAPSHNSGTPAPYAQA-----VAPPAPSGPSTTQPRP-PSVQPSGGGGGGSGGGGSS 409
Query: 163 KTFGKAAGPSLSHTSGGT 180
+ +AG +G T
Sbjct: 410 SSSNSSAGGGAGKQNGAT 427
>gi|37577097 dystrobrevin, beta isoform 5 [Homo sapiens]
Length = 560
Score = 34.3 bits (77), Expect = 0.35
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 84 VNTLKDGRR--VVILMELEVLKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSR 141
++ L++ RR +V L EL L A+A G +P G G+P P P S +A S
Sbjct: 466 MSALQESRRELMVQLEELMKLLKAQATGSPHTSPT---HGGGRPM---PMPVRSTSAGST 519
Query: 142 PQ--PQNGSSGMGSTVSKAYGASK 163
P PQ+ SG+G V +A+ ++
Sbjct: 520 PTHCPQDSLSGVGGDVQEAFAQAE 543
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 33.9 bits (76), Expect = 0.45
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 103 KSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGAS 162
+S E V G P + G ++ P SP + P P S G+ T + + +
Sbjct: 1331 QSTETVPATPGGEPPLSGGSSGLSLSSPQVPGSPFSYPAPSPSLSSGGLPRTPGRDFSFT 1390
Query: 163 KTFGKAAGPSL 173
TF + +GP L
Sbjct: 1391 PTFSEPSGPLL 1401
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 33.5 bits (75), Expect = 0.59
Identities = 33/84 (39%), Positives = 36/84 (42%), Gaps = 20/84 (23%)
Query: 116 VPYNEGLGQPQVAPPAPA-ASPAASS-----------RPQ------PQNGSSGMGSTVSK 157
VP + LGQPQ APPAPA ASP S RP+ P + S S VS
Sbjct: 7072 VPSSPFLGQPQ-APPAPAKASPPLDSKMGPGDISLPGRPKPGPCSSPGSASQASSSQVSS 7130
Query: 158 AYGASKTFGKAAGPSLSHTSGGTQ 181
S G GPSL G TQ
Sbjct: 7131 LRVGSSQVGTEPGPSLD-AEGWTQ 7153
>gi|239755587 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 33.5 bits (75), Expect = 0.59
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 11/111 (9%)
Query: 123 GQPQVAPPAPAAS-PAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGTQ 181
GQ PP P S P + R P +G M + GA GPS + TS G++
Sbjct: 85 GQAAPPPPLPVDSGPETTLRGSP-SGPWRMAGVKKRPTGA--------GPSTA-TSQGSR 134
Query: 182 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGE 232
V AS + KWT C + S + +R +G E ES +
Sbjct: 135 CSVAGTASRNVAERKWTRCLSMAASSPLSILPPTRRQGSRADTEAGAESAQ 185
>gi|239744407 PREDICTED: hypothetical protein XP_002343137 [Homo
sapiens]
Length = 211
Score = 33.5 bits (75), Expect = 0.59
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 11/111 (9%)
Query: 123 GQPQVAPPAPAAS-PAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGTQ 181
GQ PP P S P + R P +G M + GA GPS + TS G++
Sbjct: 85 GQAAPPPPLPVDSGPETTLRGSP-SGPWRMAGVKKRPTGA--------GPSTA-TSQGSR 134
Query: 182 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGE 232
V AS + KWT C + S + +R +G E ES +
Sbjct: 135 CSVAGTASRNVAERKWTRCLSMAASSPLSILPPTRRQGSRADTEAGAESAQ 185
>gi|153792393 G protein-coupled receptor 137C [Homo sapiens]
Length = 429
Score = 33.5 bits (75), Expect = 0.59
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 127 VAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGAS 162
V PA AA+PAA P G SG G V+ A GA+
Sbjct: 5 VPGPAAAAAPAAGREPSTPGGGSGGGGAVAAASGAA 40
>gi|209915594 transcription factor 3 isoform E47 [Homo sapiens]
Length = 651
Score = 33.5 bits (75), Expect = 0.59
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 115 PVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLS 174
P+P G G+P A A A + +P +GS G G S ++ S+TF + + S
Sbjct: 27 PLPVTNGKGRP--ASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTES 84
Query: 175 HTS 177
H+S
Sbjct: 85 HSS 87
>gi|27777636 transcription factor 3 isoform E12 [Homo sapiens]
Length = 654
Score = 33.5 bits (75), Expect = 0.59
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 115 PVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLS 174
P+P G G+P A A A + +P +GS G G S ++ S+TF + + S
Sbjct: 27 PLPVTNGKGRP--ASLAGAQFGGSGLEDRPSSGSWGSGDQSSSSFDPSRTFSEGTHFTES 84
Query: 175 HTS 177
H+S
Sbjct: 85 HSS 87
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 33.5 bits (75), Expect = 0.59
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 115 PVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLS 174
PV + +G G AP + A+SPA+SS + S G G+ ++ G T G P
Sbjct: 521 PVAFGKGYGS---APSSSASSPASSSASAATSFSLGSGTFKAQESGQGSTAGPLRPPPPG 577
