Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4505035
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505035 lymphotoxin-beta isoform a [Homo sapiens]
(244 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505035 lymphotoxin-beta isoform a [Homo sapiens] 491 e-139
gi|6996016 lymphotoxin-beta isoform b [Homo sapiens] 104 6e-23
gi|25952111 tumor necrosis factor alpha [Homo sapiens] 64 9e-11
gi|25952144 tumor necrosis factor ligand superfamily, member 14 ... 60 2e-09
gi|25952147 tumor necrosis factor ligand superfamily, member 14 ... 57 1e-08
gi|6806893 lymphotoxin alpha precursor [Homo sapiens] 56 2e-08
gi|229092381 lymphotoxin alpha precursor [Homo sapiens] 56 2e-08
gi|4557329 fas ligand [Homo sapiens] 50 2e-06
gi|23510445 tumor necrosis factor (ligand) superfamily, member 1... 48 9e-06
gi|14790152 tumor necrosis factor ligand superfamily, member 11 ... 45 8e-05
gi|4507595 tumor necrosis factor ligand superfamily, member 11 i... 45 8e-05
gi|4557433 CD40 ligand [Homo sapiens] 42 6e-04
gi|4507593 tumor necrosis factor (ligand) superfamily, member 10... 37 0.012
gi|239752010 PREDICTED: hypothetical protein XP_002348066 [Homo ... 33 0.30
gi|239746495 PREDICTED: hypothetical protein XP_002343746 [Homo ... 33 0.30
gi|116292174 fidgetin-like 2 [Homo sapiens] 32 0.39
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 32 0.50
gi|221316695 multimerin 2 precursor [Homo sapiens] 31 0.86
gi|4502175 apical protein of Xenopus-like [Homo sapiens] 31 0.86
gi|224591404 cancer/testis antigen family 147, member B1 [Homo s... 31 1.1
gi|10047144 sal-like 4 [Homo sapiens] 30 1.5
gi|110349786 Alstrom syndrome 1 [Homo sapiens] 30 1.5
gi|239757493 PREDICTED: hypothetical protein [Homo sapiens] 30 2.5
gi|239745861 PREDICTED: similar to Apoptosis-related protein 2 [... 30 2.5
gi|239745853 PREDICTED: similar to Apoptosis-related protein 2 [... 30 2.5
gi|239740957 PREDICTED: similar to Apoptosis-related protein 2 [... 30 2.5
gi|239740935 PREDICTED: similar to Apoptosis-related protein 2 [... 30 2.5
gi|121949802 cancer/testis antigen family 47, member A1 [Homo sa... 29 3.3
gi|121949798 cancer/testis antigen family 47, member A2 [Homo sa... 29 3.3
gi|121949773 cancer/testis antigen family 47, member A3 [Homo sa... 29 3.3
>gi|4505035 lymphotoxin-beta isoform a [Homo sapiens]
Length = 244
Score = 491 bits (1264), Expect = e-139
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLVTETAD 60
MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLVTETAD
Sbjct: 1 MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLVTETAD 60
Query: 61 PGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFS 120
PGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFS
Sbjct: 61 PGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFS 120
Query: 121 DAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLE 180
DAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLE
Sbjct: 121 DAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLE 180
Query: 181 GAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFGA 240
GAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFGA
Sbjct: 181 GAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFGA 240
Query: 241 VMVG 244
VMVG
Sbjct: 241 VMVG 244
>gi|6996016 lymphotoxin-beta isoform b [Homo sapiens]
Length = 77
Score = 104 bits (260), Expect = 6e-23
Identities = 58/75 (77%), Positives = 61/75 (81%)
Query: 1 MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLVTETAD 60
MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGL +
Sbjct: 1 MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLGFRSCQ 60
Query: 61 PGAQAQQGLGFQKLP 75
+Q Q +LP
Sbjct: 61 RRSQKQISAPGSQLP 75
>gi|25952111 tumor necrosis factor alpha [Homo sapiens]
Length = 233
Score = 64.3 bits (155), Expect = 9e-11
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 88 PAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPP 147
P AH++ P L W + A L +G + D + L +P +GLY +Y V ++G+ P
Sbjct: 88 PVAHVVANPQAEGQLQWLNRRANALLANGVELRDNQ-LVVPSEGLYLIYSQVLFKGQGCP 146
Query: 148 GGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLEGAETVTPVLDPARRQ----GYGPLWYT 203
V L ++ R +Y ++ + P +R+ WY
Sbjct: 147 S------THVLLTHTISRIAVSYQTKV--------NLLSAIKSPCQRETPEGAEAKPWYE 192
Query: 204 SVGFGGLVQLRRGERVYVNISHPDMVDFAR-GKTFFGAV 241
+ GG+ QL +G+R+ I+ PD +DFA G+ +FG +
Sbjct: 193 PIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGII 231
>gi|25952144 tumor necrosis factor ligand superfamily, member 14
isoform 1 precursor [Homo sapiens]
Length = 240
Score = 59.7 bits (143), Expect = 2e-09
Identities = 74/241 (30%), Positives = 106/241 (43%), Gaps = 29/241 (12%)
Query: 9 RGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLAL-VPQDQGGLVTETADPGAQAQQ 67
R GR R S +A G L+ LL+ + V L + G +VT D A +
Sbjct: 23 RLGRSHRRQSCSVARVGL-GLLLLLMGAGLAVQGWFLLQLHWRLGEMVTRLPDGPAGS-- 79
Query: 68 GLGFQKLPEEEPETDLSPGLPAAHLIGA--PLKGQG--LGWETTKEQAFLTSGTQFSDAE 123
+++L +E +++P AAHL GA L G G L WET AFL G + D
Sbjct: 80 ---WEQLIQERRSHEVNP---AAHLTGANSSLTGSGGPLLWETQLGLAFLR-GLSYHDG- 131
Query: 124 GLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLEGAE 183
L + + G YY+Y V G G P G + T+ LY+ Y P ELL+
Sbjct: 132 ALVVTKAGYYYIYSKVQLGGV-----GCPLGLASTITHGLYKRTPRY-PEELELLVSQQS 185
Query: 184 TVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARG-KTFFGAVM 242
+R +W+ S GG+V L GE+V V + +V G +++FGA M
Sbjct: 186 PCGRATSSSR------VWWDSSFLGGVVHLEAGEKVVVRVLDERLVRLRDGTRSYFGAFM 239
Query: 243 V 243
V
Sbjct: 240 V 240
>gi|25952147 tumor necrosis factor ligand superfamily, member 14
isoform 2 [Homo sapiens]
Length = 204
Score = 57.4 bits (137), Expect = 1e-08
Identities = 55/161 (34%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 88 PAAHLIGA--PLKGQG--LGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYLYCLVGYRG 143
PAAHL GA L G G L WET AFL G + D L + + G YY+Y V G
Sbjct: 58 PAAHLTGANSSLTGSGGPLLWETQLGLAFLR-GLSYHDG-ALVVTKAGYYYIYSKVQLGG 115
Query: 144 RAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLEGAETVTPVLDPARRQGYGPLWYT 203
G P G + T+ LY+ Y P ELL+ +R +W+
Sbjct: 116 V-----GCPLGLASTITHGLYKRTPRY-PEELELLVSQQSPCGRATSSSR------VWWD 163
