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Search of human proteins with 4504593
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504593 interferon, alpha 16 [Homo sapiens]
(189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504593 interferon, alpha 16 [Homo sapiens] 377 e-105
gi|10835103 interferon, alpha 4 [Homo sapiens] 335 1e-92
gi|4504589 interferon, alpha 10 [Homo sapiens] 327 4e-90
gi|10880985 interferon, alpha 17 [Homo sapiens] 327 5e-90
gi|71143135 interferon, alpha 7 [Homo sapiens] 322 1e-88
gi|169791013 interferon, alpha 21 [Homo sapiens] 318 2e-87
gi|170763491 interferon, alpha 14 [Homo sapiens] 315 1e-86
gi|4504597 interferon, alpha 5 [Homo sapiens] 314 3e-86
gi|11067751 interferon, alpha 2 [Homo sapiens] 299 8e-82
gi|42476083 interferon, alpha 8 [Homo sapiens] 296 7e-81
gi|11128015 interferon, alpha 6 [Homo sapiens] 296 9e-81
gi|194394174 interferon, alpha 13 precursor [Homo sapiens] 286 7e-78
gi|13128950 interferon, alpha 1 [Homo sapiens] 285 2e-77
gi|4504605 interferon, omega 1 [Homo sapiens] 203 6e-53
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens] 103 9e-23
gi|28882045 interferon, epsilon [Homo sapiens] 100 1e-21
gi|112789564 interferon kappa precursor [Homo sapiens] 81 5e-16
gi|68303635 mutS homolog 3 [Homo sapiens] 30 1.6
gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens] 28 4.7
>gi|4504593 interferon, alpha 16 [Homo sapiens]
Length = 189
Score = 377 bits (968), Expect = e-105
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
Sbjct: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
Sbjct: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
Query: 181 LQKGLRRKD 189
LQKGLRRKD
Sbjct: 181 LQKGLRRKD 189
>gi|10835103 interferon, alpha 4 [Homo sapiens]
Length = 189
Score = 335 bits (859), Expect = 1e-92
Identities = 168/189 (88%), Positives = 177/189 (93%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDR+DFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
FP+E FDG+QFQKAQAIS HEMIQQTFNLFST+DSSAAW+++LL+KF EL+QQLNDLE
Sbjct: 61 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV QEVGVEE LMNEDSILAVRKYFQRITLYL KKYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 LQKGLRRKD 189
LQK LRRKD
Sbjct: 181 LQKRLRRKD 189
>gi|4504589 interferon, alpha 10 [Homo sapiens]
Length = 189
Score = 327 bits (838), Expect = 4e-90
Identities = 165/189 (87%), Positives = 174/189 (92%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILL QMGRIS FSCLKDR+DF
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
PQE FDGNQFQKAQAIS HEMIQQTFNLFST+DSSAAW+++LL+KF EL+QQLNDLE
Sbjct: 61 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV QEVGVEE LMNEDSILAVRKYFQRITLYL+ +KYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 LQKGLRRKD 189
LQK LRRKD
Sbjct: 181 LQKRLRRKD 189
>gi|10880985 interferon, alpha 17 [Homo sapiens]
Length = 189
Score = 327 bits (837), Expect = 5e-90
Identities = 165/189 (87%), Positives = 174/189 (92%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRIS FSCLKDR+DFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
PQE FDGNQFQK QAIS HEMIQQTFNLFST+DSSAAW+++LL+KF EL+QQLN+LE
Sbjct: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV QEVG+EE LMNEDSILAVRKYFQRITLYL KKYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 LQKGLRRKD 189
LQK LRRKD
Sbjct: 181 LQKILRRKD 189
>gi|71143135 interferon, alpha 7 [Homo sapiens]
Length = 189
Score = 322 bits (825), Expect = 1e-88
Identities = 162/189 (85%), Positives = 173/189 (91%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MA SFSLLM VLVLSYKSICSLGCDLPQTHSL NRRALILLAQMGRIS FSCLKDR++F
Sbjct: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
FP+E FDG+QFQK QAIS HEMIQQTFNLFST+DSSAAW+++LL+KF EL+QQLNDLE
Sbjct: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV QEVGVEE LMNED ILAVRKYFQRITLYLM KKYSPCAWEVVRAEIMRSFSFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
Query: 181 LQKGLRRKD 189
L+KGLRRKD
Sbjct: 181 LKKGLRRKD 189
>gi|169791013 interferon, alpha 21 [Homo sapiens]
Length = 189
Score = 318 bits (814), Expect = 2e-87
Identities = 162/189 (85%), Positives = 170/189 (89%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRIS FSCLKDR+DFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
FPQE FDGNQFQKAQAIS HEMIQQTFNLFSTKDSSA W+++LL+KF EL QQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV QEVGVEE LMN DSILAV+KYFQRITLYL KKYSPCAWEVVRAEIMRSFS S
