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Search of human proteins with 4502301
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502301 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C3 precursor [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502301 ATP synthase, H+ transporting, mitochondrial F0 compl... 273 3e-74
gi|50659074 ATP synthase, H+ transporting, mitochondrial F0 comp... 273 3e-74
gi|85794840 ATP synthase, H+ transporting, mitochondrial F0 comp... 193 5e-50
gi|50593533 ATP synthase, H+ transporting, mitochondrial F0 comp... 193 5e-50
gi|50659069 ATP synthase, H+ transporting, mitochondrial F0 comp... 178 2e-45
gi|4885081 ATP synthase, H+ transporting, mitochondrial F0 compl... 178 2e-45
gi|169206305 PREDICTED: similar to hCG1639781 [Homo sapiens] 134 2e-32
gi|239750572 PREDICTED: similar to hCG1639781 [Homo sapiens] 134 2e-32
gi|239744873 PREDICTED: hypothetical protein LOC390424 [Homo sap... 134 2e-32
gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c [Hom... 34 0.047
gi|167466160 chloride channel 7 isoform b [Homo sapiens] 31 0.39
gi|14149607 chloride channel 7 isoform a [Homo sapiens] 31 0.39
gi|49619231 solute carrier family 37 member 1 [Homo sapiens] 31 0.39
gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit... 29 1.1
gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit ... 29 1.1
gi|4506975 solute carrier family 12 (sodium/potassium/chloride t... 29 1.5
gi|156627579 C-type lectin domain family 3, member B [Homo sapiens] 28 2.6
gi|217416366 major facilitator superfamily domain containing 9 [... 28 2.6
gi|40217833 G protein-coupled receptor family C, group 5, member... 28 3.3
gi|40217831 G protein-coupled receptor family C, group 5, member... 28 3.3
gi|192807292 keratin 24 [Homo sapiens] 27 5.7
gi|194363768 homeobox D9 [Homo sapiens] 27 5.7
gi|56790897 LMBR1 domain containing 2 [Homo sapiens] 27 5.7
gi|239740898 PREDICTED: hypothetical protein [Homo sapiens] 27 7.4
gi|119703744 desmoglein 1 preproprotein [Homo sapiens] 27 7.4
gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens] 27 7.4
gi|34452713 Ca2+-dependent secretion activator isoform 2 [Homo s... 27 7.4
gi|34452715 Ca2+-dependent secretion activator isoform 1 [Homo s... 27 7.4
gi|34452711 Ca2+-dependent secretion activator isoform 3 [Homo s... 27 7.4
gi|4502565 calpain, small subunit 1 [Homo sapiens] 26 9.7
>gi|4502301 ATP synthase, H+ transporting, mitochondrial F0 complex,
subunit C3 precursor [Homo sapiens]
Length = 142
Score = 273 bits (698), Expect = 3e-74
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 60
MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
Sbjct: 1 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 60
Query: 61 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 120
QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
Sbjct: 61 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 120
Query: 121 FALSEAMGLFCLMVAFLILFAM 142
FALSEAMGLFCLMVAFLILFAM
Sbjct: 121 FALSEAMGLFCLMVAFLILFAM 142
>gi|50659074 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C3 precursor [Homo sapiens]
Length = 142
Score = 273 bits (698), Expect = 3e-74
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 60
MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
Sbjct: 1 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 60
Query: 61 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 120
QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
Sbjct: 61 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 120
Query: 121 FALSEAMGLFCLMVAFLILFAM 142
FALSEAMGLFCLMVAFLILFAM
Sbjct: 121 FALSEAMGLFCLMVAFLILFAM 142
>gi|85794840 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C2 isoform b precursor [Homo sapiens]
Length = 198
Score = 193 bits (490), Expect = 5e-50
Identities = 106/142 (74%), Positives = 116/142 (81%), Gaps = 1/142 (0%)
