Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4505471
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505471 nth endonuclease III-like 1 [Homo sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505471 nth endonuclease III-like 1 [Homo sapiens] 637 0.0
gi|115298654 mutY homolog isoform 4 [Homo sapiens] 47 2e-05
gi|115298652 mutY homolog isoform 4 [Homo sapiens] 47 2e-05
gi|115298650 mutY homolog isoform 3 [Homo sapiens] 47 2e-05
gi|115298648 mutY homolog isoform 2 [Homo sapiens] 47 2e-05
gi|6912520 mutY homolog isoform 1 [Homo sapiens] 47 2e-05
gi|190358497 mutY homolog isoform 5 [Homo sapiens] 47 2e-05
gi|224465235 euchromatic histone-lysine N-methyltransferase 1 is... 35 0.066
gi|224465233 euchromatic histone-lysine N-methyltransferase 1 is... 35 0.066
gi|8670532 8-oxoguanine DNA-glycosylase 1 isoform 1c [Homo sapiens] 34 0.15
gi|8670540 8-oxoguanine DNA-glycosylase 1 isoform 2d [Homo sapiens] 33 0.33
gi|8670530 8-oxoguanine DNA-glycosylase 1 isoform 1b [Homo sapiens] 33 0.33
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 33 0.33
gi|222352127 sidekick 2 [Homo sapiens] 32 0.55
gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b ... 32 0.55
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ... 32 0.55
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens] 32 0.72
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ... 32 0.72
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ... 32 0.72
gi|8670534 8-oxoguanine DNA-glycosylase 1 isoform 2a [Homo sapiens] 31 1.6
gi|8670542 8-oxoguanine DNA-glycosylase 1 isoform 2e [Homo sapiens] 31 1.6
gi|4505495 8-oxoguanine DNA-glycosylase 1 isoform 1a [Homo sapiens] 31 1.6
gi|239754748 PREDICTED: hypothetical protein [Homo sapiens] 31 1.6
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 31 1.6
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 31 1.6
gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ... 31 1.6
gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1... 31 1.6
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 30 2.8
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 30 2.8
gi|61966721 Tctex1 domain containing 4 [Homo sapiens] 30 2.8
>gi|4505471 nth endonuclease III-like 1 [Homo sapiens]
Length = 312
Score = 637 bits (1643), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MCSPQESGMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRREAAAEARKSHSPVKRPRK 60
MCSPQESGMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRREAAAEARKSHSPVKRPRK
Sbjct: 1 MCSPQESGMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRREAAAEARKSHSPVKRPRK 60
Query: 61 AQRLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYD 120
AQRLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYD
Sbjct: 61 AQRLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYD 120
Query: 121 SSAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVG 180
SSAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVG
Sbjct: 121 SSAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVG 180
Query: 181 FWRSKVKYIKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDT 240
FWRSKVKYIKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDT
Sbjct: 181 FWRSKVKYIKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDT 240
Query: 241 HVHRIANRLRWTKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHAC 300
HVHRIANRLRWTKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHAC
Sbjct: 241 HVHRIANRLRWTKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHAC 300
Query: 301 LNQALCPAAQGL 312
LNQALCPAAQGL
Sbjct: 301 LNQALCPAAQGL 312
>gi|115298654 mutY homolog isoform 4 [Homo sapiens]
Length = 521
Score = 47.4 bits (111), Expect = 2e-05
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 128 RRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVK 187
R Y V +S ++ QT+ + T+ + + +L +G++ S+ +
