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Search of human proteins with 4504957
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504957 lysosomal-associated membrane protein 2 isoform A
precursor [Homo sapiens]
(410 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504957 lysosomal-associated membrane protein 2 isoform A pre... 833 0.0
gi|7669503 lysosomal-associated membrane protein 2 isoform B pre... 793 0.0
gi|169790833 lysosomal-associated membrane protein 2 isoform C p... 786 0.0
gi|112380628 lysosomal-associated membrane protein 1 [Homo sapiens] 260 1e-69
gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens] 98 1e-20
gi|91199550 CD68 antigen isoform B [Homo sapiens] 74 2e-13
gi|91199548 CD68 antigen isoform A [Homo sapiens] 74 2e-13
gi|63003910 ATPase, H+ transporting, lysosomal accessory protein... 42 0.001
gi|7110633 chromosome 20 open reading frame 103 precursor [Homo ... 38 0.019
gi|119874201 furry-like [Homo sapiens] 34 0.27
gi|59710093 G-protein coupled receptor 112 [Homo sapiens] 34 0.27
gi|239757995 PREDICTED: similar to hCG1747327, partial [Homo sap... 33 0.61
gi|116284392 mucin 2 precursor [Homo sapiens] 31 1.8
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 30 4.0
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 30 4.0
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 30 4.0
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 30 4.0
gi|169210192 PREDICTED: hypothetical protein [Homo sapiens] 29 6.8
gi|113425957 PREDICTED: hypothetical protein [Homo sapiens] 29 6.8
gi|17136148 ATPase, H+ transporting, lysosomal accessory protein... 29 6.8
gi|161019170 mucin 5AC [Homo sapiens] 29 8.8
gi|18641347 protein tyrosine phosphatase, receptor type, C isofo... 29 8.8
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 29 8.8
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 29 8.8
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 29 8.8
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 29 8.8
gi|148613886 regulatory factor X domain containing 2 [Homo sapiens] 29 8.8
gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H... 29 8.8
>gi|4504957 lysosomal-associated membrane protein 2 isoform A
precursor [Homo sapiens]
Length = 410
Score = 833 bits (2151), Expect = 0.0
Identities = 410/410 (100%), Positives = 410/410 (100%)
Query: 1 MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT 60
MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT
Sbjct: 1 MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT 60
Query: 61 YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT 120
YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT
Sbjct: 61 YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT 120
Query: 121 GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG 180
GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG
Sbjct: 121 GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG 180
Query: 181 TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ 240
TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ
Sbjct: 181 TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ 240
Query: 241 LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN 300
LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN
Sbjct: 241 LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN 300
Query: 301 ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG 360
ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG
