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Search of human proteins with 4503521
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503521 eukaryotic translation initiation factor 3, subunit
6 48kDa [Homo sapiens]
(445 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503521 eukaryotic translation initiation factor 3, subunit 6... 897 0.0
gi|219842262 COP9 constitutive photomorphogenic homolog subunit ... 34 0.31
gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2 ... 34 0.31
gi|94557301 protein kinase, AMP-activated, alpha 1 catalytic sub... 33 0.40
gi|94557299 protein kinase, AMP-activated, alpha 1 catalytic sub... 33 0.40
gi|46048439 N-acetyltransferase 6 [Homo sapiens] 32 1.2
gi|45827701 pad-1-like [Homo sapiens] 32 1.5
gi|21359972 kelch repeat and BTB (POZ) domain containing 7 [Homo... 31 2.0
gi|23238222 COP9 constitutive photomorphogenic homolog subunit 3... 31 2.6
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 30 3.4
gi|62243374 MAD1-like 1 protein [Homo sapiens] 30 5.8
gi|62243369 MAD1-like 1 protein [Homo sapiens] 30 5.8
gi|62243332 MAD1-like 1 protein [Homo sapiens] 30 5.8
gi|4506221 proteasome 26S non-ATPase subunit 12 isoform 1 [Homo ... 30 5.8
gi|28872765 proteasome 26S non-ATPase subunit 12 isoform 2 [Homo... 30 5.8
gi|57222563 colonic and hepatic tumor over-expressed protein iso... 29 7.5
gi|57164942 colonic and hepatic tumor over-expressed protein iso... 29 7.5
gi|37693525 zinc finger protein 189 isoform 1 [Homo sapiens] 29 7.5
gi|21361116 versican isoform 1 [Homo sapiens] 29 9.9
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens] 29 9.9
>gi|4503521 eukaryotic translation initiation factor 3, subunit 6
48kDa [Homo sapiens]
Length = 445
Score = 897 bits (2319), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 60
MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN
Sbjct: 1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 60
Query: 61 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 120
LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK
Sbjct: 61 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 120
Query: 121 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 180
HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ
Sbjct: 121 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 180
Query: 181 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 240
NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP
Sbjct: 181 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 240
Query: 241 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY 300
QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY
Sbjct: 241 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY 300
Query: 301 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKL 360
VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKL
Sbjct: 301 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKL 360
Query: 361 NMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAM 420
NMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAM
Sbjct: 361 NMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAM 420
Query: 421 NIEKKLNQNSRSEAPNWATQDSGFY 445
NIEKKLNQNSRSEAPNWATQDSGFY
Sbjct: 421 NIEKKLNQNSRSEAPNWATQDSGFY 445
>gi|219842262 COP9 constitutive photomorphogenic homolog subunit 2
isoform 2 [Homo sapiens]
Length = 450
Score = 33.9 bits (76), Expect = 0.31
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 283 QESYTYK-DP----ITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENAR 337
QE+ YK DP +T V Y N D +K L+ S +++D F+ +E+ + N R
Sbjct: 304 QEAKPYKNDPEILAMTNLVSA-YQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIR 362
Query: 338 LFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKID 385
+ + + I I ++ +LN+ + E +V I + + +ID
Sbjct: 363 TQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRID 410
>gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2
isoform 1 [Homo sapiens]
Length = 443
Score = 33.9 bits (76), Expect = 0.31
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 283 QESYTYK-DP----ITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENAR 337
QE+ YK DP +T V Y N D +K L+ S +++D F+ +E+ + N R
Sbjct: 297 QEAKPYKNDPEILAMTNLVSA-YQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIR 355
Query: 338 LFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKID 385
+ + + I I ++ +LN+ + E +V I + + +ID
Sbjct: 356 TQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRID 403
>gi|94557301 protein kinase, AMP-activated, alpha 1 catalytic
subunit isoform 1 [Homo sapiens]
Length = 559
Score = 33.5 bits (75), Expect = 0.40