Sbjct: 98 RAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYY-SRGR 156
Query: 188 YIKQTSAILQQHYGGDIPASVAELVAL-PGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIA 246
+++ + + + GG +P + L L PGVG A ++A+G +G+ VD +V R+
Sbjct: 157 RLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGV-VDGNVARVL 215
Query: 247 NRLRWTKKATKSPEETRAALEEW-LPRELWH-----EINGLLVGFGQQTCLPVHPRCHAC 300
R+R P T + + W L ++L + N + G C P P C C
Sbjct: 216 CRVR---AIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQC 272
Query: 301 LNQALCPAAQ 310
++LC A Q
Sbjct: 273 PVESLCRARQ 282
>gi|115298652 mutY homolog isoform 4 [Homo sapiens]
Length = 521
Score = 47.4 bits (111), Expect = 2e-05
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 128 RRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVK 187
R Y V +S ++ QT+ + T+ + + +L +G++ S+ +
Sbjct: 98 RAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYY-SRGR 156
Query: 188 YIKQTSAILQQHYGGDIPASVAELVAL-PGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIA 246
+++ + + + GG +P + L L PGVG A ++A+G +G+ VD +V R+
Sbjct: 157 RLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGV-VDGNVARVL 215
Query: 247 NRLRWTKKATKSPEETRAALEEW-LPRELWH-----EINGLLVGFGQQTCLPVHPRCHAC 300
R+R P T + + W L ++L + N + G C P P C C
Sbjct: 216 CRVR---AIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQC 272
Query: 301 LNQALCPAAQ 310
++LC A Q
Sbjct: 273 PVESLCRARQ 282
>gi|115298650 mutY homolog isoform 3 [Homo sapiens]
Length = 522
Score = 47.4 bits (111), Expect = 2e-05
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 128 RRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVK 187
R Y V +S ++ QT+ + T+ + + +L +G++ S+ +
Sbjct: 99 RAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYY-SRGR 157
Query: 188 YIKQTSAILQQHYGGDIPASVAELVAL-PGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIA 246
+++ + + + GG +P + L L PGVG A ++A+G +G+ VD +V R+
Sbjct: 158 RLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGV-VDGNVARVL 216
Query: 247 NRLRWTKKATKSPEETRAALEEW-LPRELWH-----EINGLLVGFGQQTCLPVHPRCHAC 300
R+R P T + + W L ++L + N + G C P P C C
Sbjct: 217 CRVR---AIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQC 273
Query: 301 LNQALCPAAQ 310
++LC A Q
Sbjct: 274 PVESLCRARQ 283
>gi|115298648 mutY homolog isoform 2 [Homo sapiens]
Length = 535
Score = 47.4 bits (111), Expect = 2e-05
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 128 RRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVK 187
R Y V +S ++ QT+ + T+ + + +L +G++ S+ +
Sbjct: 112 RAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYY-SRGR 170
Query: 188 YIKQTSAILQQHYGGDIPASVAELVAL-PGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIA 246
+++ + + + GG +P + L L PGVG A ++A+G +G+ VD +V R+
Sbjct: 171 RLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGV-VDGNVARVL 229
Query: 247 NRLRWTKKATKSPEETRAALEEW-LPRELWH-----EINGLLVGFGQQTCLPVHPRCHAC 300
R+R P T + + W L ++L + N + G C P P C C
Sbjct: 230 CRVR---AIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQC 286
Query: 301 LNQALCPAAQ 310
++LC A Q
Sbjct: 287 PVESLCRARQ 296
>gi|6912520 mutY homolog isoform 1 [Homo sapiens]
Length = 546
Score = 47.4 bits (111), Expect = 2e-05
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 128 RRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVK 187
R Y V +S ++ QT+ + T+ + + +L +G++ S+ +
Sbjct: 123 RAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYY-SRGR 181
Query: 188 YIKQTSAILQQHYGGDIPASVAELVAL-PGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIA 246
+++ + + + GG +P + L L PGVG A ++A+G +G+ VD +V R+
Sbjct: 182 RLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGV-VDGNVARVL 240
Query: 247 NRLRWTKKATKSPEETRAALEEW-LPRELWH-----EINGLLVGFGQQTCLPVHPRCHAC 300
R+R P T + + W L ++L + N + G C P P C C
Sbjct: 241 CRVR---AIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQC 297
Query: 301 LNQALCPAAQ 310
++LC A Q
Sbjct: 298 PVESLCRARQ 307