Sbjct: 301 ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG 360
Query: 361 KYSTAQDCSADDDNFLVPIAVGAALAGVLILVLLAYFIGLKHHHAGYEQF 410
KYSTAQDCSADDDNFLVPIAVGAALAGVLILVLLAYFIGLKHHHAGYEQF
Sbjct: 361 KYSTAQDCSADDDNFLVPIAVGAALAGVLILVLLAYFIGLKHHHAGYEQF 410
>gi|7669503 lysosomal-associated membrane protein 2 isoform B
precursor [Homo sapiens]
Length = 410
Score = 793 bits (2049), Expect = 0.0
Identities = 387/408 (94%), Positives = 399/408 (97%)
Query: 1 MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT 60
MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT
Sbjct: 1 MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT 60
Query: 61 YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT 120
YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT
Sbjct: 61 YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT 120
Query: 121 GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG 180
GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG
Sbjct: 121 GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG 180
Query: 181 TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ 240
TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ
Sbjct: 181 TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ 240
Query: 241 LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN 300
LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN
Sbjct: 241 LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN 300
Query: 301 ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG 360
ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG
Sbjct: 301 ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG 360
Query: 361 KYSTAQDCSADDDNFLVPIAVGAALAGVLILVLLAYFIGLKHHHAGYE 408
KYSTAQ+CS DDD L+PI VGA L+G++I++++AY IG + +AGY+
Sbjct: 361 KYSTAQECSLDDDTILIPIIVGAGLSGLIIVIVIAYVIGRRKSYAGYQ 408
>gi|169790833 lysosomal-associated membrane protein 2 isoform C
precursor [Homo sapiens]
Length = 411
Score = 786 bits (2031), Expect = 0.0
Identities = 386/409 (94%), Positives = 397/409 (97%), Gaps = 1/409 (0%)
Query: 1 MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT 60
MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT
Sbjct: 1 MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT 60
Query: 61 YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT 120
YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT
Sbjct: 61 YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT 120
Query: 121 GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG 180
GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG
Sbjct: 121 GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG 180
Query: 181 TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ 240
TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ
Sbjct: 181 TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ 240
Query: 241 LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN 300
LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN
Sbjct: 241 LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN 300
Query: 301 ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG 360
ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG
Sbjct: 301 ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG 360
Query: 361 KYSTAQDCSADDD-NFLVPIAVGAALAGVLILVLLAYFIGLKHHHAGYE 408
KYSTA++CSAD D NFL+P+AVG AL ++I+V ++Y IG + GY+
Sbjct: 361 KYSTAEECSADSDLNFLIPVAVGVALGFLIIVVFISYMIGRRKSRTGYQ 409
>gi|112380628 lysosomal-associated membrane protein 1 [Homo sapiens]
Length = 417