Query: 175 HTSGGTQSKVVPIASLTP 192
T SK + P
Sbjct: 578 AGGPATPSKATRFLPMDP 595
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 33.1 bits (74), Expect = 0.77
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 122 LGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGT 180
L P+ P A+ AA S+P P + +S S+ S A + FG G S GGT
Sbjct: 231 LSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFA---QQRFGAMGGGGPSAAGGGT 286
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 33.1 bits (74), Expect = 0.77
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 122 LGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGT 180
L P+ P A+ AA S+P P + +S S+ S A + FG G S GGT
Sbjct: 231 LSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFA---QQRFGAMGGGGPSAAGGGT 286
>gi|7662010 zinc finger protein 516 [Homo sapiens]
Length = 1163
Score = 33.1 bits (74), Expect = 0.77
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 8/145 (5%)
Query: 25 LQVINIRPITTGNSPP----RYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIH 80
LQ +N+RP G+S P R+ D +N+ ++ LAT+ E L +
Sbjct: 384 LQCLNLRPSAAGDSCPGTQAGRRVAELDPVNSYQAWQLATRGKVAEPAEYLKYGAWDEAL 443
Query: 81 RFIVNTLKDGRRVVILMELEVLKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASS 140
V KD RR +L+ E K + G P G G P PA P +++
Sbjct: 444 AGDVAFDKD-RREYVLVSQEKRKREQDAPAAQGPPRKRASGPGDP---APAGHLDPRSAA 499
Query: 141 RPQPQNGSSGMGSTVSKAYGASKTF 165
RP + ++ S+ + K F
Sbjct: 500 RPNRRAAATTGQGKSSECFECGKIF 524
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 33.1 bits (74), Expect = 0.77
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 124 QPQVAPPAPAASPAASS-RPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSLSHTSGGTQS 182
QP +P APA SP+ +P P+ S+ +S + G + G + + T G Q
Sbjct: 563 QPLDSPAAPALSPSGLGLQPGPERTSTTKSKELSPGSAQKGSPGSSQGTACAGTQPGAQP 622
Query: 183 KVVPIASLTPYQ 194
P AS +P Q
Sbjct: 623 GAQPGASPSPSQ 634
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 32.0 bits (71), Expect = 1.7
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 103 KSAEAVGVKIGNPVPYNEG------------------LGQPQVAPPAPAASPAASSRPQP 144
+ E+V K+G P P EG G PQ PP P R Q
Sbjct: 148 RELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQ--PPPPRGWRGKGVRAQQ 205
Query: 145 QNGSSGMGSTVS-KAYGASKTFGKAAGPSLSHTSGG 179
+ GS G G++ S + A KT G + S S +GG
Sbjct: 206 RGGSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAGG 241
>gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 32.0 bits (71), Expect = 1.7
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 121 GLGQPQVAPPAPAASPAASSRPQPQN-GSSGMGSTVSKAYG--ASKTFGKAAGPSL 173
G G+ +A P P SPAA+ P P++ G SG+G ++ A + G GP L
Sbjct: 138 GAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVLSGLLVGAGVGPRL 193
>gi|113419362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 32.0 bits (71), Expect = 1.7
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 121 GLGQPQVAPPAPAASPAASSRPQPQN-GSSGMGSTVSKAYG--ASKTFGKAAGPSL 173
G G+ +A P P SPAA+ P P++ G SG+G ++ A + G GP L
Sbjct: 108 GAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVLSGLLVGAGVGPRL 163
>gi|113418886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 32.0 bits (71), Expect = 1.7
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 121 GLGQPQVAPPAPAASPAASSRPQPQN-GSSGMGSTVSKAYG--ASKTFGKAAGPSL 173
G G+ +A P P SPAA+ P P++ G SG+G ++ A + G GP L
Sbjct: 108 GAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVLSGLLVGAGVGPRL 163
>gi|113419893 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 32.0 bits (71), Expect = 1.7
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 121 GLGQPQVAPPAPAASPAASSRPQPQN-GSSGMGSTVSKAYG--ASKTFGKAAGPSL 173
G G+ +A P P SPAA+ P P++ G SG+G ++ A + G GP L
Sbjct: 108 GAGRRALATPGPLESPAAAQDPLPRHVGPSGLGWSLEPAARVLSGLLVGAGVGPRL 163
>gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens]
Length = 950
Score = 32.0 bits (71), Expect = 1.7
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 15 QKGDTNIKPILQVINIRPITTGN-SPPRYRLLMSDGLNTLSSF 56
+KG KP+ Q++ + P +GN PP +R LMSD +++ F
Sbjct: 586 EKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDF 628