>gi|190358497 mutY homolog isoform 5 [Homo sapiens]
Length = 549
Score = 47.4 bits (111), Expect = 2e-05
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 128 RRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVK 187
R Y V +S ++ QT+ + T+ + + +L +G++ S+ +
Sbjct: 126 RAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYY-SRGR 184
Query: 188 YIKQTSAILQQHYGGDIPASVAELVAL-PGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIA 246
+++ + + + GG +P + L L PGVG A ++A+G +G+ VD +V R+
Sbjct: 185 RLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGV-VDGNVARVL 243
Query: 247 NRLRWTKKATKSPEETRAALEEW-LPRELWH-----EINGLLVGFGQQTCLPVHPRCHAC 300
R+R P T + + W L ++L + N + G C P P C C
Sbjct: 244 CRVR---AIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQC 300
Query: 301 LNQALCPAAQ 310
++LC A Q
Sbjct: 301 PVESLCRARQ 310
>gi|224465235 euchromatic histone-lysine N-methyltransferase 1
isoform 2 [Homo sapiens]
Length = 808
Score = 35.4 bits (80), Expect = 0.066
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 255 ATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQALC 306
A+K P E R A + P+E EIN + FG+Q LP P H L Q C
Sbjct: 217 ASKDPREVREARDHKEPKE---EINKNISDFGRQQLLPPFPSLHQSLPQNQC 265
>gi|224465233 euchromatic histone-lysine N-methyltransferase 1
isoform 1 [Homo sapiens]
Length = 1298
Score = 35.4 bits (80), Expect = 0.066
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 255 ATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQALC 306
A+K P E R A + P+E EIN + FG+Q LP P H L Q C
Sbjct: 217 ASKDPREVREARDHKEPKE---EINKNISDFGRQQLLPPFPSLHQSLPQNQC 265
>gi|8670532 8-oxoguanine DNA-glycosylase 1 isoform 1c [Homo sapiens]
Length = 410
Score = 34.3 bits (77), Expect = 0.15
Identities = 38/124 (30%), Positives = 49/124 (39%), Gaps = 14/124 (11%)
Query: 194 AILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR-LRW- 251
A LQQ + L LPGVG K+A +A + VD H+ IA R W
Sbjct: 223 AWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWH 282
Query: 252 --TKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRC---HACLNQALC 306
T +A +T L + R LW G G+ Q T P RC C N A+
Sbjct: 283 PTTSQAKGPSPQTNKELGNFF-RSLW----GPYAGWAQAT--PPSYRCCSVPTCANPAML 335
Query: 307 PAAQ 310
+ Q
Sbjct: 336 RSHQ 339
>gi|8670540 8-oxoguanine DNA-glycosylase 1 isoform 2d [Homo sapiens]
Length = 356
Score = 33.1 bits (74), Expect = 0.33
Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 194 AILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR-LRW- 251
A LQQ + L LPGVG K+A +A + VD H+ IA R W
Sbjct: 223 AWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWH 282
Query: 252 --TKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTC 290
T +A +T L + R LW G G+ Q C
Sbjct: 283 PTTSQAKGPSPQTNKELGNFF-RSLW----GPYAGWAQALC 318
>gi|8670530 8-oxoguanine DNA-glycosylase 1 isoform 1b [Homo sapiens]
Length = 324
Score = 33.1 bits (74), Expect = 0.33
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 194 AILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR-LRW- 251
A LQQ + L LPGVG K+A +A + VD H+ IA R W
Sbjct: 223 AWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWH 282
Query: 252 --TKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHP 295
T +A +T L + R LW G G+ Q +P P
Sbjct: 283 PTTSQAKGPSPQTNKELGNFF-RSLW----GPYAGWAQAVSVPRCP 323
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 33.1 bits (74), Expect = 0.33
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 19 RSRSLGPGAGPRGCREEPGPLRRREAAAEARKSHSPVKRPRKAQRLRV-----AYEGSDS 73
R R+ GPG RGC +PGP A SP P A+R R A G DS
Sbjct: 225 RRRASGPGPVIRGCTAQPGPAFPHRATHLDPARLSPESAPGPARRGRASVPGPARRGCDS 284
Query: 74 -----EKGEGAEPLKVP 85
+G + P+ P
Sbjct: 285 APGPARRGRDSAPVSAP 301
Score = 31.6 bits (70), Expect = 0.95
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 19 RSRSLGPGAGPRGCREEPGPLRRREAAAEARKSHSPVKRPRKAQRLRVAYEG 70
R R+ PG RGC PGP RR +A P A+R R + G