Query: 204 SVGFGGLVQLRRGERVYVNISHPDMVDFARG-KTFFGAVMV 243
S GG+V L GE V V + +V G +++FGA MV
Sbjct: 164 SSFLGGVVHLEAGEEVVVRVLDERLVRLRDGTRSYFGAFMV 204
>gi|6806893 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 56.2 bits (134), Expect = 2e-08
Identities = 55/190 (28%), Positives = 79/190 (41%), Gaps = 27/190 (14%)
Query: 61 PGAQAQQGLGFQ----KLPEEEPETDLSPGL--PAAHLIGAPLKGQGLGWETTKEQAFLT 114
PGAQ G+G + + P+ L+ PAAHLIG P K L W ++AFL
Sbjct: 30 PGAQGLPGVGLTPSAAQTARQHPKMHLAHSTLKPAAHLIGDPSKQNSLLWRANTDRAFLQ 89
Query: 115 SGTQFSDAEGLALPQDGLYYLYCLVGYRGRA--PPGGGDP--QGRSVTLRSSLYRAGGAY 170
G S+ L +P G+Y++Y V + G+A P P V L SS Y +
Sbjct: 90 DGFSLSN-NSLLVPTSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQY---PFH 145
Query: 171 GPGTPELLLEGAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVD 230
P LL + V P G W S+ G QL +G+++ + +
Sbjct: 146 VP-----LLSSQKMVYP--------GLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLV 192
Query: 231 FARGKTFFGA 240
+ FFGA
Sbjct: 193 LSPSTVFFGA 202
>gi|229092381 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 56.2 bits (134), Expect = 2e-08
Identities = 55/190 (28%), Positives = 79/190 (41%), Gaps = 27/190 (14%)
Query: 61 PGAQAQQGLGFQ----KLPEEEPETDLSPGL--PAAHLIGAPLKGQGLGWETTKEQAFLT 114
PGAQ G+G + + P+ L+ PAAHLIG P K L W ++AFL
Sbjct: 30 PGAQGLPGVGLTPSAAQTARQHPKMHLAHSTLKPAAHLIGDPSKQNSLLWRANTDRAFLQ 89
Query: 115 SGTQFSDAEGLALPQDGLYYLYCLVGYRGRA--PPGGGDP--QGRSVTLRSSLYRAGGAY 170
G S+ L +P G+Y++Y V + G+A P P V L SS Y +
Sbjct: 90 DGFSLSN-NSLLVPTSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQY---PFH 145
Query: 171 GPGTPELLLEGAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVD 230
P LL + V P G W S+ G QL +G+++ + +
Sbjct: 146 VP-----LLSSQKMVYP--------GLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLV 192
Query: 231 FARGKTFFGA 240
+ FFGA
Sbjct: 193 LSPSTVFFGA 202
>gi|4557329 fas ligand [Homo sapiens]
Length = 281
Score = 50.1 bits (118), Expect = 2e-06
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 32/188 (17%)
Query: 56 TETADPGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIG-APLKGQGLGWETTKEQAFLT 114
T + ++ +G P E+ E AHL G + + L WE T L
Sbjct: 118 TSQMHTASSLEKQIGHPSPPPEKKELR-----KVAHLTGKSNSRSMPLEWEDTYGIVLL- 171
Query: 115 SGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGT 174
SG ++ GL + + GLY++Y V +RG++ P V +R+S Y
Sbjct: 172 SGVKYKKG-GLVINETGLYFVYSKVYFRGQSC--NNLPLSHKVYMRNSKY---------- 218
Query: 175 PELLLEGAETVTPVLDPARRQGY---GPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDF 231
P+ L V+ + Y G +W S G + L + +YVN+S +V+F
Sbjct: 219 PQDL---------VMMEGKMMSYCTTGQMWARSSYLGAVFNLTSADHLYVNVSELSLVNF 269
Query: 232 ARGKTFFG 239
+TFFG
Sbjct: 270 EESQTFFG 277
>gi|23510445 tumor necrosis factor (ligand) superfamily, member 15
[Homo sapiens]
Length = 251
Score = 47.8 bits (112), Expect = 9e-06
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 21/149 (14%)
Query: 102 LGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPP------GGGDPQGR 155
L WE AF + +++ + L +P+ G Y++Y V +RG G +
