Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4504859
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504859 intermediate conductance calcium-activated potassium
channel protein 1 [Homo sapiens]
(427 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504859 intermediate conductance calcium-activated potassium ... 855 0.0
gi|116805330 small conductance calcium-activated potassium chann... 340 1e-93
gi|25777645 small conductance calcium-activated potassium channe... 335 4e-92
gi|25777643 potassium intermediate/small conductance calcium-act... 332 3e-91
gi|25777650 small conductance calcium-activated potassium channe... 320 2e-87
gi|25777647 small conductance calcium-activated potassium channe... 187 1e-47
gi|32479525 potassium voltage-gated channel, KQT-like subfamily,... 56 7e-08
gi|32479527 potassium voltage-gated channel, KQT-like subfamily,... 56 7e-08
gi|26638655 potassium voltage-gated channel KQT-like protein 4 i... 52 1e-06
gi|26638653 potassium voltage-gated channel KQT-like protein 4 i... 52 1e-06
gi|4758630 potassium voltage-gated channel KQT-like protein 3 [H... 51 2e-06
gi|45383011 potassium voltage-gated channel, delayed-rectifier, ... 50 3e-06
gi|25952087 potassium voltage-gated channel, shaker-related subf... 49 7e-06
gi|27436974 potassium voltage-gated channel, Shab-related subfam... 49 9e-06
gi|236462242 potassium voltage-gated channel, KQT-like subfamily... 48 1e-05
gi|4826784 potassium voltage-gated channel, Shab-related subfami... 48 2e-05
gi|236461942 potassium voltage-gated channel, KQT-like subfamily... 47 3e-05
gi|26051268 potassium voltage-gated channel KQT-like protein 2 i... 47 3e-05
gi|26051262 potassium voltage-gated channel KQT-like protein 2 i... 47 3e-05
gi|26051264 potassium voltage-gated channel KQT-like protein 2 i... 47 3e-05
gi|26051260 potassium voltage-gated channel KQT-like protein 2 i... 47 3e-05
gi|26051266 potassium voltage-gated channel KQT-like protein 2 i... 47 3e-05
gi|236462079 potassium voltage-gated channel, KQT-like subfamily... 47 3e-05
gi|236461719 potassium voltage-gated channel, KQT-like subfamily... 47 3e-05
gi|28373065 potassium voltage-gated channel, KQT-like subfamily,... 47 3e-05
gi|119395748 potassium voltage-gated channel subfamily A member ... 47 3e-05
gi|25952108 potassium voltage-gated channel delayed-rectifier pr... 46 6e-05
gi|4826782 potassium voltage-gated channel, shaker-related subfa... 46 6e-05
gi|88758565 potassium voltage-gated channel, shaker-related subf... 46 7e-05
gi|4504817 potassium voltage-gated channel, shaker-related subfa... 45 2e-04
>gi|4504859 intermediate conductance calcium-activated potassium
channel protein 1 [Homo sapiens]
Length = 427
Score = 855 bits (2210), Expect = 0.0
Identities = 427/427 (100%), Positives = 427/427 (100%)
Query: 1 MGGDLVLGLGALRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFL 60
MGGDLVLGLGALRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFL
Sbjct: 1 MGGDLVLGLGALRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFL 60
Query: 61 VKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPA 120
VKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPA
Sbjct: 61 VKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPA 120
Query: 121 PVRGPPCVQDLGAPLTSPQPWPGFLGQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYR 180
PVRGPPCVQDLGAPLTSPQPWPGFLGQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYR
Sbjct: 121 PVRGPPCVQDLGAPLTSPQPWPGFLGQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYR 180
