Guide to the Human Genome
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Name: OGG1 Sequence: fasta or formatted (356aa) NCBI GI: 8670540
Description:

8-oxoguanine DNA-glycosylase 1 isoform 2d

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [345aa] 8-oxoguanine DNA-glycosylase 1 isoform 1a
alt prot [324aa] 8-oxoguanine DNA-glycosylase 1 isoform 1b
alt prot [410aa] 8-oxoguanine DNA-glycosylase 1 isoform 1c
alt prot [424aa] 8-oxoguanine DNA-glycosylase 1 isoform 2a
alt prot [357aa] 8-oxoguanine DNA-glycosylase 1 isoform 2b
alt prot [195aa] 8-oxoguanine DNA-glycosylase 1 isoform 2c
alt prot [322aa] 8-oxoguanine DNA-glycosylase 1 isoform 2e
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         31           1
 C cysteine            2.8         10           1
 D aspartate           3.9         14           2
 E glutamate           5.3         19           2
 F phenylalanine       3.4         12           2
 G glycine             6.5         23           2
 H histidine           3.7         13           2
 I isoleucine          3.4         12           1
 K lysine              2.5          9           1
 L leucine            11.5         41           2
 M methionine          2.0          7           1
 N asparagine          1.4          5           3
 P proline             7.0         25           2
 Q glutamine           7.6         27           2
 R arginine            7.0         25           2
 S serine              7.3         26           3
 T threonine           5.1         18           2
 V valine              5.3         19           1
 W tryptophan          3.1         11           1
 Y tyrosine            2.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   8-oxoguanine DNA-glycosylase 1 isoform 2d 
OGG1                  0.883   8-oxoguanine DNA-glycosylase 1 isoform 1a 
OGG1                  0.882   8-oxoguanine DNA-glycosylase 1 isoform 1b 
OGG1                  0.880   8-oxoguanine DNA-glycosylase 1 isoform 2a 
OGG1                  0.880   8-oxoguanine DNA-glycosylase 1 isoform 2e 
OGG1                  0.880   8-oxoguanine DNA-glycosylase 1 isoform 1c 
OGG1                  0.675   8-oxoguanine DNA-glycosylase 1 isoform 2b 
OGG1                  0.515   8-oxoguanine DNA-glycosylase 1 isoform 2c 
NTHL1                 0.011   nth endonuclease III-like 1 
RASAL3                0.008   RAS protein activator like 3 
EFTUD1                0.008   elongation factor Tu GTP binding domain containing 1...
EFTUD1                0.008   elongation factor Tu GTP binding domain containing 1...
CTNND2                0.007   catenin (cadherin-associated protein), delta 2 (neur...
PDZD3                 0.007   PDZ domain containing 3 
CCS                   0.007   copper chaperone for superoxide dismutase 
SSPO                  0.006   SCO-spondin 
IQSEC2                0.006   IQ motif and Sec7 domain 2 isoform 2 
IQSEC2                0.006   IQ motif and Sec7 domain 2 isoform1 
SYNCRIP               0.004   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.004   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.004   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.004   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.004   synaptotagmin binding, cytoplasmic RNA interacting ...
KLK10                 0.004   kallikrein-related peptidase 10 preproprotein [Homo...
KLK10                 0.004   kallikrein-related peptidase 10 preproprotein 
KLK10                 0.004   kallikrein-related peptidase 10 preproprotein 
MEGF8                 0.004   multiple EGF-like-domains 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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