Guide to the Human Genome
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Name: PLD1 Sequence: fasta or formatted (1074aa) NCBI GI: 4505873
Description:

phospholipase D1 isoform a

Referenced in:

Acetylcholine
Lipid Metabolism

Other entries for this name:
alt prot [1036aa] phospholipase D1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         61           2
 C cysteine            1.1         12           2
 D aspartate           5.3         57           2
 E glutamate           6.9         74           3
 F phenylalanine       4.9         53           2
 G glycine             5.7         61           3
 H histidine           4.1         44           2
 I isoleucine          7.4         79           2
 K lysine              6.9         74           2
 L leucine             8.5         91           2
 M methionine          2.1         23           1
 N asparagine          4.3         46           1
 P proline             4.3         46           2
 Q glutamine           3.6         39           2
 R arginine            6.7         72           2
 S serine              6.9         74           2
 T threonine           4.1         44           2
 V valine              6.0         64           2
 W tryptophan          1.8         19           2
 Y tyrosine            3.8         41           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phospholipase D1 isoform a 
PLD1                  0.952   phospholipase D1 isoform b 
PLD2                  0.241   phospholipase D2 
ACAP1                 0.005   centaurin beta1 
C13orf26              0.004   hypothetical protein LOC122046 
CAPRIN2               0.004   C1q domain containing 1 isoform 1 
CAPRIN2               0.004   C1q domain containing 1 isoform 2 
NUFIP2                0.004   nuclear fragile X mental retardation protein interac...
FLJ44817              0.003   similar to pleckstrin homology domain protein (5V32...
SBNO2                 0.003   strawberry notch homolog 2 isoform 2 
SBNO2                 0.003   strawberry notch homolog 2 isoform 1 
CCDC73                0.003   sarcoma antigen NY-SAR-79 
SYNE2                 0.003   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.003   spectrin repeat containing, nuclear envelope 2 isof...
LIG3                  0.003   ligase III, DNA, ATP-dependent isoform beta precurso...
LIG3                  0.003   ligase III, DNA, ATP-dependent isoform alpha precurs...
SNX14                 0.002   sorting nexin 14 isoform b 
SNX14                 0.002   sorting nexin 14 isoform a 
CEP250                0.002   centrosomal protein 2 
SNX27                 0.002   sorting nexin family member 27 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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