Query: 181 SIGALNQVRFRHWFVAKLYMNTHPGRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSDT 240
SIGALNQVRFRHWFVAKLYMNTHPGRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSDT
Sbjct: 181 SIGALNQVRFRHWFVAKLYMNTHPGRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSDT 240
Query: 241 LWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKHVHN 300
LWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKHVHN
Sbjct: 241 LWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKHVHN 300
Query: 301 FMMDIQYTKEMKESAARVLQEAWMFYKHTRRKESHAARRHQRKLLAAINAFRQVRLKHRK 360
FMMDIQYTKEMKESAARVLQEAWMFYKHTRRKESHAARRHQRKLLAAINAFRQVRLKHRK
Sbjct: 301 FMMDIQYTKEMKESAARVLQEAWMFYKHTRRKESHAARRHQRKLLAAINAFRQVRLKHRK 360
Query: 361 LREQVNSMVDISKMHMILYDLQQNLSSSHRALEKQIDTLAGKLDALTELLSTALGPRQLP 420
LREQVNSMVDISKMHMILYDLQQNLSSSHRALEKQIDTLAGKLDALTELLSTALGPRQLP
Sbjct: 361 LREQVNSMVDISKMHMILYDLQQNLSSSHRALEKQIDTLAGKLDALTELLSTALGPRQLP 420
Query: 421 EPSQQSK 427
EPSQQSK
Sbjct: 421 EPSQQSK 427
>gi|116805330 small conductance calcium-activated potassium channel
protein 3 isoform a [Homo sapiens]
Length = 731
Score = 340 bits (873), Expect = 1e-93
Identities = 188/405 (46%), Positives = 256/405 (63%), Gaps = 16/405 (3%)
Query: 12 LRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFL 71
L R+ L E+ K L+ +AL+ GI +MV+ E+ W +++ +KC IS+ST +
Sbjct: 270 LGHRRALFEKRKRLSDYALIFGMFGIVVMVIETELSWGLYSKDSMFSLALKCLISLSTII 329
Query: 72 LLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVRGPPCVQDL 131
LL LI+A+H +EVQLF+ DNG DWR+A+T + I LE++VC +HP P +
Sbjct: 330 LLGLIIAYHTREVQLFVIDNGADDWRIAMTYERILYISLEMLVCAIHPIP-------GEY 382
Query: 132 GAPLTSPQPWPGFLGQGEA----LLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQ 187
T+ + + EA +LS+ M LRLYL+ R +LL S + +AS RSIGALN+
Sbjct: 383 KFFWTARLAFSYTPSRAEADVDIILSIPMFLRLYLIARVMLLHSKLFTDASSRSIGALNK 442
Query: 188 VRFRHWFVAKLYMNTHPGRLLLGLTLGLWLTTAWVLSVAER--QAVNATGHLSDTLWLIP 245
+ F FV K M PG +LL ++ LW+ AW + V ER + T + +WLI
Sbjct: 443 INFNTRFVMKTLMTICPGTVLLVFSISLWIIAAWTVRVCERYHDQQDVTSNFLGAMWLIS 502
Query: 246 ITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKHVHNFMMDI 305
ITFL+IGYGD+VP T GK VCL TG+MG CTAL+VAVVARKLE KAEKHVHNFMMD
Sbjct: 503 ITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDT 562
Query: 306 QYTKEMKESAARVLQEAWMFYKHTR--RKESHA-ARRHQRKLLAAINAFRQVRLKHRKLR 362
Q TK +K +AA VL+E W+ YKHT+ +K HA R+HQRK L AI+ R V+++ RKL
Sbjct: 563 QLTKRIKNAAANVLRETWLIYKHTKLLKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLS 622
Query: 363 EQVNSMVDISKMHMILYDLQQNLSSSHRALEKQIDTLAGKLDALT 407
+Q N++VD+SKM ++YDL L+ LEKQI +L KL+ LT
Sbjct: 623 DQANTLVDLSKMQNVMYDLITELNDRSEDLEKQIGSLESKLEHLT 667
>gi|25777645 small conductance calcium-activated potassium channel
protein 2 isoform a [Homo sapiens]
Length = 579
Score = 335 bits (860), Expect = 4e-92
Identities = 183/400 (45%), Positives = 249/400 (62%), Gaps = 8/400 (2%)
Query: 12 LRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFL 71
L R+ L E+ K L+ +AL+ GI +MV+ E+ W +LY +KC IS+ST +
Sbjct: 121 LGHRRALFEKRKRLSDYALIFGMFGIVVMVIETELSWGAYDKASLYSLALKCLISLSTII 180
Query: 72 LLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVRGPPCVQDL 131
LL LI+ +HA+E+QLFM DNG DWR+A+T + I LE++VC +HP P
Sbjct: 181 LLGLIIVYHAREIQLFMVDNGADDWRIAMTYERIFFICLEILVCAIHPIPGN---YTFTW 237
Query: 132 GAPLTSPQPWPGFLGQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQVRFR 191
A L + +LS+ M LRLYL+ R +LL S + +AS RSIGALN++ F
Sbjct: 238 TARLAFSYAPSTTTADVDIILSIPMFLRLYLIARVMLLHSKLFTDASSRSIGALNKINFN 297
Query: 192 HWFVAKLYMNTHPGRLLLGLTLGLWLTTAWVLSVAER--QAVNATGHLSDTLWLIPITFL 249
FV K M PG +LL ++ LW+ AW + ER + T + +WLI ITFL