Sbjct: 117 LHWEHELGLAFTKNRMNYTN-KFLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPD 175
Query: 156 SVTLRSSLYRAGGAYGPGTPELLLEGAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRR 215
S+T+ + + +Y P LL G ++V V G W+ + G + L+
Sbjct: 176 SITV--VITKVTDSYPE--PTQLLMGTKSVCEV---------GSNWFQPIYLGAMFSLQE 222
Query: 216 GERVYVNISHPDMVDFAR-GKTFFGAVMV 243
G+++ VN+S +VD+ + KTFFGA ++
Sbjct: 223 GDKLMVNVSDISLVDYTKEDKTFFGAFLL 251
>gi|14790152 tumor necrosis factor ligand superfamily, member 11
isoform 2 [Homo sapiens]
Length = 244
Score = 44.7 bits (104), Expect = 8e-05
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 115 SGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGT 174
S FS+ + L + QDG YYLY + +R G + L+ +Y + +
Sbjct: 124 SNMTFSNGK-LIVNQDGFYYLYANICFRHHETSGDLATE----YLQLMVYVTKTSIKIPS 178
Query: 175 PELLLEGAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARG 234
L++G T G + S+ GG +LR GE + + +S+P ++D +
Sbjct: 179 SHTLMKGGST-------KYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQD 231
Query: 235 KTFFGAVMV 243
T+FGA V
Sbjct: 232 ATYFGAFKV 240
>gi|4507595 tumor necrosis factor ligand superfamily, member 11
isoform 1 [Homo sapiens]
Length = 317
Score = 44.7 bits (104), Expect = 8e-05
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 115 SGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGT 174
S FS+ + L + QDG YYLY + +R G + L+ +Y + +
Sbjct: 197 SNMTFSNGK-LIVNQDGFYYLYANICFRHHETSGDLATE----YLQLMVYVTKTSIKIPS 251
Query: 175 PELLLEGAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARG 234
L++G T G + S+ GG +LR GE + + +S+P ++D +
Sbjct: 252 SHTLMKGGST-------KYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQD 304
Query: 235 KTFFGAVMV 243
T+FGA V
Sbjct: 305 ATYFGAFKV 313
>gi|4557433 CD40 ligand [Homo sapiens]
Length = 261
Score = 41.6 bits (96), Expect = 6e-04
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 125 LALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLEGAET 184
L + + GLYY+Y V + P S+ L+S PG E +L A
Sbjct: 161 LTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKS----------PGRFERILLRAAN 210
Query: 185 VTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFG 239
P +Q S+ GG+ +L+ G V+VN++ P V G T FG
Sbjct: 211 THSSAKPCGQQ--------SIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFG 257
>gi|4507593 tumor necrosis factor (ligand) superfamily, member 10
[Homo sapiens]
Length = 281
Score = 37.4 bits (85), Expect = 0.012
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 104 WETTKEQAFLTSGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSL 163
WE+++ S + E L + + G YY+Y +R + + +
Sbjct: 154 WESSRSGHSFLSNLHLRNGE-LVIHEKGFYYIYSQTYFRFQEEIKENTKNDKQMVQYIYK 212
Query: 164 YRAGGAYGPGTPELLLEGAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNI 223
Y + P LL++ A D YG S+ GG+ +L+ +R++V++
Sbjct: 213 YTSYP-----DPILLMKSARNSCWSKDAE----YG---LYSIYQGGIFELKENDRIFVSV 260
Query: 224 SHPDMVDFARGKTFFGAVMVG 244
++ ++D +FFGA +VG
Sbjct: 261 TNEHLIDMDHEASFFGAFLVG 281
>gi|239752010 PREDICTED: hypothetical protein XP_002348066 [Homo