Score = 260 bits (665), Expect = 1e-69
Identities = 151/416 (36%), Positives = 237/416 (56%), Gaps = 21/416 (5%)
Query: 10 PGSG-----LVLVCLVLGAVRSYALELNLTDSENAT-CLYAKWQMNFTVRYET-TNKTYK 62
PGS L+L+ L+LG + + + + + N T C+ A + F+V Y+T +
Sbjct: 4 PGSARRPLLLLLLLLLLGLMHCASAAMFMVKNGNGTACIMANFSAAFSVNYDTKSGPKNM 63
Query: 63 TVTISDHGTVTYNGSICG-DDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNTG 121
T + TV N S CG ++ + P + + FG G + NFT+ A+ YS+ +SF YN
Sbjct: 64 TFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQLMSFVYNLS 123
Query: 122 DNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNGT 181
D FP+A K I TV+ + IR ++ +RC S + + N+V D +QA++ N +
Sbjct: 124 DTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDATIQAYLSNSS 183
Query: 182 VSTNEFLCDKDKTS-TVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ 240
S E C++D+ S T AP PSP+ +P PK P Y+V+ N TCLLA+MGLQ
Sbjct: 184 FSRGETRCEQDRPSPTTAPP---APPSPSPSPVPKS-PSVDKYNVSGTNGTCLLASMGLQ 239
Query: 241 LNITQDK-----VASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVK-NENRF 294
LN+T ++ V ++NINPN T ++GSC +H L L+S L F F + + +RF
Sbjct: 240 LNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLELHSEGTTVLLFQFGMNASSSRF 299
Query: 295 YLKEVNISMYLVNGS--VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRV 352
+L+ + ++ L + F AN +L A +G+SY CN E+ V V+ AF +N F + V
Sbjct: 300 FLQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHVRVTKAFSVNIFKVWV 359
Query: 353 QPFNVTQGKYSTAQDCSADDDNFLVPIAVGAALAGVLILVLLAYFIGLKHHHAGYE 408
Q F V G++ + ++C D+++ L+PIAVG ALAG++++VL+AY +G K HAGY+
Sbjct: 360 QAFKVEGGQFGSVEECLLDENSMLIPIAVGGALAGLVLIVLIAYLVGRKRSHAGYQ 415
>gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens]
Length = 416
Score = 98.2 bits (243), Expect = 1e-20
Identities = 65/222 (29%), Positives = 118/222 (53%), Gaps = 14/222 (6%)
Query: 194 TSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNITQDKVA---- 249
T T AP +TVP PT P P + G Y V NG+ C+ A MG+QL I QDK +
Sbjct: 202 TRTAAPA--STVPGPTLAPQPSSV-KTGIYQVLNGSRLCIKAEMGIQL-IVQDKESVFSP 257
Query: 250 -SVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVNISMYLVNG 308
NI+PN T ++G+C + + L LN +++ F K+E +Y+ EV + + +
Sbjct: 258 RRYFNIDPNATQASGNCGTRKSNLLLNFQG-GFVNLTFT-KDEESYYISEVGAYLTVSDP 315
Query: 309 -SVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQGKYSTAQD 367
+++ + + + +G S+ C EQ++ +S Q+ T D+++Q F+ + +
Sbjct: 316 ETIYQGIKHAVVMFQTAVGHSFKCVSEQSLQLSAHLQVKTTDVQLQAFDFEDDHFGNVDE 375
Query: 368 CSADDDNFLVPIAVGAALAGVLILVLLAYFIGLKHHHAGYEQ 409
CS+ D ++P+ +GA + G+ ++ + Y I L+ +GY++
Sbjct: 376 CSS-DYTIVLPV-IGAIVVGLCLMGMGVYKIRLRCQSSGYQR 415
>gi|91199550 CD68 antigen isoform B [Homo sapiens]
Length = 327
Score = 73.9 bits (180), Expect = 2e-13
Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 16/209 (7%)
Query: 202 HTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNI---TQ--DKVASVININP 256
H P P+ +P+P K G Y+ NG+ C+ +Q+ + TQ + + +NP
Sbjct: 112 HPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRVMYTTQGGGEAWGISVLNP 171
Query: 257 NTTHSTGSCR-SHTALLRLNSSTIKYLDFVFAVKNENR-----FYLKEVNISMYLVNGSV 310
N T GSC +H LL S +L F F + + + E N+S
Sbjct: 172 NKTKVQGSCEGAHPHLLL--SFPYGHLSFGFMQDLQQKVVYLSYMAVEYNVSFPHAAQWT 229
Query: 311 FSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQ-GKYSTAQDCS 369
FS N +L APLG S+ C+ ++ +S A ++ LR+Q + G + + C
Sbjct: 230 FSAQNASLRDLQAPLGQSFSCS-NSSIILSPAVHLDLLSLRLQAAQLPHTGVFGQSFSCP 288
Query: 370 ADDDNFLVPIAVGAALAGVLILVLLAYFI 398
+ D + L+P+ +G L G+L LVL+A+ I