Sbjct: 298 TRFVMKTLMTICPGTVLLVFSISLWIIAAWTVRACERYHDQQDVTSNFLGAMWLISITFL 357
Query: 250 TIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKHVHNFMMDIQYTK 309
+IGYGD+VP T GK VCL TG+MG CTAL+VAVVARKLE KAEKHVHNFMMD Q TK
Sbjct: 358 SIGYGDMVPNTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTK 417
Query: 310 EMKESAARVLQEAWMFYKHTR--RKESHA-ARRHQRKLLAAINAFRQVRLKHRKLREQVN 366
+K +AA VL+E W+ YK+T+ +K HA R+HQRK L AI+ R V+++ RKL +Q N
Sbjct: 418 RVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLNDQAN 477
Query: 367 SMVDISKMHMILYDLQQNLSSSHRALEKQIDTLAGKLDAL 406
++VD++K I+YD+ +L+ EK+I TL KL+ L
Sbjct: 478 TLVDLAKTQNIMYDMISDLNERSEDFEKRIVTLETKLETL 517
>gi|25777643 potassium intermediate/small conductance
calcium-activated channel, subfamily N, member 1 [Homo
sapiens]
Length = 543
Score = 332 bits (852), Expect = 3e-91
Identities = 186/412 (45%), Positives = 248/412 (60%), Gaps = 11/412 (2%)
Query: 12 LRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFL 71
L R+ L E+ K L+ +AL+ GI +MV E+ W +LY F +KC IS+ST +
Sbjct: 93 LGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESLYSFALKCLISLSTAI 152
Query: 72 LLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVRGPPCVQDL 131
LL L+V +HA+E+QLFM DNG DWR+A+T + I LEL VC +HP P
Sbjct: 153 LLGLVVLYHAREIQLFMVDNGADDWRIAMTCERVFLISLELAVCAIHPVPGHYRFTWTAR 212
Query: 132 GAPLTSPQPWPGFLGQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQVRFR 191
A +P + + LLS+ M LRLYL+ R +LL S + +AS RSIGALN++ F
Sbjct: 213 LAFTYAPSVAEADV---DVLLSIPMFLRLYLLGRVMLLHSKIFTDASSRSIGALNKITFN 269
Query: 192 HWFVAKLYMNTHPGRLLLGLTLGLWLTTAWVLSVAER--QAVNATGHLSDTLWLIPITFL 249
FV K M PG +LL ++ W+ AW + V ER T + +WLI ITFL
Sbjct: 270 TRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFL 329
Query: 250 TIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKHVHNFMMDIQYTK 309
+IGYGD+VP T GK VCL TG+MG CTAL+VAVVARKLE KAEKHVHNFMMD Q TK
Sbjct: 330 SIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTK 389
Query: 310 EMKESAARVLQEAWMFYKHTR---RKESHAARRHQRKLLAAIN---AFRQVRLKHRKLRE 363
+K +AA VL+E W+ YKHTR + + R+HQRK L AI+ R V+++ KL +
Sbjct: 390 RVKNAAANVLRETWLIYKHTRLVKKPDQARVRKHQRKFLQAIHQAQKLRSVKIEQGKLND 449
Query: 364 QVNSMVDISKMHMILYDLQQNLSSSHRALEKQIDTLAGKLDALTELLSTALG 415
Q N++ D++K ++YDL L + H LE ++ TL +LDAL L G
Sbjct: 450 QANTLTDLAKTQTVMYDLVSELHAQHEELEARLATLESRLDALGASLQALPG 501
>gi|25777650 small conductance calcium-activated potassium channel
protein 3 isoform b [Homo sapiens]
Length = 426
Score = 320 bits (819), Expect = 2e-87
Identities = 174/362 (48%), Positives = 234/362 (64%), Gaps = 16/362 (4%)
Query: 55 ALYLFLVKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVV 114
+++ +KC IS+ST +LL LI+A+H +EVQLF+ DNG DWR+A+T + I LE++V
Sbjct: 8 SMFSLALKCLISLSTIILLGLIIAYHTREVQLFVIDNGADDWRIAMTYERILYISLEMLV 67
Query: 115 CGLHPAPVRGPPCVQDLGAPLTSPQPWPGFLGQGEA----LLSLAMLLRLYLVPRAVLLR 170
C +HP P + T+ + + EA +LS+ M LRLYL+ R +LL
Sbjct: 68 CAIHPIP-------GEYKFFWTARLAFSYTPSRAEADVDIILSIPMFLRLYLIARVMLLH 120
Query: 171 SGVLLNASYRSIGALNQVRFRHWFVAKLYMNTHPGRLLLGLTLGLWLTTAWVLSVAER-- 228
S + +AS RSIGALN++ F FV K M PG +LL ++ LW+ AW + V ER
Sbjct: 121 SKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISLWIIAAWTVRVCERYH 180
Query: 229 QAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARK 288
+ T + +WLI ITFL+IGYGD+VP T GK VCL TG+MG CTAL+VAVVARK
Sbjct: 181 DQQDVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARK 240
Query: 289 LEFNKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFYKHTR--RKESHA-ARRHQRKLL 345
LE KAEKHVHNFMMD Q TK +K +AA VL+E W+ YKHT+ +K HA R+HQRK L