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 31.6 bits (70), Expect = 2.3
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 125 PQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKA--YGASKTFGKAAGPSLSHTSGGTQS 182
P P+P SPA + P P GS G S S A G A+G TS T S
Sbjct: 133 PPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRAGLTSRDTPS 192
Query: 183 KVVP 186
V P
Sbjct: 193 PVDP 196
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 31.6 bits (70), Expect = 2.3
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 115 PVPYNEGLGQPQVAP-PAPAASPAASSRPQPQNGSSGMGSTVSKAYGASKTFGKAAGPSL 173
P P P P PAPA +PAA+ G G+GS G + + G A P L
Sbjct: 28 PTPAPSPASAPIPTPTPAPAPAPAAAPAGSTGTGGPGVGS------GGAGSGGDPARPGL 81
Query: 174 SHTSGGTQSK 183
S +Q K
Sbjct: 82 SQQQRASQRK 91
>gi|15147341 dystrobrevin, beta isoform 3 [Homo sapiens]
Length = 567
Score = 31.6 bits (70), Expect = 2.3
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 95 ILMELEVLKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQ--PQNGSSGMG 152
+L E E ++A+A G +P G G+P P P S +A S P PQ+ SG+G
Sbjct: 486 LLKEEEQKQAAQATGSPHTSPT---HGGGRPM---PMPVRSTSAGSTPTHCPQDSLSGVG 539
Query: 153 STVSKAYGASK 163
V +A+ ++
Sbjct: 540 GDVQEAFAQAE 550
>gi|37577099 dystrobrevin, beta isoform 2 [Homo sapiens]
Length = 597
Score = 31.6 bits (70), Expect = 2.3
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 95 ILMELEVLKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQ--PQNGSSGMG 152
+L E E ++A+A G +P G G+P P P S +A S P PQ+ SG+G
Sbjct: 516 LLKEEEQKQAAQATGSPHTSPT---HGGGRPM---PMPVRSTSAGSTPTHCPQDSLSGVG 569
Query: 153 STVSKAYGASK 163
V +A+ ++
Sbjct: 570 GDVQEAFAQAE 580
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 31.6 bits (70), Expect = 2.3
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 87 LKDGRRVVILMELEVLKSAEAVGVKIGNPVPYNEGLGQPQVAPPA-PAASPAASSRPQPQ 145
LKD ++ + E E L+ + + Y + +P+ P P+A P+AS P+
Sbjct: 90 LKDSEKIPFIREAERLR--------LKHMADYPDYKYRPRKKPKMDPSAKPSASQSPEKS 141
Query: 146 -----NGSSGMGSTVSK-AYGASKTFGKAAGPSLSHTSGG 179
GS+G G+ +K + G+SK GK P+ + G
Sbjct: 142 AAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAAAGAKAG 181
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 31.2 bits (69), Expect = 2.9
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 107 AVGVKIGNPVP---YNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGASK 163
AV + G P+P Y+ G A P +A+P+A PQP SS ST + +
Sbjct: 824 AVSTRPG-PLPTTQYSPGPPSGATALPPTSAAPSAQGSPQPSASSSSQFSTSGGPWARER 882
Query: 164 TFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVT 204
G+ P T ++ P SL P +S+ + ++
Sbjct: 883 RAGEEPVPGPM-----TPTQPPPPLSLPPARSESEVLEEIS 918
>gi|11276069 dystrobrevin, beta isoform 1 [Homo sapiens]
Length = 627
Score = 31.2 bits (69), Expect = 2.9
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 95 ILMELEVLKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQ--PQNGSSGMG 152
+L E E ++A+A G +P G G+P P P S +A S P PQ+ SG+G
Sbjct: 516 LLKEEEQKQAAQATGSPHTSPT---HGGGRPM---PMPVRSTSAGSTPTHCPQDSLSGVG 569
Query: 153 STVSKAY 159
V +A+
Sbjct: 570 GDVQEAF 576
>gi|37577095 dystrobrevin, beta isoform 4 [Homo sapiens]
Length = 609
Score = 31.2 bits (69), Expect = 2.9
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 95 ILMELEVLKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQ--PQNGSSGMG 152
+L E E ++A+A G +P G G+P P P S +A S P PQ+ SG+G
Sbjct: 516 LLKEEEQKQAAQATGSPHTSPT---HGGGRPM---PMPVRSTSAGSTPTHCPQDSLSGVG 569
Query: 153 STVSKAY 159
V +A+
Sbjct: 570 GDVQEAF 576
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,382,896
Number of Sequences: 37866
Number of extensions: 1031183
Number of successful extensions: 6669
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 6531
Number of HSP's gapped (non-prelim): 224
length of query: 616
length of database: 18,247,518
effective HSP length: 108
effective length of query: 508
effective length of database: 14,157,990
effective search space: 7192258920
effective search space used: 7192258920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.