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 232 IIDLFLYQPQYLN-AIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKD 290
I D Y PQYLN ++ ++ H+L+ T KD+R+ +DL K + E +Y
Sbjct: 237 ICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPKYLFPEDPSYSS 296
Query: 291 PITEFVECLYVNFDFDGAQKKLREC 315
+ + V F+ +++++ C
Sbjct: 297 TMIDDEALKEVCEKFECSEEEVLSC 321
>gi|94557299 protein kinase, AMP-activated, alpha 1 catalytic
subunit isoform 2 [Homo sapiens]
Length = 574
Score = 33.5 bits (75), Expect = 0.40
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 232 IIDLFLYQPQYLN-AIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKD 290
I D Y PQYLN ++ ++ H+L+ T KD+R+ +DL K + E +Y
Sbjct: 252 ICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPKYLFPEDPSYSS 311
Query: 291 PITEFVECLYVNFDFDGAQKKLREC 315
+ + V F+ +++++ C
Sbjct: 312 TMIDDEALKEVCEKFECSEEEVLSC 336
>gi|46048439 N-acetyltransferase 6 [Homo sapiens]
Length = 308
Score = 32.0 bits (71), Expect = 1.2
Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 21 PLLEFLSVKEIYNEKELLQGKLDLLSD---------TNMVDFAMDVYKNLYSDDIPHALR 71
P L L+++ ++ ELL DL++D + + + D + PH
Sbjct: 77 PSLAELTLEPVHRRPELLDACADLINDQWPRSRTSRLHSLGQSSDAFPLCLMLLSPHPTL 136
Query: 72 EKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYL---ADKHGFRQEYL 128
E VV + + +P + E R ++ GR L + L A GFR+ +L
Sbjct: 137 EAAPVVVGHARLSRVLNQPQSLLVETVVVARALRGRGFGRRLMEGLEVFARARGFRKLHL 196
Query: 129 ---DTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNA 165
D ++ Y Y+ G + L F +PAT NA
Sbjct: 197 TTHDQVHFYTHLGYQLGE---PVQGLVFTSRRLPATLLNA 233
>gi|45827701 pad-1-like [Homo sapiens]
Length = 2298
Score = 31.6 bits (70), Expect = 1.5
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 10/145 (6%)
Query: 53 FAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRM 112
F MD + I H L ++T + L +Q+ + + FE + M R
Sbjct: 1982 FQMDTSCVHWKSIIDHLLTHEKT-MFKDLMNMQSSSLKLFSSFEQ----KAMLLKRQAFA 2036
Query: 113 LFDYLADKHGFRQEYLDTLYRYAKFQYECGNYS-GAAEYLYFFRVLVPATDRNALSSLWG 171
+F D++ YL + G S AA+ FFRVL+ L+SLW
Sbjct: 2037 VFSGELDQYHL---YLPLIQERLTDNLRVGQTSIVAAQMFLFFRVLLLRISPQHLTSLWP 2093
Query: 172 KLASEILMQNWDAAMEDLTRLKETI 196
+ SE L+Q + EDL E++
Sbjct: 2094 IMVSE-LIQTFTQLEEDLKDEDESL 2117
>gi|21359972 kelch repeat and BTB (POZ) domain containing 7 [Homo
sapiens]
Length = 684
Score = 31.2 bits (69), Expect = 2.0
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 27/168 (16%)
Query: 198 NNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYL 257
+NS+ S ++ QR + + +FF HP+ D FL Y I TM + +
Sbjct: 324 SNSLVSAAENPPQRLGMCAKEMVIFFGHPR------DPFLCYDPYSGDIYTMPSPLTSFA 377
Query: 258 TTAVITNK--------DVRKRRQVLKDL--VKVIQQESYTYKDPI--TEFVECLYVN--- 302
T +T+ D+ Q KDL K Q D + E ++ Y+N
Sbjct: 378 HTKTVTSSAVCVSPDHDIYLAAQPRKDLWVYKPAQNSWQQLADRLLCREGMDVAYLNGYI 437
Query: 303 ------FDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETF 344
G + K EC SV N + LVA + + L + + +
Sbjct: 438 YILGGRDPITGVKLKEVECYSVQRNQWALVAPVPHSFYSFELIVVQNY 485
>gi|23238222 COP9 constitutive photomorphogenic homolog subunit 3
[Homo sapiens]
Length = 423
Score = 30.8 bits (68), Expect = 2.6
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 351 ISINMLADKLNMT-PEEAERWIVNLIRNARLDAKIDSKLGHVVMG------NNAVSPYQQ 403
+S+ +A ++ ++ P+EAE++++++I + + A I+ K G V NN +
Sbjct: 317 LSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNI 376
Query: 404 VIEKTKSLSFRSQMLAMNIEKKLNQNSRSEAPNWATQDSG 443
E K + ++ AM+ E +N ++ DSG
Sbjct: 377 DQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSG 416
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 30.4 bits (67), Expect = 3.4
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 27 SVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQ-LQ 85
S+ ++ N K+LL GKLD++S +L + LR ++ V+++ + LQ
Sbjct: 1294 SIGQLCNTKDLLLGKLDIISPQLS-------SASLLTPQSAECLRASKSEVLSESSELLQ 1346
Query: 86 AETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDT 130
E E + K ++ + T + + R+ A R+E+ T
Sbjct: 1347 QELEELRKSLQEKDATIRTLQENNHRLSDSIAATSELERKEHEQT 1391
>gi|62243374 MAD1-like 1 protein [Homo sapiens]
Length = 718
Score = 29.6 bits (65), Expect = 5.8
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 26 LSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQ 85
+ VK + +EK+ LQ +LDL A + L + A E++ + Q LQ
Sbjct: 178 MRVKRLESEKQELQEQLDL--QHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQ 235
Query: 86 AETEPIVKMFED-----PETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYR 133
+ IVK + P R+++ R+ + + +G QE L+ L R
Sbjct: 236 EQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQR 288
>gi|62243369 MAD1-like 1 protein [Homo sapiens]
Length = 718