Sbjct: 289 S-DRSILLPLIIGLILLGLLALVLIAFCI 316
>gi|91199548 CD68 antigen isoform A [Homo sapiens]
Length = 354
Score = 73.9 bits (180), Expect = 2e-13
Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 16/209 (7%)
Query: 202 HTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNI---TQ--DKVASVININP 256
H P P+ +P+P K G Y+ NG+ C+ +Q+ + TQ + + +NP
Sbjct: 139 HPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRVMYTTQGGGEAWGISVLNP 198
Query: 257 NTTHSTGSCR-SHTALLRLNSSTIKYLDFVFAVKNENR-----FYLKEVNISMYLVNGSV 310
N T GSC +H LL S +L F F + + + E N+S
Sbjct: 199 NKTKVQGSCEGAHPHLLL--SFPYGHLSFGFMQDLQQKVVYLSYMAVEYNVSFPHAAQWT 256
Query: 311 FSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQ-GKYSTAQDCS 369
FS N +L APLG S+ C+ ++ +S A ++ LR+Q + G + + C
Sbjct: 257 FSAQNASLRDLQAPLGQSFSCS-NSSIILSPAVHLDLLSLRLQAAQLPHTGVFGQSFSCP 315
Query: 370 ADDDNFLVPIAVGAALAGVLILVLLAYFI 398
+ D + L+P+ +G L G+L LVL+A+ I
Sbjct: 316 S-DRSILLPLIIGLILLGLLALVLIAFCI 343
>gi|63003910 ATPase, H+ transporting, lysosomal accessory protein
1-like [Homo sapiens]
Length = 224
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 21/113 (18%)
Query: 294 FYLKEVNISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNK-------------EQTVSVS 340
F L+ V I + N S+ ++ N Y AP G SY C + T S
Sbjct: 59 FSLRRVEI---ISNNSIQAVFNPTGVY--APSGYSYRCQRVGSLQQDQALLLPSDTDDGS 113
Query: 341 GAFQINTFDLRVQPFNVTQGKYSTAQDCSADDDNFLVPIAVGAALAGVLILVL 393
+++ D ++Q F + G+++ AQDC++ +F +G A++ +L+LVL
Sbjct: 114 SLWEVTFIDFQIQGFAIKGGRFTKAQDCAS---SFSPAFLIGLAMSLILLLVL 163
>gi|7110633 chromosome 20 open reading frame 103 precursor [Homo
sapiens]
Length = 280
Score = 37.7 bits (86), Expect = 0.019
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 315 NNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDL-----RVQPFN-VTQGKYSTAQDC 368
+++LS P G SY C +QT+S++ + T + +QPF+ ++ +S C
Sbjct: 166 SHHLSALVTPAGKSYECQAQQTISLASSDPQKTVTMILSAVHIQPFDIISDFVFSEEHKC 225
Query: 369 SADDDNFL---VPIAVGAALAGVLILVLLAYFIGLKHH 403
D+ L +P+ +G L V+++ L Y + HH
Sbjct: 226 PVDEREQLEETLPLILGLILGLVIMVTLAIYHV---HH 260
Score = 30.0 bits (66), Expect = 4.0
Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 15/134 (11%)
Query: 40 TCLYAKWQMNFTVRYETTNKTYKTVTISDHGTVTYNGSI----CGDDQNGPKIAVQFGPG 95
TCL A++ F V Y+ Y + G+ CG Q+ ++
Sbjct: 56 TCLMAEFAAKFIVPYDVWASNYVDLITEQADIALTRGAEVKGRCGHSQSELQV-FWVDRA 114
Query: 96 FSWIANFTKAA--------STYSIDSVSFSYNTGDNTTFPDAEDKGILTVD--ELLAIRI 145
++ F K + +T+ + V F Y++ + T F DA G T + L A+
Sbjct: 115 YALKMLFVKESHNMSKGPEATWRLSKVQFVYDSSEKTHFKDAVSAGKHTANSHHLSALVT 174
Query: 146 PLNDLFRCNSLSTL 159
P + C + T+
Sbjct: 175 PAGKSYECQAQQTI 188
>gi|119874201 furry-like [Homo sapiens]
Length = 3013
Score = 33.9 bits (76), Expect = 0.27
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 103 TKAASTYSIDSVSFSYN-TGDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEK 161
T + Y S + S N T T +E++ LT ++L+ LN S
Sbjct: 2463 TPSLQEYQCSSSTPSLNLTNQEDTDESSEEEAALTASQILSRTQMLN--------SDSAT 2514
Query: 162 NDVVQHYWDVLVQAFVQNGTVSTNEFLCDKDKTSTVAPTI---HTTVPSPTTTPTPKE 216
++ + + D+L+Q+ G+++T E L +D+T T+ ++ ++ +P TT+ +E
Sbjct: 2515 DETIPDHPDLLLQSEDSTGSITTEEVLQIRDETPTLEASLDNANSRLPEDTTSVLKEE 2572
>gi|59710093 G-protein coupled receptor 112 [Homo sapiens]
Length = 3080
Score = 33.9 bits (76), Expect = 0.27
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 172 LVQAFVQNGTVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTP----KEKPEAGTYSV-- 225
L V T ST+ +C K + P T V S T+TP + E TY++