sapiens]
Length = 211
Score = 32.7 bits (73), Expect = 0.30
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 138 LVGYRGRAPPGGGDPQ-----GRSVTLRSSLYRAGGAYGPGTPEL--------------L 178
++G RG PP GG P+ R + +RS L A A G G L
Sbjct: 83 ILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAA--ARGSGAAPLPPCSAAYTRLSGTGA 140
Query: 179 LEGAETVTP--VLDPARRQGYGPLWYTS--VGFGGLVQLRRGERVYVNISHPDM 228
EG TP VLDP+R + +GPL+ + GL R+G + + P +
Sbjct: 141 REGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSL 194
>gi|239746495 PREDICTED: hypothetical protein XP_002343746 [Homo
sapiens]
Length = 211
Score = 32.7 bits (73), Expect = 0.30
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 138 LVGYRGRAPPGGGDPQ-----GRSVTLRSSLYRAGGAYGPGTPEL--------------L 178
++G RG PP GG P+ R + +RS L A A G G L
Sbjct: 83 ILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAA--ARGSGAAPLPPCSAAYTRLSGTGA 140
Query: 179 LEGAETVTP--VLDPARRQGYGPLWYTS--VGFGGLVQLRRGERVYVNISHPDM 228
EG TP VLDP+R + +GPL+ + GL R+G + + P +
Sbjct: 141 REGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSL 194
>gi|116292174 fidgetin-like 2 [Homo sapiens]
Length = 653
Score = 32.3 bits (72), Expect = 0.39
Identities = 39/140 (27%), Positives = 50/140 (35%), Gaps = 14/140 (10%)
Query: 62 GAQAQQGLGFQKLPEEEPETD-LSPGLPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFS 120
G AQ G G P P L+PGLPA + AP G+ T A SG
Sbjct: 209 GYAAQPGYGALPPPPGPPPAPYLTPGLPAPTPLPAPAPPTAYGFPTAAPGA--ESGLSLK 266
Query: 121 DAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYR---------AGGAYG 171
P +G Y Y + G P + R + +R A G YG
Sbjct: 267 RKAADEGP-EGRYRKYAYEPAKAPVADGASYPAADNGECRGNGFRAKPPGAAEEASGKYG 325
Query: 172 PGTPELLLEGAETVTPVLDP 191
G P L + G+ P L+P
Sbjct: 326 GGVP-LKVLGSPVYGPQLEP 344
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 32.0 bits (71), Expect = 0.50
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 129 QDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTP 175
QDG Y L CLVG G GGG + + Y GG GPG P
Sbjct: 41 QDGEYGLGCLVG--GAYTYGGGGSAAATGAGGAGAYGTGGPGGPGGP 85
>gi|221316695 multimerin 2 precursor [Homo sapiens]
Length = 949
Score = 31.2 bits (69), Expect = 0.86
Identities = 53/202 (26%), Positives = 77/202 (38%), Gaps = 22/202 (10%)
Query: 45 ALVPQDQGGLVTETADPGAQAQQGLGFQKL---PEEEPETDLSPGLPAAHLIGAPLKGQG 101
A V D G L T + G + Q+ L + E EP D+ P +GA L
Sbjct: 764 ANVSLDLGKLQTMLSRKGKKQQKDLEAPRKRDKKEAEPLVDIRVTGPVPGALGAAL---- 819
Query: 102 LGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRS 161
WE AF S FS+ AL Y +G G R V L +
Sbjct: 820 --WEAGSPVAFYAS---FSEGTA-ALQTVKFNTTYINIGSSYFPEHGYFRAPERGVYLFA 873
Query: 162 SLYRAGGAYGPGTPELLLEGAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYV 221
G GPGT +L+ G TPV + G T+ F + +L++GERV+
Sbjct: 874 VSVEFGP--GPGTGQLVFGGHHR-TPVCTTGQGSGS-----TATVFA-MAELQKGERVWF 924
Query: 222 NISHPDMVDFARGKTFFGAVMV 243
++ + + T FG ++
Sbjct: 925 ELTQGSITKRSLSGTAFGGFLM 946
>gi|4502175 apical protein of Xenopus-like [Homo sapiens]
Length = 1616
Score = 31.2 bits (69), Expect = 0.86
