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Search of human proteins with 4504195
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504195 general transcription factor IIE, polypeptide 2,
beta 34kDa [Homo sapiens]
(291 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504195 general transcription factor IIE, polypeptide 2, beta... 575 e-164
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.13
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 34 0.17
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 34 0.17
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.29
gi|189491742 ataxin 7 isoform b [Homo sapiens] 33 0.39
gi|4506797 ataxin 7 isoform a [Homo sapiens] 33 0.39
gi|66528888 Fanconi anemia complementation group D2 isoform b [H... 32 0.66
gi|21361861 Fanconi anemia complementation group D2 isoform a [H... 32 0.66
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 32 0.66
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 32 0.66
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] 32 0.66
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] 32 0.66
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] 32 0.66
gi|4758832 neuregulin 2 isoform 1 [Homo sapiens] 32 0.66
gi|58743369 hypothetical protein LOC139231 [Homo sapiens] 32 0.86
gi|47933339 RNA binding motif protein 15 [Homo sapiens] 31 1.1
gi|33457330 tetratricopeptide repeat domain 14 isoform a [Homo s... 31 1.1
gi|71725360 zinc finger protein 609 [Homo sapiens] 31 1.1
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens] 31 1.1
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 31 1.5
gi|110611228 utrophin [Homo sapiens] 30 1.9
gi|142976783 PDZ domain containing RING finger 4 [Homo sapiens] 30 1.9
gi|186928829 dermokine isoform 4 precursor [Homo sapiens] 30 1.9
gi|186928827 dermokine isoform 5 precursor [Homo sapiens] 30 1.9
gi|186928825 dermokine isoform 3 precursor [Homo sapiens] 30 1.9
gi|33504489 dermokine isoform 2 precursor [Homo sapiens] 30 1.9
gi|156523268 transcriptional adaptor 2 (ADA2 homolog, yeast)-bet... 30 1.9
gi|110347427 ubiquitin specific protease 34 [Homo sapiens] 30 1.9
gi|158534055 round spermatid basic protein 1-like [Homo sapiens] 30 1.9
>gi|4504195 general transcription factor IIE, polypeptide 2, beta
34kDa [Homo sapiens]
Length = 291
Score = 575 bits (1482), Expect = e-164
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG 60
MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
Sbjct: 1 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG 60
Query: 61 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM 120
SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
Sbjct: 61 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM 120
Query: 121 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK 180
TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
Sbjct: 121 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK 180
Query: 181 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ 240
AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
Sbjct: 181 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ 240
Query: 241 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK 291
GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
Sbjct: 241 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK 291
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.3 bits (77), Expect = 0.13
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 19 TPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGS 70
TP KR +SS SSSSSS + SS S +S S+ S + + S S
Sbjct: 2599 TPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
Score = 33.1 bits (74), Expect = 0.29
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 20 PVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGS 61
P E+RS+SS SSSSSS + SS +SD S
Sbjct: 2526 PAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 20 PVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGS 70
P KR S SSSSSS + SS S +S S+ S + + S S
Sbjct: 2598 PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
Score = 28.9 bits (63), Expect = 5.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 13 KKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGS 61
K++ S+ S+SS SSSSSS + SS S +S S+ S
Sbjct: 2602 KRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 33.9 bits (76), Expect = 0.17