Sbjct: 241 LELTKAEKHVHNFMMDTQLTKRIKNAAANVLRETWLIYKHTKLLKKIDHAKVRKHQRKFL 300
Query: 346 AAINAFRQVRLKHRKLREQVNSMVDISKMHMILYDLQQNLSSSHRALEKQIDTLAGKLDA 405
AI+ R V+++ RKL +Q N++VD+SKM ++YDL L+ LEKQI +L KL+
Sbjct: 301 QAIHQLRSVKMEQRKLSDQANTLVDLSKMQNVMYDLITELNDRSEDLEKQIGSLESKLEH 360
Query: 406 LT 407
LT
Sbjct: 361 LT 362
>gi|25777647 small conductance calcium-activated potassium channel
protein 2 isoform b [Homo sapiens]
Length = 231
Score = 187 bits (476), Expect = 1e-47
Identities = 95/169 (56%), Positives = 123/169 (72%), Gaps = 3/169 (1%)
Query: 241 LWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKHVHN 300
+WLI ITFL+IGYGD+VP T GK VCL TG+MG CTAL+VAVVARKLE KAEKHVHN
Sbjct: 1 MWLISITFLSIGYGDMVPNTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHN 60
Query: 301 FMMDIQYTKEMKESAARVLQEAWMFYKHTR--RKESHA-ARRHQRKLLAAINAFRQVRLK 357
FMMD Q TK +K +AA VL+E W+ YK+T+ +K HA R+HQRK L AI+ R V+++
Sbjct: 61 FMMDTQLTKRVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKME 120
Query: 358 HRKLREQVNSMVDISKMHMILYDLQQNLSSSHRALEKQIDTLAGKLDAL 406
RKL +Q N++VD++K I+YD+ +L+ EK+I TL KL+ L
Sbjct: 121 QRKLNDQANTLVDLAKTQNIMYDMISDLNERSEDFEKRIVTLETKLETL 169
>gi|32479525 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 2 [Homo sapiens]
Length = 549
Score = 55.8 bits (133), Expect = 7e-08
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 173 VLLNASYRSIGALNQVRFRH-------WFVAKLYMNTHPGRLLLGLTLGLW--LTTAWVL 223
V ++ R I L +R H W + + H L+ L +G + +++ +
Sbjct: 94 VFATSAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFV 153
Query: 224 SVAERQAVNATGHL-----SDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCT 278
+AE+ AVN +G + +D LW +T TIGYGD VP T GK + C V +
Sbjct: 154 YLAEKDAVNESGRVEFGSYADALWWGVVTVTTIGYGDKVPQTWVGKTIASCFSVFAISFF 213
Query: 279 ALLVAVV----ARKLEFNKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFY 326
AL ++ A K++ + +KH + + +AA ++Q AW Y
Sbjct: 214 ALPAGILGSGFALKVQQKQRQKHFNRQI----------PAAASLIQTAWRCY 255
>gi|32479527 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 1 [Homo sapiens]
Length = 676
Score = 55.8 bits (133), Expect = 7e-08
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 173 VLLNASYRSIGALNQVRFRH-------WFVAKLYMNTHPGRLLLGLTLGLW--LTTAWVL 223
V ++ R I L +R H W + + H L+ L +G + +++ +
Sbjct: 221 VFATSAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFV 280
Query: 224 SVAERQAVNATGHL-----SDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCT 278
+AE+ AVN +G + +D LW +T TIGYGD VP T GK + C V +
Sbjct: 281 YLAEKDAVNESGRVEFGSYADALWWGVVTVTTIGYGDKVPQTWVGKTIASCFSVFAISFF 340
Query: 279 ALLVAVV----ARKLEFNKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFY 326
AL ++ A K++ + +KH + + +AA ++Q AW Y
Sbjct: 341 ALPAGILGSGFALKVQQKQRQKHFNRQI----------PAAASLIQTAWRCY 382
>gi|26638655 potassium voltage-gated channel KQT-like protein 4
isoform b [Homo sapiens]
Length = 641
Score = 51.6 bits (122), Expect = 1e-06
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 178 SYRSIGALNQVRFRH----WFVAKLYMNTHPGRLLLGLTLG--LWLTTAWVLSVAERQAV 231
S R + L VR W + + H L+ +G + + ++++ +AE+ A
Sbjct: 205 SMRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFASFLVYLAEKDAN 264
Query: 232 NATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEF 291
+ +D+LW IT TIGYGD P T G+++ ++G+ AL ++
Sbjct: 265 SDFSSYADSLWWGTITLTTIGYGDKTPHTWLGRVLAAGFALLGISFFALPAGILGSGFAL 324
Query: 292 NKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFY 326
E+H ++ ++ + AA ++Q AW Y
Sbjct: 325 KVQEQHRQ------KHFEKRRMPAANLIQAAWRLY 353
>gi|26638653 potassium voltage-gated channel KQT-like protein 4
isoform a [Homo sapiens]
Length = 695
