Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PSMB4 Sequence: fasta or formatted (264aa) NCBI GI: 22538467
Description:

proteasome beta 4 subunit

Referenced in:

Proteasome

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         22           2
 C cysteine            0.4          1           1
 D aspartate           4.5         12           1
 E glutamate           5.7         15           2
 F phenylalanine       3.4          9           1
 G glycine            10.2         27           2
 H histidine           1.1          3           1
 I isoleucine          4.5         12           1
 K lysine              1.9          5           1
 L leucine             9.1         24           2
 M methionine          4.9         13           1
 N asparagine          3.0          8           2
 P proline             4.9         13           1
 Q glutamine           3.4          9           1
 R arginine            7.2         19           2
 S serine              8.3         22           1
 T threonine           5.3         14           1
 V valine              6.4         17           2
 W tryptophan          1.5          4           1
 Y tyrosine            5.7         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proteasome beta 4 subunit 
PSMB8                 0.059   proteasome beta 8 subunit isoform E2 proprotein [Hom...
PSMB8                 0.059   proteasome beta 8 subunit isoform E1 proprotein [Homo...
PSMB2                 0.055   proteasome beta 2 subunit 
PSMB5                 0.053   proteasome beta 5 subunit isoform 1 
PSMB7                 0.035   proteasome beta 7 subunit proprotein 
PSMB9                 0.030   proteasome beta 9 subunit isoform 2 proprotein [Homo...
PSMB9                 0.030   proteasome beta 9 subunit isoform 1 proprotein 
PSMB6                 0.028   proteasome beta 6 subunit 
PSMB5                 0.026   proteasome beta 5 subunit isoform 3 
PSMB11                0.016   proteasome beta 11 subunit 
PSMB10                0.016   proteasome beta 10 subunit proprotein 
EPPK1                 0.008   epiplakin 1 
NEU4                  0.006   sialidase 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press