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 26 SASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSSG 72
S+SS SSSSSS + G S+ +SD GS + SGSSG
Sbjct: 461 SSSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSSGSSG 507
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 33.9 bits (76), Expect = 0.17
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 26 SASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSSG 72
S+SS SSSSSS + G S+ +SD GS + SGSSG
Sbjct: 461 SSSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSSGSSG 507
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.1 bits (74), Expect = 0.29
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 18 STPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
++P S+SS SSSSSS + SS S +S S+ S + + S SS
Sbjct: 2610 ASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2663
Score = 32.7 bits (73), Expect = 0.39
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 15 RALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
RA S S+SS SSSSSS + SS S +S S+ S + + S SS
Sbjct: 2608 RAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2664
Score = 32.3 bits (72), Expect = 0.50
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 16 ALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
A S+ S+SS SSSSSS + SS S +S S+ S + + S SS
Sbjct: 2604 AASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659
Score = 31.2 bits (69), Expect = 1.1
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 16 ALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
A S+ S+SS SSSSSS + SS S +S S+ S + + S SS
Sbjct: 2613 ASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2668
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 26 SASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
S+SS SSSSSS + SS S +S S+ S + + S SS
Sbjct: 2624 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2669
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 26 SASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
S+SS SSSSSS + SS S +S S+ S + + S SS
Sbjct: 2625 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 26 SASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
S+SS SSSSSS + SS S +S S+ S + + S SS
Sbjct: 2626 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2671
Score = 29.6 bits (65), Expect = 3.3
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 26 SASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
S+SS SSSSSS + SS S +S S+ S + + S S+
Sbjct: 2627 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 2672
Score = 28.5 bits (62), Expect = 7.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 26 SASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
S+SS SSSSSS + SS S +S S+ S + + S ++
Sbjct: 2628 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTT 2673
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 32.7 bits (73), Expect = 0.39
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 3 PSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTK----VEHGGSSGSKQNSDHS 58
P L+ + + + S ++ASS +S S KK+K V SS S +S HS
Sbjct: 671 PQKLKSSKSLRPKESSGNSTNCQNASSSTSGGSGKKRKNSSPLLVHSSSSSSSSSSSSHS 730
Query: 59 NGSF--NLKALSG-------SSGYKFGV--LAKIVNYMKTRHQRGDTHPLT 98
SF N A SG +S + G+ + N + RH + P T
Sbjct: 731 MESFRKNCVAHSGPPYPSTVTSSHSIGLNCVTNKANAVNVRHDQSGRGPPT 781
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 32.7 bits (73), Expect = 0.39
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 3 PSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTK----VEHGGSSGSKQNSDHS 58
P L+ + + + S ++ASS +S S KK+K V SS S +S HS
Sbjct: 671 PQKLKSSKSLRPKESSGNSTNCQNASSSTSGGSGKKRKNSSPLLVHSSSSSSSSSSSSHS 730
Query: 59 NGSF--NLKALSG-------SSGYKFGV--LAKIVNYMKTRHQRGDTHPLT 98
SF N A SG +S + G+ + N + RH + P T
Sbjct: 731 MESFRKNCVAHSGPPYPSTVTSSHSIGLNCVTNKANAVNVRHDQSGRGPPT 781
>gi|66528888 Fanconi anemia complementation group D2 isoform b [Homo
sapiens]
Length = 1451
Score = 32.0 bits (71), Expect = 0.66
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 98 TLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEV-----IDGKYAFKPKYNVRDKKALL 152
+L EIL ++QH D+G + L+ + P ++V +D + K + V DK + +
Sbjct: 214 SLPEILGDSQHADVGKELSDLLIENTSLTVPILDVLSSLRLDPNFLLKVRQLVMDKLSSI 273
Query: 153 RLLD 156
RL D
Sbjct: 274 RLED 277
>gi|21361861 Fanconi anemia complementation group D2 isoform a [Homo
sapiens]
Length = 1471
Score = 32.0 bits (71), Expect = 0.66