Score = 51.6 bits (122), Expect = 1e-06
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 178 SYRSIGALNQVRFRH----WFVAKLYMNTHPGRLLLGLTLG--LWLTTAWVLSVAERQAV 231
S R + L VR W + + H L+ +G + + ++++ +AE+ A
Sbjct: 205 SMRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFASFLVYLAEKDAN 264
Query: 232 NATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEF 291
+ +D+LW IT TIGYGD P T G+++ ++G+ AL ++
Sbjct: 265 SDFSSYADSLWWGTITLTTIGYGDKTPHTWLGRVLAAGFALLGISFFALPAGILGSGFAL 324
Query: 292 NKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFY 326
E+H ++ ++ + AA ++Q AW Y
Sbjct: 325 KVQEQHRQ------KHFEKRRMPAANLIQAAWRLY 353
>gi|4758630 potassium voltage-gated channel KQT-like protein 3 [Homo
sapiens]
Length = 872
Score = 50.8 bits (120), Expect = 2e-06
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 25/195 (12%)
Query: 151 LLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQVRFRH-------WFVAKLYMNTH 203
L L + + + VP + G +L S RS+ L +R W + + H
Sbjct: 198 LCMLDIFVLIASVPVVAVGNQGNVLATSLRSLRFLQILRMLRMDRRGGTWKLLGSAICAH 257
Query: 204 PGRLLLGLTLGLW--LTTAWVLSVAERQA--VNATGH--------LSDTLWLIPITFLTI 251
L+ +G + +++++ + E+ V+A G +D LW IT TI
Sbjct: 258 SKELITAWYIGFLTLILSSFLVYLVEKDVPEVDAQGEEMKEEFETYADALWWGLITLATI 317
Query: 252 GYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKHVHNFMMDIQYTKEM 311
GYGD P T G+++ ++GV AL ++ L E+H ++ ++
Sbjct: 318 GYGDKTPKTWEGRLIAATFSLIGVSFFALPAGILGSGLALKVQEQHRQ------KHFEKR 371
Query: 312 KESAARVLQEAWMFY 326
++ AA ++Q AW +Y
Sbjct: 372 RKPAAELIQAAWRYY 386
>gi|45383011 potassium voltage-gated channel, delayed-rectifier,
subfamily S, member 2 [Homo sapiens]
Length = 477
Score = 50.4 bits (119), Expect = 3e-06
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 199 YMNTHPGRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVP 258
Y G LLL L++G+ + + ++ E++ + W ++ T+GYGDVVP
Sbjct: 324 YSYKEVGLLLLYLSVGISIFSVVAYTI-EKEENEGLATIPACWWWATVSMTTVGYGDVVP 382
Query: 259 GTMWGKIVCLCTGVMGVCCTALLVAVVARKL-EFNKAEKHVHNFMMDIQYTKEMKESAAR 317
GT GK+ + G+ L + ++ K F + +K + + M + MKE +
Sbjct: 383 GTTAGKLTASACILAGILVVVLPITLIFNKFSHFYRRQKQLESAMRSCDFGDGMKEVPSV 442
Query: 318 VLQEAWMFYKH 328
L++ +Y H
Sbjct: 443 NLRD---YYAH 450
>gi|25952087 potassium voltage-gated channel, shaker-related
subfamily, member 5 [Homo sapiens]
Length = 613
Score = 49.3 bits (116), Expect = 7e-06
Identities = 52/172 (30%), Positives = 74/172 (43%), Gaps = 33/172 (19%)
Query: 131 LGAPLTSPQPWPGFLGQ-GEALLSLAML--LRLYLVPRAVLLRS--------GVLLNASY 179
LG L QP G GQ G+ +SLA+L +RL V R L G L AS
Sbjct: 372 LGTELAEQQPGGGGGGQNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGKTLQASM 431
Query: 180 RSIGALNQVRFRHWFVAKLYMNTHPGRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSD 239
R +G L + F L +G+ L ++A + A+ Q + + + D
Sbjct: 432 RELGLL--IFF----------------LFIGVIL---FSSAVYFAEADNQGTHFSS-IPD 469
Query: 240 TLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEF 291
W +T T+GYGD+ P T+ GKIV + GV AL V V+ +
Sbjct: 470 AFWWAVVTMTTVGYGDMRPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 521
>gi|27436974 potassium voltage-gated channel, Shab-related
subfamily, member 2 [Homo sapiens]
Length = 911
Score = 48.9 bits (115), Expect = 9e-06
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 205 GRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGK 264
G L+L L +G+ + ++ V + + + + W IT T+GYGD+ P T+ GK
Sbjct: 336 GLLILFLAMGIMIFSSLVFFAEKDEDATKFTSIPASFWWATITMTTVGYGDIYPKTLLGK 395
Query: 265 IVCLCTGVMGVCCTALLVAVVARKL-EFNKAEK 296
IV + GV AL + ++ EF K +K
Sbjct: 396 IVGGLCCIAGVLVIALPIPIIVNNFSEFYKEQK 428