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 143 GRAPPGGGDPQGRSVTLRSSLYRAGGAYGPG-TPELLLEGAETVTPVLDPARRQGYGPLW 201
GR GDPQG L R G G G PE E P L R +GP+W
Sbjct: 249 GRQAQAAGDPQGSEEKLSCFPPRVPGDSGKGPRPEYNAE------PKLAAPGRSNFGPVW 302
Query: 202 Y 202
Y
Sbjct: 303 Y 303
>gi|224591404 cancer/testis antigen family 147, member B1 [Homo
sapiens]
Length = 299
Score = 30.8 bits (68), Expect = 1.1
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 51 QGGLVTETADPGAQAQQ-GLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKE 109
QG + GAQA+ G G Q+ + P D S +PAA ++G +GLG E ++
Sbjct: 11 QGDQEAPVSQEGAQAEAAGAGNQEGGDSGP--DSSDMVPAAEVVGVAGPVEGLGEEEGEQ 68
Query: 110 QAFLTSGTQFSDAE 123
A L + Q AE
Sbjct: 69 AAGLAAVPQGGSAE 82
>gi|10047144 sal-like 4 [Homo sapiens]
Length = 1053
Score = 30.4 bits (67), Expect = 1.5
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 113 LTSGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGP 172
L+SGT D G +LP D G +P G P V + RAGG G
Sbjct: 489 LSSGTNPKDLTGGSLPGDL---------QPGPSPESEGGPTLPGVGPNYNSPRAGGFQGS 539
Query: 173 GTPELLLEGAETV 185
GTPE G+ET+
Sbjct: 540 GTPE---PGSETL 549
>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
Length = 4169
Score = 30.4 bits (67), Expect = 1.5
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 47 VPQDQGGLVTETADPGAQAQQGLGFQKLPEEEPETDLSPGLPAAHLIGAP 96
+P + T PG+ QQ L LPEE E ++PG P IG P
Sbjct: 1422 IPTLPSTFYSHTEKPGSFYQQVLPHSHLPEEALEVSVAPG-PVDQTIGTP 1470
>gi|239757493 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 29.6 bits (65), Expect = 2.5
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 25/110 (22%)
Query: 142 RGRAPPGGGDPQG-----RSVTLRSSLYRAGGAYGPGTPEL--------------LLEGA 182
RG PP GG P+ R + +RS L A A G G L EG
Sbjct: 87 RGSYPPVGGPPRHLPPGPRHLRIRSRLPAA--ARGSGAAPLPPCSAAYTRLSGTGAREGL 144
Query: 183 ETVTPV--LDPARRQGYGPLWYTS--VGFGGLVQLRRGERVYVNISHPDM 228
TPV LDP+R + +GPL+ + GL R+G + + P +
Sbjct: 145 RIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSL 194
>gi|239745861 PREDICTED: similar to Apoptosis-related protein 2
[Homo sapiens]
Length = 111
Score = 29.6 bits (65), Expect = 2.5
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 80 ETDLSPGLPAAHL----IGAPLKGQGLGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYL 135
+T LSPG AH+ +G K + E T E A G P+ L+
Sbjct: 8 DTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVAL---GGSAGPVRSHLHPEGLLWCS 64
Query: 136 YCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAG 167
C R P G +P GRS L+ + R+G
Sbjct: 65 RCFFSLR----PKGTEPPGRSAGLQGATERSG 92
>gi|239745853 PREDICTED: similar to Apoptosis-related protein 2
[Homo sapiens]
Length = 111
Score = 29.6 bits (65), Expect = 2.5
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 80 ETDLSPGLPAAHL----IGAPLKGQGLGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYL 135
+T LSPG AH+ +G K + E T E A G P+ L+
Sbjct: 8 DTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVAL---GGSAGPVRSHLHPEGLLWCS 64
Query: 136 YCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAG 167
C R P G +P GRS L+ + R+G
Sbjct: 65 RCFFSLR----PKGTEPPGRSAGLQGATERSG 92