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 98 TLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEV-----IDGKYAFKPKYNVRDKKALL 152
+L EIL ++QH D+G + L+ + P ++V +D + K + V DK + +
Sbjct: 214 SLPEILGDSQHADVGKELSDLLIENTSLTVPILDVLSSLRLDPNFLLKVRQLVMDKLSSI 273
Query: 153 RLLD 156
RL D
Sbjct: 274 RLED 277
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 32.0 bits (71), Expect = 0.66
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 9 RELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALS 68
R+L K + S+SS SSSSSS + SS S +S S+ S + + S
Sbjct: 133 RKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTS 192
Query: 69 GSSGYK 74
S +K
Sbjct: 193 FSKPHK 198
Score = 31.6 bits (70), Expect = 0.86
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 10 ELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSG 69
E F+++ L RS + SSSSSS + SS S +S S+ S + + S
Sbjct: 129 EDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188
Query: 70 SS 71
SS
Sbjct: 189 SS 190
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 32.0 bits (71), Expect = 0.66
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 25 RSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSSGYKFGVLAKIVNY 84
+S S SSSSSS T G SS S +S S+ S + + SGSS +
Sbjct: 572 KSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSS-SSSSTSGSSSRDSSSSTSSSSE 630
Query: 85 MKTR-----HQRGDTHPLTLDEILDETQHLD 110
++R H R H ++D +T L+
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLE 661
Score = 30.0 bits (66), Expect = 2.5
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 7 RERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKA 66
R R + R ++ + S+SS SSSSS+ GSS S+ +S S+ + +
Sbjct: 559 RSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSS 618
Query: 67 LSGSS 71
SS
Sbjct: 619 RDSSS 623
>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
Length = 844
Score = 32.0 bits (71), Expect = 0.66
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 16 ALSTPVVEKRSASS--ESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKA 66
AL P +EK SS +SSSSSS++ + SGS S +N S + A
Sbjct: 8 ALPPPPLEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPA 60
>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
Length = 852
Score = 32.0 bits (71), Expect = 0.66
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 16 ALSTPVVEKRSASS--ESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKA 66
AL P +EK SS +SSSSSS++ + SGS S +N S + A
Sbjct: 8 ALPPPPLEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPA 60
>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
Length = 858
Score = 32.0 bits (71), Expect = 0.66
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 16 ALSTPVVEKRSASS--ESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKA 66
AL P +EK SS +SSSSSS++ + SGS S +N S + A
Sbjct: 8 ALPPPPLEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPA 60
>gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]
Length = 850
Score = 32.0 bits (71), Expect = 0.66
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 16 ALSTPVVEKRSASS--ESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKA 66
AL P +EK SS +SSSSSS++ + SGS S +N S + A
Sbjct: 8 ALPPPPLEKGRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPA 60
>gi|58743369 hypothetical protein LOC139231 [Homo sapiens]
Length = 388
Score = 31.6 bits (70), Expect = 0.86
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 9 RELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALS 68
RE +K+ S S +S S+SSSS + V SSGS + SN S N+
Sbjct: 259 REAWKRSNFSCASTSGVSGASASASSSS---ASMVSSASSSGSSVGNSASNSSANMSRAH 315
Query: 69 GSSGYKFGVLAKIVNYMKTRHQR 91
S +I + K QR
Sbjct: 316 SDSNLSASAAERIRDSKKRSKQR 338
>gi|47933339 RNA binding motif protein 15 [Homo sapiens]
Length = 977
Score = 31.2 bits (69), Expect = 1.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 19 TPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG 60
+PV KRS E S+S ++ K GGS+GS S G
Sbjct: 51 SPVKAKRSRGGEDSTSRGERSKKLGGSGGSNGSSSGKTDSGG 92
>gi|33457330 tetratricopeptide repeat domain 14 isoform a [Homo
sapiens]
Length = 770
Score = 31.2 bits (69), Expect = 1.1
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 5 LLRERELFKKRALSTPVVEKRSA-----SSESSSSSSKKKKTKVEHGGSSGSKQNSDHSN 59
L E+ L KKR ST SA SS SSSSS K+ K + S S+ + HS+
Sbjct: 462 LKEEKRLKKKRRKSTSSSSVSSADESVSSSSSSSSSGHKRHKKHKRNRSESSRSSRRHSS 521
>gi|71725360 zinc finger protein 609 [Homo sapiens]
Length = 1411