>gi|236462242 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 5 [Homo sapiens]
Length = 822
Score = 48.1 bits (113), Expect = 1e-05
Identities = 51/250 (20%), Positives = 99/250 (39%), Gaps = 40/250 (16%)
Query: 178 SYRSIGALNQVRFRH----WFVAKLYMNTHPGRLLLGLTLG--LWLTTAWVLSVAERQAV 231
S R + L VR W + + H L+ +G + + +++++ + E+ A
Sbjct: 233 SLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDAN 292
Query: 232 NATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEF 291
+D LW IT TIGYGD P T G+++ ++G+ AL ++
Sbjct: 293 KEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFAL 352
Query: 292 NKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFYKHTRRKESHAARRHQRKLLAAINAF 351
E+H ++ ++ + AA ++Q W Y + S A + K L +
Sbjct: 353 KVQEQHRQ------KHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPT 406
Query: 352 RQVRLKHRKLREQVNSMVDISKMHMI------------LYDLQQNLSSSH-------RAL 392
+ +EQ + I K H+ + D+ + S+ H ++L
Sbjct: 407 K---------KEQGEASSRIMKFHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSL 457
Query: 393 EKQIDTLAGK 402
+ ++D + GK
Sbjct: 458 QTRVDQILGK 467
>gi|4826784 potassium voltage-gated channel, Shab-related subfamily,
member 1 [Homo sapiens]
Length = 858
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 205 GRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGK 264
G L+L L +G+ + ++ V + + + + W IT T+GYGD+ P T+ GK
Sbjct: 332 GLLILFLAMGIMIFSSLVFFAEKDEDDTKFKSIPASFWWATITMTTVGYGDIYPKTLLGK 391
Query: 265 IVCLCTGVMGVCCTALLVAVVARKL-EFNKAEK 296
IV + GV AL + ++ EF K +K
Sbjct: 392 IVGGLCCIAGVLVIALPIPIIVNNFSEFYKEQK 424
>gi|236461942 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 3 [Homo sapiens]
Length = 942
Score = 47.4 bits (111), Expect = 3e-05
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 12/203 (5%)
Query: 178 SYRSIGALNQVRFRH----WFVAKLYMNTHPGRLLLGLTLG--LWLTTAWVLSVAERQAV 231
S R + L VR W + + H L+ +G + + +++++ + E+ A
Sbjct: 233 SLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDAN 292
Query: 232 NATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEF 291
+D LW IT TIGYGD P T G+++ ++G+ AL ++
Sbjct: 293 KEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFAL 352
Query: 292 NKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFYKHTRRKESHAARRHQRKLLAAINAF 351
E+H ++ ++ + AA ++Q W Y + S A + K L +
Sbjct: 353 KVQEQHRQ------KHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPT 406
Query: 352 RQVRLKHRKLREQVNSMVDISKM 374
+ +KL S K+
Sbjct: 407 NKFCSNKQKLFRMYTSRKQSQKL 429
>gi|26051268 potassium voltage-gated channel KQT-like protein 2
isoform e [Homo sapiens]
Length = 393
Score = 47.4 bits (111), Expect = 3e-05
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 217 LTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVC 276
+ ++++ +AE+ + +D LW IT TIGYGD P T G+++ ++GV
Sbjct: 244 ILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVS 303
Query: 277 CTALLVAVVARKLEFNKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFY 326
AL ++ E+H ++ ++ + AA ++Q AW FY
Sbjct: 304 FFALPAGILGSGFALKVQEQHRQ------KHFEKRRNPAAGLIQSAWRFY 347
>gi|26051262 potassium voltage-gated channel KQT-like protein 2
isoform b [Homo sapiens]
Length = 854
Score = 47.4 bits (111), Expect = 3e-05
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 217 LTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVC 276
+ ++++ +AE+ + +D LW IT TIGYGD P T G+++ ++GV
Sbjct: 244 ILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVS 303
Query: 277 CTALLVAVVARKLEFNKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFY 326
AL ++ E+H ++ ++ + AA ++Q AW FY
Sbjct: 304 FFALPAGILGSGFALKVQEQHRQ------KHFEKRRNPAAGLIQSAWRFY 347
