Guide to the Human Genome
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Name: PSMB2 Sequence: fasta or formatted (201aa) NCBI GI: 4506195
Description:

proteasome beta 2 subunit

Referenced in:

Proteasome

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         19           3
 C cysteine            1.5          3           1
 D aspartate           6.5         13           2
 E glutamate           5.5         11           2
 F phenylalanine       4.0          8           1
 G glycine             5.5         11           1
 H histidine           2.5          5           1
 I isoleucine          6.0         12           2
 K lysine              5.5         11           1
 L leucine            12.4         25           3
 M methionine          3.0          6           1
 N asparagine          4.5          9           1
 P proline             4.0          8           1
 Q glutamine           3.5          7           1
 R arginine            6.0         12           2
 S serine              5.0         10           1
 T threonine           4.0          8           1
 V valine              5.0         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            6.5         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proteasome beta 2 subunit 
PSMB1                 0.103   proteasome beta 1 subunit 
PSMB4                 0.074   proteasome beta 4 subunit 
PSMB8                 0.066   proteasome beta 8 subunit isoform E2 proprotein [Hom...
PSMB8                 0.066   proteasome beta 8 subunit isoform E1 proprotein [Homo...
PSMB10                0.055   proteasome beta 10 subunit proprotein 
PSMB7                 0.055   proteasome beta 7 subunit proprotein 
PSMB3                 0.050   proteasome beta 3 subunit 
PSMB9                 0.050   proteasome beta 9 subunit isoform 2 proprotein [Homo...
PSMB9                 0.050   proteasome beta 9 subunit isoform 1 proprotein 
PSMB6                 0.047   proteasome beta 6 subunit 
PSMA6                 0.024   proteasome alpha 6 subunit 
PSMA4                 0.021   proteasome alpha 4 subunit isoform 1 
PSMA4                 0.021   proteasome alpha 4 subunit isoform 1 
TNS4                  0.016   tensin 4 
PSMA5                 0.016   proteasome alpha 5 subunit 
PSMA7                 0.013   proteasome alpha 7 subunit 
ABR                   0.011   active breakpoint cluster region-related  protein i...
ABR                   0.011   active breakpoint cluster region-related  protein is...
ABR                   0.011   active breakpoint cluster region-related  protein is...
PSMA8                 0.005   proteasome alpha 8 subunit isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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