Guide to the Human Genome
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Name: CDK9 Sequence: fasta or formatted (372aa) NCBI GI: 4502747
Description:

cyclin-dependent kinase 9

Referenced in:

Cyclins and Related Functions
RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         22           2
 C cysteine            1.9          7           1
 D aspartate           5.6         21           2
 E glutamate           6.2         23           1
 F phenylalanine       3.8         14           2
 G glycine             5.1         19           1
 H histidine           2.2          8           1
 I isoleucine          5.1         19           1
 K lysine              7.8         29           2
 L leucine            12.1         45           3
 M methionine          3.0         11           1
 N asparagine          4.8         18           1
 P proline             4.8         18           2
 Q glutamine           4.6         17           2
 R arginine            6.2         23           2
 S serine              5.1         19           1
 T threonine           4.8         18           2
 V valine              5.9         22           2
 W tryptophan          1.3          5           1
 Y tyrosine            3.8         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin-dependent kinase 9 
CRKRS                 0.364   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.364   Cdc2-related kinase, arginine/serine-rich isoform 1...
CDC2L5                0.363   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.363   cell division cycle 2-like 5 isoform 2 
CDK10                 0.283   cyclin-dependent kinase 10 isoform a 
CDC2L2                0.279   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.279   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.278   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.278   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.278   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.278   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.278   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.278   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2                  0.274   cell division cycle 2 isoform 1 
CDC2                  0.271   cell division cycle 2 isoform 3 
CDK3                  0.264   cyclin-dependent kinase 3 
PCTK1                 0.264   PCTAIRE protein kinase 1 isoform 2 
PCTK1                 0.264   PCTAIRE protein kinase 1 isoform 1 
CCRK                  0.259   cell cycle related kinase isoform 3 
CDK5                  0.259   cyclin-dependent kinase 5 
CDK2                  0.256   cyclin-dependent kinase 2 isoform 1 
PCTK2                 0.256   PCTAIRE protein kinase 2 
PCTK3                 0.253   PCTAIRE protein kinase 3 isoform a 
PCTK3                 0.253   PCTAIRE protein kinase 3 isoform b 
PCTK3                 0.253   PCTAIRE protein kinase 3 isoform b 
CDK7                  0.252   cyclin-dependent kinase 7 
CDKL1                 0.231   cyclin-dependent kinase-like 1 
CDK10                 0.228   cyclin-dependent kinase 10 isoform d 
PFTK2                 0.228   PFTAIRE protein kinase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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