>gi|26051264 potassium voltage-gated channel KQT-like protein 2
isoform a [Homo sapiens]
Length = 872
Score = 47.4 bits (111), Expect = 3e-05
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 217 LTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVC 276
+ ++++ +AE+ + +D LW IT TIGYGD P T G+++ ++GV
Sbjct: 244 ILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVS 303
Query: 277 CTALLVAVVARKLEFNKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFY 326
AL ++ E+H ++ ++ + AA ++Q AW FY
Sbjct: 304 FFALPAGILGSGFALKVQEQHRQ------KHFEKRRNPAAGLIQSAWRFY 347
>gi|26051260 potassium voltage-gated channel KQT-like protein 2
isoform c [Homo sapiens]
Length = 844
Score = 47.4 bits (111), Expect = 3e-05
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 217 LTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVC 276
+ ++++ +AE+ + +D LW IT TIGYGD P T G+++ ++GV
Sbjct: 244 ILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVS 303
Query: 277 CTALLVAVVARKLEFNKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFY 326
AL ++ E+H ++ ++ + AA ++Q AW FY
Sbjct: 304 FFALPAGILGSGFALKVQEQHRQ------KHFEKRRNPAAGLIQSAWRFY 347
>gi|26051266 potassium voltage-gated channel KQT-like protein 2
isoform d [Homo sapiens]
Length = 841
Score = 47.4 bits (111), Expect = 3e-05
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 217 LTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVC 276
+ ++++ +AE+ + +D LW IT TIGYGD P T G+++ ++GV
Sbjct: 244 ILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVS 303
Query: 277 CTALLVAVVARKLEFNKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFY 326
AL ++ E+H ++ ++ + AA ++Q AW FY
Sbjct: 304 FFALPAGILGSGFALKVQEQHRQ------KHFEKRRNPAAGLIQSAWRFY 347
>gi|236462079 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 4 [Homo sapiens]
Length = 951
Score = 47.0 bits (110), Expect = 3e-05
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 12/174 (6%)
Query: 178 SYRSIGALNQVRFRH----WFVAKLYMNTHPGRLLLGLTLG--LWLTTAWVLSVAERQAV 231
S R + L VR W + + H L+ +G + + +++++ + E+ A
Sbjct: 233 SLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDAN 292
Query: 232 NATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEF 291
+D LW IT TIGYGD P T G+++ ++G+ AL ++
Sbjct: 293 KEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFAL 352
Query: 292 NKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFYKHTRRKESHAARRHQRKLL 345
E+H ++ ++ + AA ++Q W Y + S A + K L
Sbjct: 353 KVQEQHRQ------KHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKAL 400
>gi|236461719 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 2 [Homo sapiens]
Length = 923
Score = 47.0 bits (110), Expect = 3e-05
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 12/174 (6%)
Query: 178 SYRSIGALNQVRFRH----WFVAKLYMNTHPGRLLLGLTLG--LWLTTAWVLSVAERQAV 231
S R + L VR W + + H L+ +G + + +++++ + E+ A
Sbjct: 233 SLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDAN 292
Query: 232 NATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEF 291
+D LW IT TIGYGD P T G+++ ++G+ AL ++
Sbjct: 293 KEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFAL 352
Query: 292 NKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFYKHTRRKESHAARRHQRKLL 345
E+H ++ ++ + AA ++Q W Y + S A + K L
Sbjct: 353 KVQEQHRQ------KHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKAL 400
>gi|28373065 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 1 [Homo sapiens]
Length = 932
Score = 47.0 bits (110), Expect = 3e-05
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 12/174 (6%)
Query: 178 SYRSIGALNQVRFRH----WFVAKLYMNTHPGRLLLGLTLG--LWLTTAWVLSVAERQAV 231