>gi|239740957 PREDICTED: similar to Apoptosis-related protein 2
[Homo sapiens]
Length = 111
Score = 29.6 bits (65), Expect = 2.5
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 80 ETDLSPGLPAAHL----IGAPLKGQGLGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYL 135
+T LSPG AH+ +G K + E T E A G P+ L+
Sbjct: 8 DTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVAL---GGSAGPVRSHLHPEGLLWCS 64
Query: 136 YCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAG 167
C R P G +P GRS L+ + R+G
Sbjct: 65 RCFFSLR----PKGTEPPGRSAGLQGATERSG 92
>gi|239740935 PREDICTED: similar to Apoptosis-related protein 2
[Homo sapiens]
Length = 111
Score = 29.6 bits (65), Expect = 2.5
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 80 ETDLSPGLPAAHL----IGAPLKGQGLGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYL 135
+T LSPG AH+ +G K + E T E A G P+ L+
Sbjct: 8 DTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVAL---GGSAGPVRSHLHPEGLLWCS 64
Query: 136 YCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAG 167
C R P G +P GRS L+ + R+G
Sbjct: 65 RCFFSLR----PKGTEPPGRSAGLQGATERSG 92
>gi|121949802 cancer/testis antigen family 47, member A1 [Homo
sapiens]
Length = 288
Score = 29.3 bits (64), Expect = 3.3
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 51 QGGLVTETADPGAQAQQ-GLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKE 109
QG + GAQA+ G G Q+ + P D S +PAA ++G +GLG E ++
Sbjct: 11 QGDQEAPVSQEGAQAEAAGAGNQEGGDSGP--DSSDVVPAAEVVGVAGPVEGLGEEEGEQ 68
Query: 110 QAFLTSGTQFSDAE 123
A L + + AE
Sbjct: 69 AAGLAAVPRGGSAE 82
>gi|121949798 cancer/testis antigen family 47, member A2 [Homo
sapiens]
Length = 288
Score = 29.3 bits (64), Expect = 3.3
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 51 QGGLVTETADPGAQAQQ-GLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKE 109
QG + GAQA+ G G Q+ + P D S +PAA ++G +GLG E ++
Sbjct: 11 QGDQEAPVSQEGAQAEAAGAGNQEGGDSGP--DSSDVVPAAEVVGVAGPVEGLGEEEGEQ 68
Query: 110 QAFLTSGTQFSDAE 123
A L + + AE
Sbjct: 69 AAGLAAVPRGGSAE 82
>gi|121949773 cancer/testis antigen family 47, member A3 [Homo
sapiens]
Length = 288
Score = 29.3 bits (64), Expect = 3.3
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 51 QGGLVTETADPGAQAQQ-GLGFQKLPEEEPETDLSPGLPAAHLIGAPLKGQGLGWETTKE 109
QG + GAQA+ G G Q+ + P D S +PAA ++G +GLG E ++
Sbjct: 11 QGDQEAPVSQEGAQAEAAGAGNQEGGDSGP--DSSDVVPAAEVVGVAGPVEGLGEEEGEQ 68
Query: 110 QAFLTSGTQFSDAE 123
A L + + AE
Sbjct: 69 AAGLAAVPRGGSAE 82
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.140 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,984,428
Number of Sequences: 37866
Number of extensions: 606489
Number of successful extensions: 1754
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1716
Number of HSP's gapped (non-prelim): 66
length of query: 244
length of database: 18,247,518
effective HSP length: 99
effective length of query: 145
effective length of database: 14,498,784
effective search space: 2102323680
effective search space used: 2102323680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.