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 18 STPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDH----SNGSFNLKALSGSS 71
+TPV E +AS +S+S K + G GS+ +S+H S+ S ++KA S+
Sbjct: 380 NTPVNETATASDSKGTSNSSKTRAGANSKGRRGSQNSSEHRPPASSTSEDVKASPSSA 437
>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
Length = 170
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 8 ERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKAL 67
ER+ KKR+ S S+ S +S SSS+ ++T SS ++D S+ S + A
Sbjct: 75 ERKAKKKRSKSVTSSSSSSSDSSASDSSSESEETST---SSSSEDSDTDESSSSSSSSAS 131
Query: 68 SGSS 71
S +S
Sbjct: 132 STTS 135
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 30.8 bits (68), Expect = 1.5
Identities = 22/79 (27%), Positives = 32/79 (40%)
Query: 23 EKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSSGYKFGVLAKIV 82
E+ S SS SSSSSS + G SS S + ++ S + S SS
Sbjct: 2139 ERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDS 2198
Query: 83 NYMKTRHQRGDTHPLTLDE 101
+ + + + TH DE
Sbjct: 2199 DEEEAQKRESTTHMKAYDE 2217
>gi|110611228 utrophin [Homo sapiens]
Length = 3433
Score = 30.4 bits (67), Expect = 1.9
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 196 DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISSMQE---SGPKK 252
DK+ + D+ F V +E QK+ ++ + E++ ++ Q ++S + G +
Sbjct: 1357 DKQLTTYLTDRIDAFQVPQEAQKIQAEISAHELTLEELRRNMRSQPLTSPESRTARGGSQ 1416
Query: 253 VAPIQRRKKPASQKKRRFK 271
+ +QR+ + S K + F+
Sbjct: 1417 MDVLQRKLREVSTKFQLFQ 1435
>gi|142976783 PDZ domain containing RING finger 4 [Homo sapiens]
Length = 778
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 2 DPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQ 53
D SL R L K+ L + + +S+S +SS S+ K E G S+ SK+
Sbjct: 499 DSSLPRVINLTNKKNLRSTMAATQSSSGQSSKESTSTKAKTTEQGCSAESKE 550
>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
Length = 386
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 29 SESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
S S SS GSSGS N D++NGS + + SGSS
Sbjct: 235 SGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSS 277
>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
Length = 398
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 29 SESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
S S SS GSSGS N D++NGS + + SGSS
Sbjct: 235 SGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSS 277
>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
Length = 416
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 29 SESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
S S SS GSSGS N D++NGS + + SGSS
Sbjct: 235 SGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSS 277
>gi|33504489 dermokine isoform 2 precursor [Homo sapiens]
Length = 476
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 29 SESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFNLKALSGSS 71
S S SS GSSGS N D++NGS + + SGSS
Sbjct: 235 SGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSS 277
>gi|156523268 transcriptional adaptor 2 (ADA2 homolog, yeast)-beta
[Homo sapiens]
Length = 420
Score = 30.4 bits (67), Expect = 1.9
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 209 QFSVDEEFQKLWRSVTVDSMDEEKIEEY--LKRQGISSMQESGPKKVAPIQRRKKPASQK 266
QF +EF L+ ++ + M KI E +R GI+ M+ES + A++
Sbjct: 264 QFMSCKEFDDLFENMHKEKMLRAKIRELQRYRRNGITKMEESA----------EYEAARH 313
Query: 267 KRRFKTHNEHLAGVLKDYSD 286
KR + N++LAG + D
Sbjct: 314 KREKRKENKNLAGSKRGKED 333
>gi|110347427 ubiquitin specific protease 34 [Homo sapiens]
Length = 3546
Score = 30.4 bits (67), Expect = 1.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 19 TPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNGSFN 63
T V++R + +E S S + GSSG +S HS+GS N
Sbjct: 547 TKHVQQRLSDTEESMQGSSDETANSGEDGSSGPGSSSGHSDGSSN 591
>gi|158534055 round spermatid basic protein 1-like [Homo sapiens]
Length = 846
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 87 TRHQRGDTHPLTLDEILDETQHLDIGL---KQKQWLMTEALVNNPKIEVIDGKYAFKPKY 143
+R + G+ PL D+I D+ + D K+K +M E N +++++ KPK
Sbjct: 183 SREENGEVKPLPRDKIKDKIKERDKEKEREKKKHKVMNEIKKENGEVKILLKSGKEKPKT 242
Query: 144 NVRD 147
N+ D
Sbjct: 243 NIED 246
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,560,598
Number of Sequences: 37866
Number of extensions: 452463
Number of successful extensions: 2816
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2346
Number of HSP's gapped (non-prelim): 329
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.