S R + L VR W + + H L+ +G + + +++++ + E+ A
Sbjct: 233 SLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDAN 292
Query: 232 NATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEF 291
+D LW IT TIGYGD P T G+++ ++G+ AL ++
Sbjct: 293 KEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFAL 352
Query: 292 NKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFYKHTRRKESHAARRHQRKLL 345
E+H ++ ++ + AA ++Q W Y + S A + K L
Sbjct: 353 KVQEQHRQ------KHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKAL 400
>gi|119395748 potassium voltage-gated channel subfamily A member 1
[Homo sapiens]
Length = 495
Score = 47.0 bits (110), Expect = 3e-05
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 205 GRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGK 264
G L+ L +G+ L ++ V +A + + D W ++ T+GYGD+ P T+ GK
Sbjct: 327 GLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGK 386
Query: 265 IVCLCTGVMGVCCTALLVAVVARKLEF 291
IV + GV AL V V+ +
Sbjct: 387 IVGSLCAIAGVLTIALPVPVIVSNFNY 413
>gi|25952108 potassium voltage-gated channel delayed-rectifier
protein S3 [Homo sapiens]
Length = 491
Score = 46.2 bits (108), Expect = 6e-05
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 205 GRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGK 264
G LLL L++G+ + + + SV + ++ + W I+ T+GYGD P T+ GK
Sbjct: 325 GLLLLFLSVGISIFSVLIYSVEKDDHTSSLTSIPICWWWATISMTTVGYGDTHPVTLAGK 384
Query: 265 IVCLCTGVMGVCCTALLVAVVARKLEFNKAEKH 297
++ + G+ AL + ++ FNK K+
Sbjct: 385 LIASTCIICGILVVALPITII-----FNKFSKY 412
>gi|4826782 potassium voltage-gated channel, shaker-related
subfamily, member 2 [Homo sapiens]
Length = 499
Score = 46.2 bits (108), Expect = 6e-05
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 205 GRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGK 264
G L+ L +G+ L ++ V + + + D W ++ T+GYGD+VP T+ GK
Sbjct: 329 GLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 388
Query: 265 IVCLCTGVMGVCCTALLVAVVARKLEF 291
IV + GV AL V V+ +
Sbjct: 389 IVGSLCAIAGVLTIALPVPVIVSNFNY 415
>gi|88758565 potassium voltage-gated channel, shaker-related
subfamily, member 3 [Homo sapiens]
Length = 575
Score = 45.8 bits (107), Expect = 7e-05
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 205 GRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGK 264
G L+ L +G+ L ++ V + + D W +T T+GYGD+ P T+ GK
Sbjct: 399 GLLIFFLFIGVILFSSAVYFAEADDPTSGFSSIPDAFWWAVVTMTTVGYGDMHPVTIGGK 458
Query: 265 IVCLCTGVMGVCCTALLVAVVARKLEF 291
IV + GV AL V V+ +
Sbjct: 459 IVGSLCAIAGVLTIALPVPVIVSNFNY 485
>gi|4504817 potassium voltage-gated channel, shaker-related
subfamily, member 4 [Homo sapiens]
Length = 653
Score = 44.7 bits (104), Expect = 2e-04
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 205 GRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGK 264
G L+ L +G+ L ++ V + + D W +T T+GYGD+ P T+ GK
Sbjct: 479 GLLIFFLFIGVILFSSAVYFAEADEPTTHFQSIPDAFWWAVVTMTTVGYGDMKPITVGGK 538
Query: 265 IVCLCTGVMGVCCTALLVAVVARKLEF 291
IV + GV AL V V+ +
Sbjct: 539 IVGSLCAIAGVLTIALPVPVIVSNFNY 565
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,641,881
Number of Sequences: 37866
Number of extensions: 680242
Number of successful extensions: 3024
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 2874
Number of HSP's gapped (non-prelim): 182
length of query: 427
length of database: 18,247,518
effective HSP length: 105
effective length of query: 322
effective length of database: 14,271,588
effective search space: 4595451336
effective search space used: 4595451336
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.