Sbjct: 1128 LFSTSVDTVTPSTHTLVCSKPPPDNIPPASSTHVISTTSTPEATQPISQVEETSTYALSF 1187
Query: 226 ----NNGNDTCLLATMGLQLNITQDKVASVININPNTTHSTGSCRSHTALLRLNS 276
+ G LAT + ++ + S I+ N TT S S S +A R+++
Sbjct: 1188 PYTFSGGGVVASLATGTTETSVVDETTPSHISANKLTT-SVNSHISSSATYRVHT 1241
>gi|239757995 PREDICTED: similar to hCG1747327, partial [Homo sapiens]
Length = 1064
Score = 32.7 bits (73), Expect = 0.61
Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 27/132 (20%)
Query: 155 SLSTLEKNDVVQHYWDVLVQAFVQNGTVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTP 214
S++T + L + + + V + E + + +T T+ TT+P+ TT TP
Sbjct: 885 SMTTAASRPTTTNTLSSLTSSILSSTPVPSTEVITSQTTNTTSPSTLVTTLPTTITTSTP 944
Query: 215 KEKPEAGTYSVNNGND------------------------TCLLATMGLQLNITQDKVAS 250
+ T + D T L T G+ + T++ V +
Sbjct: 945 TSETTYSTSPTSTVTDSTTETTYSTSITGTLSTEISLPATTSSLITKGISMTSTRNLVTT 1004
Query: 251 VININPNTTHST 262
N NT+HST
Sbjct: 1005 T---NENTSHST 1013
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 31.2 bits (69), Expect = 1.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 194 TSTVAPTIHTTVPSPTTTPTP 214
T+ PTI TT P PTTTP+P
Sbjct: 1584 TTPSPPTITTTTPPPTTTPSP 1604
Score = 29.3 bits (64), Expect = 6.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 194 TSTVAPTIHTTVPSPTTTPTP 214
T+ PT TT P PTTTP+P
Sbjct: 1420 TTPSPPTTTTTTPPPTTTPSP 1440
Score = 29.3 bits (64), Expect = 6.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 194 TSTVAPTIHTTVPSPTTTPTP 214
T+ PT TT P PTTTP+P
Sbjct: 1482 TTPSPPTTTTTTPPPTTTPSP 1502
Score = 29.3 bits (64), Expect = 6.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 194 TSTVAPTIHTTVPSPTTTPTP 214
T+ PT TT P PTTTP+P
Sbjct: 1521 TTPSPPTTTTTTPPPTTTPSP 1541
Score = 29.3 bits (64), Expect = 6.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 194 TSTVAPTIHTTVPSPTTTPTP 214
T+ PT TT P PTTTP+P
Sbjct: 1600 TTPSPPTTTTTTPPPTTTPSP 1620
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 30.0 bits (66), Expect = 4.0
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 191 KDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNI--TQDKV 248
K TST P V P TTPTP++ T ++ N T +A LQ Q
Sbjct: 895 KKPTSTKKPKTMPRVRKPKTTPTPRKM----TSTMPELNPTSRIAEAMLQTTTRPNQTPN 950
Query: 249 ASVININPNTTHSTGS 264
+ ++ +NP + + G+
Sbjct: 951 SKLVEVNPKSEDAGGA 966
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 30.0 bits (66), Expect = 4.0
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 191 KDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNI--TQDKV 248
K TST P V P TTPTP++ T ++ N T +A LQ Q
Sbjct: 936 KKPTSTKKPKTMPRVRKPKTTPTPRKM----TSTMPELNPTSRIAEAMLQTTTRPNQTPN 991
Query: 249 ASVININPNTTHSTGS 264
+ ++ +NP + + G+
Sbjct: 992 SKLVEVNPKSEDAGGA 1007
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 30.0 bits (66), Expect = 4.0
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 191 KDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNI--TQDKV 248
K TST P V P TTPTP++ T ++ N T +A LQ Q
Sbjct: 988 KKPTSTKKPKTMPRVRKPKTTPTPRKM----TSTMPELNPTSRIAEAMLQTTTRPNQTPN 1043
Query: 249 ASVININPNTTHSTGS 264
+ ++ +NP + + G+
Sbjct: 1044 SKLVEVNPKSEDAGGA 1059
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 30.0 bits (66), Expect = 4.0
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 191 KDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNI--TQDKV 248
K TST P V P TTPTP++ T ++ N T +A LQ Q
Sbjct: 1029 KKPTSTKKPKTMPRVRKPKTTPTPRKM----TSTMPELNPTSRIAEAMLQTTTRPNQTPN 1084
Query: 249 ASVININPNTTHSTGS 264
+ ++ +NP + + G+
Sbjct: 1085 SKLVEVNPKSEDAGGA 1100