Sbjct: 269 RGRASVPGPARRGCDSAPGPARRGRDSAPVSAPRGRDSAPGSARRGRDSAPG 320
>gi|222352127 sidekick 2 [Homo sapiens]
Length = 2172
Score = 32.3 bits (72), Expect = 0.55
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 159 LTVDSILQTDDATLGKLIYPVGFWRSKVKYIKQTSAILQQHYGGDIPASVAELVALPGVG 218
+T+ I + D ATLG +P +++ + S + Q + GDI +++ G
Sbjct: 525 VTIRYIWEKDGATLGTESHP------RIRLDRNGSLHISQTWSGDIGTYTCRVISAGGND 578
Query: 219 PKMAHLAM-AVAWGTVSGIAVDTHVHRIANRLRWTK 253
+ AHL + + +A + V R A L WTK
Sbjct: 579 SRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTK 614
>gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b
[Homo sapiens]
Length = 806
Score = 32.3 bits (72), Expect = 0.55
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 11/127 (8%)
Query: 5 QESGMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRREAAAEARKSHSPVKRPRKAQRL 64
+E G++AL + LG G G + GP+ EAA+E + + + L
Sbjct: 92 EEEGISALDGDQM----ELGEENGAAGAADS-GPMEEEEAASEDENGDDQGFQEGEDE-L 145
Query: 65 RVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYDSSAP 124
EG+ E G G + + P + Q QQQ + K P + AP
Sbjct: 146 GDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAAKEAAGKSSGPTSLFAV-----TVAP 200
Query: 125 PKVRRYQ 131
P R+ Q
Sbjct: 201 PGARQGQ 207
>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
[Homo sapiens]
Length = 825
Score = 32.3 bits (72), Expect = 0.55
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 11/127 (8%)
Query: 5 QESGMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRREAAAEARKSHSPVKRPRKAQRL 64
+E G++AL + LG G G + GP+ EAA+E + + + L
Sbjct: 92 EEEGISALDGDQM----ELGEENGAAGAADS-GPMEEEEAASEDENGDDQGFQEGEDE-L 145
Query: 65 RVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYDSSAP 124
EG+ E G G + + P + Q QQQ + K P + AP
Sbjct: 146 GDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAAKEAAGKSSGPTSLFAV-----TVAP 200
Query: 125 PKVRRYQ 131
P R+ Q
Sbjct: 201 PGARQGQ 207
>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 32.0 bits (71), Expect = 0.72
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 5 QESGMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRREAAAEARK-SHSPVKRPRKAQR 63
+++G A + R TR ++LGP G RG P P R A A +R+ SP P R
Sbjct: 50 EDTGSPAPTIRAHTRRKALGP--GERGPEASPRPAPRARAHAHSRRLPASPTGPPETRAR 107
Query: 64 L 64
L
Sbjct: 108 L 108
>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
Length = 208
Score = 32.0 bits (71), Expect = 0.72
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 5 QESGMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRREAAAEARK-SHSPVKRPRKAQR 63
+++G A + R TR ++LGP G RG P P R A A +R+ SP P R
Sbjct: 50 EDTGSPAPTIRAHTRRKALGP--GERGPEASPRPAPRARAHAHSRRLPASPTGPPETRAR 107
Query: 64 L 64
L
Sbjct: 108 L 108
>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
sapiens]
Length = 208
Score = 32.0 bits (71), Expect = 0.72
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 5 QESGMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRREAAAEARK-SHSPVKRPRKAQR 63
+++G A + R TR ++LGP G RG P P R A A +R+ SP P R
Sbjct: 50 EDTGSPAPTIRAHTRRKALGP--GERGPEASPRPAPRARAHAHSRRLPASPTGPPETRAR 107
Query: 64 L 64
L
Sbjct: 108 L 108
>gi|8670534 8-oxoguanine DNA-glycosylase 1 isoform 2a [Homo sapiens]
Length = 424
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 194 AILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR-LRW- 251
A LQQ + L LPGVG K+A +A + VD H+ IA R W
Sbjct: 223 AWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWH 282
Query: 252 --TKKATKSPEETRAALEEWLPRELW 275
T +A +T L + R LW
Sbjct: 283 PTTSQAKGPSPQTNKELGNFF-RSLW 307
>gi|8670542 8-oxoguanine DNA-glycosylase 1 isoform 2e [Homo sapiens]
Length = 322
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 194 AILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR-LRW- 251
A LQQ + L LPGVG K+A +A + VD H+ IA R W
Sbjct: 223 AWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWH 282
Query: 252 --TKKATKSPEETRAALEEWLPRELW 275