Sbjct: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
Query: 181 LQKGLRRKD 189
Q+ LRRK+
Sbjct: 181 FQERLRRKE 189
>gi|170763491 interferon, alpha 14 [Homo sapiens]
Length = 189
Score = 315 bits (807), Expect = 1e-86
Identities = 158/189 (83%), Positives = 171/189 (90%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MAL F+L+MA++VLS KS CSLGC+L QTHSL NRR L+L+AQM RIS FSCLKDR+DF
Sbjct: 1 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
FPQE FDGNQFQKAQAIS HEM+QQTFNLFSTK+SSAAWDETLL+KFYIELFQQ+NDLE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV QEVGVEE LMNEDSILAV+KYFQRITLYLM KKYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 LQKGLRRKD 189
LQK LRRKD
Sbjct: 181 LQKRLRRKD 189
>gi|4504597 interferon, alpha 5 [Homo sapiens]
Length = 189
Score = 314 bits (805), Expect = 3e-86
Identities = 156/189 (82%), Positives = 168/189 (88%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MAL F LLMA++VL+ KSICSLGCDLPQTHSL NRR L+++AQMGRIS FSCLKDR+DFG
Sbjct: 1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
FPQE FDGNQFQKAQAIS HEMIQQTFNLFSTKDSSA WDETLLDKFY EL+QQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
AC+ QEVGVE+ LMN DSIL VRKYFQRITLYL KKYSPCAWEVVRAEIMRSFS S N
Sbjct: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
Query: 181 LQKGLRRKD 189
LQ+ LRRK+
Sbjct: 181 LQERLRRKE 189
>gi|11067751 interferon, alpha 2 [Homo sapiens]
Length = 188
Score = 299 bits (766), Expect = 8e-82
Identities = 153/189 (80%), Positives = 165/189 (87%), Gaps = 1/189 (0%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MAL+F+LL+A+LVLS KS CS+GCDLPQTHSLG+RR L+LLAQM RIS FSCLKDR+DFG
Sbjct: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
FPQE F GNQFQKA+ I HEMIQQ FNLFSTKDSSAAWDETLLDKFY EL+QQLNDLE
Sbjct: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV Q VGV E LM EDSILAVRKYFQRITLYL KKYSPCAWEVVRAEIMRSFS STN
Sbjct: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
Query: 181 LQKGLRRKD 189
LQ+ LR K+
Sbjct: 180 LQESLRSKE 188
>gi|42476083 interferon, alpha 8 [Homo sapiens]
Length = 189
Score = 296 bits (758), Expect = 7e-81
Identities = 155/189 (82%), Positives = 164/189 (86%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MAL+F LL+A++VLSYKS SLGCDLPQTHSLGNRRALILLAQM RIS FSCLKDR+DF
Sbjct: 1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
FPQE FD QFQKAQAIS HEMIQQTFNLFSTKDSSAA DETLLD+FYIEL QQLNDLE
Sbjct: 61 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
+CV QEVGV E LM EDSILAVRKYFQRITLYL KKYS CAWEVVRAEIMRSFS S N
Sbjct: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
Query: 181 LQKGLRRKD 189
LQK L+ K+
Sbjct: 181 LQKRLKSKE 189
>gi|11128015 interferon, alpha 6 [Homo sapiens]
Length = 189
Score = 296 bits (757), Expect = 9e-81
Identities = 151/189 (79%), Positives = 163/189 (86%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MAL F+LLMA++VLS KS CSL CDLPQTHSLG+RR ++LLAQM RIS FSCLKDR+DF
Sbjct: 1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
FPQE FDGNQFQKA+AIS HE+IQQTFNLFSTKDSS AWDE LLDK Y EL+QQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV QEV V LMNEDSILAVRKYFQRITLYL KKYSPCAWEVVRAEIMRSFS S N
Sbjct: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
Query: 181 LQKGLRRKD 189
LQ+ LRRK+
Sbjct: 181 LQERLRRKE 189
>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
Length = 190
Score = 286 bits (732), Expect = 7e-78
Identities = 146/189 (77%), Positives = 159/189 (84%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MA F+LLMA++VLS KS CSLGCDLP+THSL NRR L+LLAQM RIS SCL DR+DFG
Sbjct: 2 MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
FPQE FDGNQFQKA AIS HE+IQQ FNLF+TKDSSAAWDE LLDKF EL+QQLNDLE
Sbjct: 62 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV QE V E LMN DSILAV+KYF+RITLYL KKYSPCAWEVVRAEIMRS S STN
Sbjct: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
Query: 181 LQKGLRRKD 189
LQ+ LRRK+
Sbjct: 182 LQERLRRKE 190
>gi|13128950 interferon, alpha 1 [Homo sapiens]
Length = 189
Score = 285 bits (728), Expect = 2e-77
Identities = 145/189 (76%), Positives = 158/189 (83%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MA F+LLM ++VLS KS CSLGCDLP+THSL NRR L+LLAQM RIS SCL DR+DFG
Sbjct: 1 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
FPQE FDGNQFQKA AIS HE+IQQ FNLF+TKDSSAAWDE LLDKF EL+QQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 120