>gi|169210192 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 29.3 bits (64), Expect = 6.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 205 VPSPTTTPTPKEKPEAG 221
VP+PT TPTP + P AG
Sbjct: 142 VPAPTLTPTPPDPPRAG 158
>gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 29.3 bits (64), Expect = 6.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 205 VPSPTTTPTPKEKPEAG 221
VP+PT TPTP + P AG
Sbjct: 142 VPAPTLTPTPPDPPRAG 158
>gi|17136148 ATPase, H+ transporting, lysosomal accessory protein 1
precursor [Homo sapiens]
Length = 470
Score = 29.3 bits (64), Expect = 6.8
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 312 SIANNNLSYWDAPLGSSYMCNKEQTVSVSGA----------FQINTFDLRVQPFNVTQGK 361
S+A N S P S+ C ++S G+ +Q+ D ++Q FNV +
Sbjct: 352 SVAYFNASQVTGPSIYSFHCEYVSSLSKKGSLLVARTQPSPWQMMLQDFQIQAFNVMGEQ 411
Query: 362 YSTAQDCSADDDNFLVPIAVGAALAGVLILVLLAY 396
+S A DC+ +F P L + +L + Y
Sbjct: 412 FSYASDCA----SFFSPGIWMGLLTSLFMLFIFTY 442
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 28.9 bits (63), Expect = 8.8
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 194 TSTVAPTIHTTVPSPT-TTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNITQDKVA--- 249
T+T P + +T +PT T+ TP GT T ATM + + A
Sbjct: 2654 TATALPALRSTATTPTATSVTPIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETAHTS 2713
Query: 250 SVININPNTTHSTGS 264
+V+ TT +TGS
Sbjct: 2714 TVLTATATTTGATGS 2728
Score = 28.9 bits (63), Expect = 8.8
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 194 TSTVAPTIHTTVPSPTTTPTPKEKP----------EAGTYSVNNGNDTCLLATMGLQLNI 243
TSTV T TT + ++ TP P A T + G +T G +
Sbjct: 3688 TSTVLTTKATTTRATSSMSTPSSTPGTTWILTELTTAATTTAATGPTATPSSTPGTTWIL 3747
Query: 244 TQDKVASVININPNTTHSTGSCRSHTALLRLNSST 278
T+ + + + +T + S R+ L++ +ST
Sbjct: 3748 TEPSTTATVTVPTGSTATASSTRATAGTLKVLTST 3782
Score = 28.9 bits (63), Expect = 8.8
Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 17/176 (9%)
Query: 94 PGFSWI-ANFTKAASTYSIDSVSFSYNTGDNTTFPDAEDKGILTVDELLAIRIPLNDLFR 152
PG +WI T AA+T + + + ++ TT+ E TV +P
Sbjct: 3712 PGTTWILTELTTAATTTAATGPTATPSSTPGTTWILTEPSTTATVT------VPTG---- 3761
Query: 153 CNSLSTLEKNDVVQHYWDVLVQAFVQNGTVSTNEFLCDKDKTSTVAPTIHTTVPSPT-TT 211
S +T VL +S+ T+T P + +T +PT T+
Sbjct: 3762 --STATASSTRATAGTLKVLTSTATTPTVISSRATPSSSPGTATALPALRSTATTPTATS 3819
Query: 212 PTPKEKPEAGTYSVNNGNDTCLLATMGLQL-NITQDKV--ASVININPNTTHSTGS 264
T GT T ATM + T + V ++V+ TT +TGS
Sbjct: 3820 VTAIPSSSLGTAWTRLSQTTTPTATMSTATPSSTPETVHTSTVLTTTTTTTRATGS 3875
>gi|18641347 protein tyrosine phosphatase, receptor type, C isoform
1 precursor [Homo sapiens]
Length = 1304
Score = 28.9 bits (63), Expect = 8.8
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Query: 151 FRCNSLSTLEKNDVVQHYWDVLVQAFVQNGTVSTN--EFLCDKDKTSTVAPT-----IHT 203
F + +S L + H+ + A N T++ N + + +T+T++P+ T
Sbjct: 156 FPTDPVSPLTTTLSLAHHSSAALPARTSNTTITANTSDAYLNASETTTLSPSGSAVISTT 215
Query: 204 TVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNITQDKVASVININPNTTHSTG 263
T+ + + PT EK T +T L +LN+ ++ N H+
Sbjct: 216 TIATTPSKPTCDEKYANITVDYLYNKETKLFTA---KLNVNENVECGNNTCTNNEVHNLT 272
Query: 264 SCRSHTALLRLNSST 278
C++ + + NS T
Sbjct: 273 ECKNASVSISHNSCT 287
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 28.9 bits (63), Expect = 8.8
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 193 KTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNITQDKVASVI 252
+T+ PT T P+P ++P P+E A + N+ T T T SV
Sbjct: 279 ETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTSETSAAPTHQTTTSVT 338
