Guide to the Human Genome
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Name: LOC644354 Sequence: fasta or formatted (111aa) NCBI GI: 239745853
Description:

PREDICTED: similar to Apoptosis-related protein 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         13           2
 C cysteine            3.6          4           1
 D aspartate           0.9          1           1
 E glutamate           6.3          7           1
 F phenylalanine       4.5          5           2
 G glycine            11.7         13           2
 H histidine           2.7          3           1
 I isoleucine          0.9          1           1
 K lysine              3.6          4           1
 L leucine             9.0         10           2
 M methionine          1.8          2           1
 N asparagine          0.9          1           1
 P proline             6.3          7           2
 Q glutamine           4.5          5           1
 R arginine            6.3          7           1
 S serine             11.7         13           2
 T threonine           4.5          5           1
 V valine              6.3          7           1
 W tryptophan          2.7          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Apoptosis-related protein 2 [... 
LOC729008             0.985   PREDICTED: similar to Apoptosis-related protein 2 [...
LOC100294339          0.985   PREDICTED: similar to Apoptosis-related protein 2 [...
LOC100294332          0.985   PREDICTED: similar to Apoptosis-related protein 2 [...
LTB                   0.024   lymphotoxin-beta isoform a 
MKNK1                 0.010   MAP kinase-interacting serine/threonine kinase 1 iso...
LOC729081             0.010   PREDICTED: similar to hCG2040253 
LOC729081             0.010   PREDICTED: similar to hCG2040253 
PHKA2                 0.010   phosphorylase kinase, alpha 2 (liver) 
KLF1                  0.010   Kruppel-like factor 1 (erythroid) 
LOC100289881          0.010   PREDICTED: hypothetical protein XP_002347282 
LONRF2                0.010   LON peptidase N-terminal domain and ring finger 2 [...
C1orf127              0.010   hypothetical protein LOC148345 
PGP                   0.010   phosphoglycolate phosphatase 
LOC100293943          0.005   PREDICTED: hypothetical protein 
LOC100290754          0.005   PREDICTED: hypothetical protein XP_002347676 
LOC100288847          0.005   PREDICTED: hypothetical protein XP_002343470 
FAM53A                0.005   dorsal neural-tube nuclear protein 
HCN4                  0.005   hyperpolarization activated cyclic nucleotide-gated p...
NOS1AP                0.005   nitric oxide synthase 1 (neuronal) adaptor protein i...
NOS1AP                0.005   nitric oxide synthase 1 (neuronal) adaptor protein ...
KLF15                 0.005   Kruppel-like factor 15 
RNF112                0.005   ring finger protein 112 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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