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV QE V E LMN DSILAV+KYF+RITLYL KKYSPCAWEVVRAEIMRS S STN
Sbjct: 121 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 180
Query: 181 LQKGLRRKD 189
LQ+ LRRK+
Sbjct: 181 LQERLRRKE 189
>gi|4504605 interferon, omega 1 [Homo sapiens]
Length = 195
Score = 203 bits (517), Expect = 6e-53
Identities = 107/189 (56%), Positives = 129/189 (68%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
MAL F LL A+++ SY + SLGCDLPQ H L +R L+LL QM RIS F CLKDR DF
Sbjct: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
Query: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
FPQE+ G+Q QKA +S HEM+QQ F+LF T+ SSAAW+ TLLD+ + L QQL LE
Sbjct: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
Query: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
C+ Q VG E A L +R+YFQ I +YL KKYS CAWEVVR EIM+S STN
Sbjct: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
Query: 181 LQKGLRRKD 189
+Q+ LR KD
Sbjct: 181 MQERLRSKD 189
>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
Length = 187
Score = 103 bits (257), Expect = 9e-23
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 2/142 (1%)
Query: 45 GRISHFSCLKDRYDFGFPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETL 104
GR+ + CLKDR +F P+E+ QFQK A +EM+Q F +F SS W+ET+
Sbjct: 47 GRLEY--CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETI 104
Query: 105 LDKFYIELFQQLNDLEACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAW 164
++ ++ Q+N L+ + +++ E+ S L +++Y+ RI YL K+YS CAW
Sbjct: 105 VENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAW 164
Query: 165 EVVRAEIMRSFSFSTNLQKGLR 186
+VR EI+R+F F L LR
Sbjct: 165 TIVRVEILRNFYFINRLTGYLR 186
>gi|28882045 interferon, epsilon [Homo sapiens]
Length = 208
Score = 100 bits (248), Expect = 1e-21
Identities = 57/155 (36%), Positives = 85/155 (54%)
Query: 34 NRRALILLAQMGRISHFSCLKDRYDFGFPQEVFDGNQFQKAQAISAFHEMIQQTFNLFST 93
N+ +L LL ++ +S CL R +F PQ+ Q+QK ++ HEM+QQ F+LF
Sbjct: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
Query: 94 KDSSAAWDETLLDKFYIELFQQLNDLEACVTQEVGVEEIALMNEDSILAVRKYFQRITLY 153
S W+E +KF I+L QQL LEA + E L +++ L V+ YF+RI Y
Sbjct: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
Query: 154 LMGKKYSPCAWEVVRAEIMRSFSFSTNLQKGLRRK 188
L + YS CAW +V+ EI R F +L + L ++
Sbjct: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
>gi|112789564 interferon kappa precursor [Homo sapiens]
Length = 207
Score = 81.3 bits (199), Expect = 5e-16
Identities = 66/203 (32%), Positives = 89/203 (43%), Gaps = 24/203 (11%)
Query: 3 LSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRA----LILLAQMGRISHFSCLKDRYD 58
L +LM + + SL C+L H RR L L+ M CL++
Sbjct: 12 LWLEILMGIFIAG---TLSLDCNLLNVHL---RRVTWQNLRHLSSMSNSFPVECLRENIA 65
Query: 59 FGFPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLND 118
F PQE Q K AF+EM Q FN+FS + + W E L + I L QQ
Sbjct: 66 FELPQEFLQYTQPMKRDIKKAFYEMSLQAFNIFS-QHTFKYWKERHLKQIQIGLDQQAEY 124
Query: 119 LEACVTQEVGV-EEIALMNED------------SILAVRKYFQRITLYLMGKKYSPCAWE 165
L C+ ++ E++ M E+ S L +R+YF RI +L KKYS CAWE
Sbjct: 125 LNQCLEEDKNENEDMKEMKENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWE 184
Query: 166 VVRAEIMRSFSFSTNLQKGLRRK 188
+VR EI R + RRK
Sbjct: 185 IVRVEIRRCLYYFYKFTALFRRK 207
>gi|68303635 mutS homolog 3 [Homo sapiens]
Length = 1137
Score = 29.6 bits (65), Expect = 1.6
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 65 VFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLEACVT 124
+FD +QF + + HE +Q+T + + K S + + T L+ YIE+ QQ D CV
Sbjct: 197 LFDLSQFGSS---NTSHENLQKTASKSANKRSKSIY--TPLELQYIEMKQQHKDAVLCV- 250
Query: 125 QEVGVEEIALMNEDSILAVRK 145
E G + ED+ +A R+
Sbjct: 251 -ECGY-KYRFFGEDAEIAARE 269
>gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens]
Length = 416
Score = 28.1 bits (61), Expect = 4.7
Identities = 10/36 (27%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 112 LFQQLNDLEACVTQEVGVEEIALMNEDSILAVRKYF 147
++Q LN C+ E+G+ ++ + +++S+ + R+YF
Sbjct: 227 IYQVLNGSRLCIKAEMGI-QLIVQDKESVFSPRRYF 261
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.136 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,078,511
Number of Sequences: 37866
Number of extensions: 227614
Number of successful extensions: 581
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 19
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.