T +A +T L + R LW
Sbjct: 283 PTTSQAKGPSPQTNKELGNFF-RSLW 307
>gi|4505495 8-oxoguanine DNA-glycosylase 1 isoform 1a [Homo sapiens]
Length = 345
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 194 AILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR-LRW- 251
A LQQ + L LPGVG K+A +A + VD H+ IA R W
Sbjct: 223 AWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWH 282
Query: 252 --TKKATKSPEETRAALEEWLPRELW 275
T +A +T L + R LW
Sbjct: 283 PTTSQAKGPSPQTNKELGNFF-RSLW 307
>gi|239754748 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 30.8 bits (68), Expect = 1.6
Identities = 18/45 (40%), Positives = 21/45 (46%)
Query: 19 RSRSLGPGAGPRGCREEPGPLRRREAAAEARKSHSPVKRPRKAQR 63
RS S GP PR R P RR A+ + S RPRK+ R
Sbjct: 106 RSPSTGPDRVPRSSRRLPPESRRPGGPAKTHPARSACCRPRKSGR 150
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 38 PLRRREAAAEARKSHSPVKRPRKAQRLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLV 97
P+R E A SP PR+ +G G G+ PL+V V D Q+
Sbjct: 521 PVRLSEGPAAMAGPGSP---PRRVTSFAELAKGRKKTGGSGSPPLRVSV---GDSSQEFS 574
Query: 98 NIRAMRNKKDAPVDHLGTEHCYDSSAPP 125
I+ + + AP+D GT C S PP
Sbjct: 575 PIQEAQQDRGAPLDE-GT--CCSHSLPP 599
>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 38 PLRRREAAAEARKSHSPVKRPRKAQRLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLV 97
P+R E A SP PR+ +G G G+ PL+V V D Q+
Sbjct: 521 PVRLSEGPAAMAGPGSP---PRRVTSFAELAKGRKKTGGSGSPPLRVSV---GDSSQEFS 574
Query: 98 NIRAMRNKKDAPVDHLGTEHCYDSSAPP 125
I+ + + AP+D GT C S PP
Sbjct: 575 PIQEAQQDRGAPLDE-GT--CCSHSLPP 599
>gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2
[Homo sapiens]
Length = 881
Score = 30.8 bits (68), Expect = 1.6
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 5 QESGMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRR 42
Q G+ LSAR R + L GA RG R + G +R+R
Sbjct: 843 QRGGLKQLSARNRRRVQELQQGAFGRGARSKKGKMRKR 880
>gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1
[Homo sapiens]
Length = 882
Score = 30.8 bits (68), Expect = 1.6
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 5 QESGMTALSARMLTRSRSLGPGAGPRGCREEPGPLRRR 42
Q G+ LSAR R + L GA RG R + G +R+R
Sbjct: 844 QRGGLKQLSARNRRRVQELQQGAFGRGARSKKGKMRKR 881
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 30.0 bits (66), Expect = 2.8
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 13 SARMLTRSRSL---GPGAGPRGCREEPGPLRRREAAAEARKSHSPVKRPRK------AQR 63
S+R L+R+RS G G G G EPG R + K P RP A
Sbjct: 419 SSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHG 478
Query: 64 LRVAYEGSDSEKGEGAEP 81
R EG S + G P
Sbjct: 479 RRGGPEGKSSSRSPGPHP 496
Score = 29.3 bits (64), Expect = 4.7
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 19 RSRSLGPGAGPRGCREEPGPLRRREAAAEARKSHSPVKRPRKAQRLRVAYEGSDSEKGEG 78
+S S PG PR P + R +AE ++ HSP + P + L +G +
Sbjct: 486 KSSSRSPGPHPRSWSSSRSPSKSRSRSAE-KRPHSPSRSPSPKKPLSRDKDGEGRARHSE 544
Query: 79 AE 80
AE
Sbjct: 545 AE 546
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.0 bits (66), Expect = 2.8
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 15 RMLTRSRSLGPGAGPRGCREEPGPLRRREAAA-----EARKSHSPVKRPRKAQRLRVAYE 69
R +RSRS P P R P P RR R+S SPV+R R++
Sbjct: 301 RHRSRSRSYSPRRRPSP-RRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSS 359
Query: 70 GSDSEKGEGAEPLKVP 85
S S + P K P
Sbjct: 360 SSSSSSRSRSPPKKPP 375
>gi|61966721 Tctex1 domain containing 4 [Homo sapiens]
Length = 221
Score = 30.0 bits (66), Expect = 2.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 5 QESGMTALSARMLTRSRSLGPGAGPRGCREEPGPL 39
+ M L+A R+ +GPGAGP G R GP+
Sbjct: 50 RRGSMLGLAASFSRRNSLVGPGAGPGGQRPSLGPV 84
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,660,813
Number of Sequences: 37866
Number of extensions: 578100
Number of successful extensions: 2605
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 2550
Number of HSP's gapped (non-prelim): 87
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.