Score = 29.6 bits (65), Expect = 5.8
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 26 LSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQ 85
+ VK + +EK+ LQ +LDL A + L + A E++ + Q LQ
Sbjct: 178 MRVKRLESEKQELQEQLDL--QHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQ 235
Query: 86 AETEPIVKMFED-----PETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYR 133
+ IVK + P R+++ R+ + + +G QE L+ L R
Sbjct: 236 EQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQR 288
>gi|62243332 MAD1-like 1 protein [Homo sapiens]
Length = 718
Score = 29.6 bits (65), Expect = 5.8
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 26 LSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQ 85
+ VK + +EK+ LQ +LDL A + L + A E++ + Q LQ
Sbjct: 178 MRVKRLESEKQELQEQLDL--QHKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQ 235
Query: 86 AETEPIVKMFED-----PETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYR 133
+ IVK + P R+++ R+ + + +G QE L+ L R
Sbjct: 236 EQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQR 288
>gi|4506221 proteasome 26S non-ATPase subunit 12 isoform 1 [Homo
sapiens]
Length = 456
Score = 29.6 bits (65), Expect = 5.8
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 351 ISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVM-----GNNAVSPYQQVI 405
I++ +A L+++ +E+E ++ NL+ N + AK+D G + NN ++ + Q +
Sbjct: 373 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKL 432
Query: 406 EKTKSL 411
SL
Sbjct: 433 NSLMSL 438
>gi|28872765 proteasome 26S non-ATPase subunit 12 isoform 2 [Homo
sapiens]
Length = 436
Score = 29.6 bits (65), Expect = 5.8
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 351 ISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVM-----GNNAVSPYQQVI 405
I++ +A L+++ +E+E ++ NL+ N + AK+D G + NN ++ + Q +
Sbjct: 353 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKL 412
Query: 406 EKTKSL 411
SL
Sbjct: 413 NSLMSL 418
>gi|57222563 colonic and hepatic tumor over-expressed protein
isoform b [Homo sapiens]
Length = 1972
Score = 29.3 bits (64), Expect = 7.5
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 380 LDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAMNIEKKLNQNSRSEAPNW-- 437
LD +D K+G V GNNA + E Q+++M +K N ++SE NW
Sbjct: 683 LDGLVD-KIGDVKCGNNAKEAMTAIAEACMLPWTAEQVVSMAFSQK-NPKNQSETLNWLS 740
Query: 438 -ATQDSGF 444
A ++ GF
Sbjct: 741 NAIKEFGF 748
>gi|57164942 colonic and hepatic tumor over-expressed protein
isoform a [Homo sapiens]
Length = 2032
Score = 29.3 bits (64), Expect = 7.5
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 380 LDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAMNIEKKLNQNSRSEAPNW-- 437
LD +D K+G V GNNA + E Q+++M +K N ++SE NW
Sbjct: 683 LDGLVD-KIGDVKCGNNAKEAMTAIAEACMLPWTAEQVVSMAFSQK-NPKNQSETLNWLS 740
Query: 438 -ATQDSGF 444
A ++ GF
Sbjct: 741 NAIKEFGF 748
>gi|37693525 zinc finger protein 189 isoform 1 [Homo sapiens]
Length = 626
Score = 29.3 bits (64), Expect = 7.5
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 22 LLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQL 81
LL F V + ++E LD + D M+ Y NL S D+ + +++ TV ++
Sbjct: 13 LLTFEDVAVFFTQEEW--DYLDPAQRSLYKDVMMENYGNLVSLDVLNRDKDEEPTVKQEI 70
Query: 82 KQLQAETEP 90
++++ E EP
Sbjct: 71 EEIEEEVEP 79
>gi|21361116 versican isoform 1 [Homo sapiens]
Length = 3396
Score = 28.9 bits (63), Expect = 9.9
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 73 KRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLY 132
K TV+ +++ ++AE + + MFE T Q+ D + L ++EY D +
Sbjct: 2698 KSATVIPEIEGIKAEAKALDDMFES-STLSDGQAIADQSEIIPTLGQFERTQEEYEDKKH 2756
Query: 133 RYAKFQYECGNYSGAAEYL 151
FQ E SGA E L
Sbjct: 2757 AGPSFQPEFS--SGAEEAL 2773
>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
Length = 1844
Score = 28.9 bits (63), Expect = 9.9
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 25 FLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDI--------PHALREKRTT 76
FL K+ N L Q K + + + + VY+++ +DD+ + L K +
Sbjct: 508 FLKEKQYQNRMSLRQRKTEFFKSSTLFNNESLVYEDIANDDLLKVSSLCNNNKLSRKTSI 567
Query: 77 VVAQLK--QLQAETEPIVKMFEDPETTRQ 103
V +K Q +AE+E + P++TR+
Sbjct: 568 PVKDIKLTQSKAESEASLLNVSTPKSTRR 596
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,888,320
Number of Sequences: 37866
Number of extensions: 602323
Number of successful extensions: 1568
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 23
length of query: 445
length of database: 18,247,518
effective HSP length: 105
effective length of query: 340
effective length of database: 14,271,588
effective search space: 4852339920
effective search space used: 4852339920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.