Guide to the Human Genome
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Name: ZNF643 Sequence: fasta or formatted (432aa) NCBI GI: 12751479
Description:

zinc finger protein 643

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.9          8           1
 C cysteine            5.6         24           1
 D aspartate           2.1          9           1
 E glutamate           7.6         33           2
 F phenylalanine       4.2         18           2
 G glycine             6.5         28           1
 H histidine           6.2         27           1
 I isoleucine          5.8         25           2
 K lysine             10.0         43           2
 L leucine             5.8         25           1
 M methionine          2.3         10           2
 N asparagine          3.2         14           1
 P proline             4.2         18           1
 Q glutamine           5.1         22           2
 R arginine            7.2         31           1
 S serine              9.3         40           3
 T threonine           6.2         27           1
 V valine              3.7         16           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 643 
ZNF642                0.619   zinc finger protein 642 
ZNF184                0.428   zinc finger protein 184 
ZNF383                0.427   zinc finger protein 383 
ZNF570                0.426   zinc finger protein 570 
ZNF583                0.418   zinc finger protein 583 
ZNF583                0.418   zinc finger protein 583 
ZNF583                0.418   zinc finger protein 583 
LOC344065             0.412   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.412   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.412   PREDICTED: similar to zinc finger protein 570 [Homo...
DKFZp686E2433         0.409   hypothetical protein LOC345462 
ZNF624                0.402   zinc finger protein 624 
ZNF543                0.399   zinc finger protein 543 
ZNF10                 0.399   zinc finger protein 10 
ZNF286A               0.399   zinc finger protein 286 
ZNF286A               0.399   zinc finger protein 286 
ZNF251                0.396   zinc finger protein 251 
ZNF135                0.394   zinc finger protein 135 
ZNF34                 0.394   zinc finger protein 34 
ZNF582                0.392   zinc finger protein 582 
ZNF565                0.390   zinc finger protein 565 
ZNF565                0.390   zinc finger protein 565 
ZNF568                0.390   zinc finger protein 568 
ZNF85                 0.385   zinc finger protein 85 
ZNF480                0.378   zinc finger protein 480 
ZFP30                 0.378   zinc finger protein 30 homolog 
ZFP82                 0.376   zinc finger protein 82 homolog 
ZNF79                 0.375   zinc finger protein 79 
ZNF354C               0.374   zinc finger protein 354C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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