Guide to the Human Genome
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Name: ATP6AP1 Sequence: fasta or formatted (470aa) NCBI GI: 17136148
Description:

ATPase, H+ transporting, lysosomal accessory protein 1 precursor

Referenced in:

Lysosomes and Related Organelles

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         49           9
 C cysteine            0.6          3           1
 D aspartate           4.9         23           2
 E glutamate           3.6         17           1
 F phenylalanine       5.3         25           2
 G glycine             5.1         24           2
 H histidine           1.9          9           1
 I isoleucine          3.0         14           1
 K lysine              2.6         12           2
 L leucine            13.8         65           3
 M methionine          3.0         14           2
 N asparagine          3.0         14           1
 P proline             5.7         27           2
 Q glutamine           4.7         22           2
 R arginine            4.5         21           1
 S serine              8.9         42           2
 T threonine           6.4         30           2
 V valine              7.0         33           2
 W tryptophan          2.3         11           1
 Y tyrosine            3.2         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase, H+ transporting, lysosomal accessory protein... 
ATP6AP1L              0.083   ATPase, H+ transporting, lysosomal accessory protein...
POMP                  0.007   proteasome maturation protein 
ERCC3                 0.005   excision repair cross-complementing rodent repair def...
MTFMT                 0.005   mitochondrial methionyl-tRNA formyltransferase prec...
KIAA0907              0.005   hypothetical protein LOC22889 
LOC100133756          0.004   PREDICTED: hypothetical protein, partial 
LAMP2                 0.004   lysosomal-associated membrane protein 2 isoform A pre...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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