Query: 253 NINPNTTHSTGS 264
T T +
Sbjct: 339 TQTTTTKQPTSA 350
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 28.9 bits (63), Expect = 8.8
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 193 KTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNITQDKVASVI 252
+T+ PT T P+P ++P P+E A + N+ T T T SV
Sbjct: 279 ETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTSETSAAPTHQTTTSVT 338
Query: 253 NINPNTTHSTGS 264
T T +
Sbjct: 339 TQTTTTKQPTSA 350
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 28.9 bits (63), Expect = 8.8
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 193 KTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNITQDKVASVI 252
+T+ PT T P+P ++P P+E A + N+ T T T SV
Sbjct: 279 ETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTSETSAAPTHQTTTSVT 338
Query: 253 NINPNTTHSTGS 264
T T +
Sbjct: 339 TQTTTTKQPTSA 350
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 28.9 bits (63), Expect = 8.8
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 194 TSTVAPTIHTTVPSPT-TTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNITQDKVA--- 249
T+T P + +T +PT T+ TP GT T ATM + + A
Sbjct: 1964 TATALPALRSTATTPTATSVTPIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETAHTS 2023
Query: 250 SVININPNTTHSTGS 264
+V+ TT +TGS
Sbjct: 2024 TVLTATATTTGATGS 2038
Score = 28.9 bits (63), Expect = 8.8
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 194 TSTVAPTIHTTVPSPTTTPTPKEKP----------EAGTYSVNNGNDTCLLATMGLQLNI 243
TSTV T TT + ++ TP P A T + G +T G +
Sbjct: 3108 TSTVLTTKATTTRATSSMSTPSSTPGTTWILTELTTAATTTAATGPTATPSSTPGTTWIL 3167
Query: 244 TQDKVASVININPNTTHSTGSCRSHTALLRLNSST 278
T+ + + + +T + S R+ L++ +ST
Sbjct: 3168 TEPSTTATVTVPTGSTATASSTRATAGTLKVLTST 3202
Score = 28.9 bits (63), Expect = 8.8
Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 17/176 (9%)
Query: 94 PGFSWI-ANFTKAASTYSIDSVSFSYNTGDNTTFPDAEDKGILTVDELLAIRIPLNDLFR 152
PG +WI T AA+T + + + ++ TT+ E TV +P
Sbjct: 3132 PGTTWILTELTTAATTTAATGPTATPSSTPGTTWILTEPSTTATVT------VPTG---- 3181
Query: 153 CNSLSTLEKNDVVQHYWDVLVQAFVQNGTVSTNEFLCDKDKTSTVAPTIHTTVPSPT-TT 211
S +T VL +S+ T+T P + +T +PT T+
Sbjct: 3182 --STATASSTRATAGTLKVLTSTATTPTVISSRATPSSSPGTATALPALRSTATTPTATS 3239
Query: 212 PTPKEKPEAGTYSVNNGNDTCLLATMGLQL-NITQDKV--ASVININPNTTHSTGS 264
T GT T ATM + T + V ++V+ TT +TGS
Sbjct: 3240 VTAIPSSSLGTAWTRLSQTTTPTATMSTATPSSTPETVHTSTVLTTTTTTTRATGS 3295
>gi|148613886 regulatory factor X domain containing 2 [Homo sapiens]
Length = 1460
Score = 28.9 bits (63), Expect = 8.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 201 IHTTVPSPTTTPTPKEKP 218
IHT P+PT TPTP P
Sbjct: 945 IHTPTPTPTPTPTPTPTP 962
>gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo
sapiens]
Length = 954
Score = 28.9 bits (63), Expect = 8.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 190 DKDKTSTVAPTIHTTVPSPTTTPTPKEKP 218
D D+ + AP+ + P+PT TP+P P
Sbjct: 765 DSDEAAPAAPSPPPSPPAPTPTPSPSTNP 793
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,514,871
Number of Sequences: 37866
Number of extensions: 671338
Number of successful extensions: 2963
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2310
Number of HSP's gapped (non-prelim): 659
length of query: 410
length of database: 18,247,518
effective HSP length: 105
effective length of query: 305
effective length of database: 14,271,588
effective search space: 4352834340
effective search space used: 4352834340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.