Query: 1 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 60
MFAC+K TPSL+++ S++ RP+SA VL RPE T E + + S + R F
Sbjct: 58 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF 116
Query: 61 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 120
QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
Sbjct: 117 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 176
Query: 121 FALSEAMGLFCLMVAFLILFAM 142
FALSEAMGLFCLMVAFLILFAM
Sbjct: 177 FALSEAMGLFCLMVAFLILFAM 198
>gi|50593533 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C2 isoform a precursor [Homo sapiens]
Length = 157
Score = 193 bits (490), Expect = 5e-50
Identities = 106/142 (74%), Positives = 116/142 (81%), Gaps = 1/142 (0%)
Query: 1 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 60
MFAC+K TPSL+++ S++ RP+SA VL RPE T E + + S + R F
Sbjct: 17 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF 75
Query: 61 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 120
QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
Sbjct: 76 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 135
Query: 121 FALSEAMGLFCLMVAFLILFAM 142
FALSEAMGLFCLMVAFLILFAM
Sbjct: 136 FALSEAMGLFCLMVAFLILFAM 157
>gi|50659069 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C1 precursor [Homo sapiens]
Length = 136
Score = 178 bits (451), Expect = 2e-45
Identities = 100/142 (70%), Positives = 109/142 (76%), Gaps = 6/142 (4%)
Query: 1 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 60
M L +P+LIR +R RP+SAS L+ P S + F Q+ +REF
Sbjct: 1 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF 54
Query: 61 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 120
QTS +SRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
Sbjct: 55 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 114
Query: 121 FALSEAMGLFCLMVAFLILFAM 142
FALSEAMGLFCLMVAFLILFAM
Sbjct: 115 FALSEAMGLFCLMVAFLILFAM 136
>gi|4885081 ATP synthase, H+ transporting, mitochondrial F0 complex,
subunit C1 precursor [Homo sapiens]
Length = 136
Score = 178 bits (451), Expect = 2e-45
Identities = 100/142 (70%), Positives = 109/142 (76%), Gaps = 6/142 (4%)
Query: 1 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 60
M L +P+LIR +R RP+SAS L+ P S + F Q+ +REF
Sbjct: 1 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF 54
Query: 61 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 120
QTS +SRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
Sbjct: 55 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 114
Query: 121 FALSEAMGLFCLMVAFLILFAM 142
FALSEAMGLFCLMVAFLILFAM
Sbjct: 115 FALSEAMGLFCLMVAFLILFAM 136
>gi|169206305 PREDICTED: similar to hCG1639781 [Homo sapiens]
Length = 125
Score = 134 bits (338), Expect = 2e-32
Identities = 79/125 (63%), Positives = 88/125 (70%), Gaps = 14/125 (11%)
Query: 7 LACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAIS 66
L CT LIR +SAS L+ P+ S + + ++ +REFQTS +S
Sbjct: 15 LCCTWGLIRT--------VSASFLNSPDNSPKQPSYS------SSPLRVARREFQTSIVS 60
Query: 67 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 126
RDID AAK IGAGAATVGVAGSGAGIG VFGSLIIGYARN SLKQQLFSYA LGFALSEA
Sbjct: 61 RDIDIAAKLIGAGAATVGVAGSGAGIGKVFGSLIIGYARNLSLKQQLFSYATLGFALSEA 120
Query: 127 MGLFC 131
MGLFC
Sbjct: 121 MGLFC 125
>gi|239750572 PREDICTED: similar to hCG1639781 [Homo sapiens]
Length = 125
Score = 134 bits (338), Expect = 2e-32
Identities = 79/125 (63%), Positives = 88/125 (70%), Gaps = 14/125 (11%)
Query: 7 LACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAIS 66
L CT LIR +SAS L+ P+ S + + ++ +REFQTS +S
Sbjct: 15 LCCTWGLIRT--------VSASFLNSPDNSPKQPSYS------SSPLRVARREFQTSIVS 60
Query: 67 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 126
RDID AAK IGAGAATVGVAGSGAGIG VFGSLIIGYARN SLKQQLFSYA LGFALSEA
Sbjct: 61 RDIDIAAKLIGAGAATVGVAGSGAGIGKVFGSLIIGYARNLSLKQQLFSYATLGFALSEA 120
Query: 127 MGLFC 131
MGLFC
Sbjct: 121 MGLFC 125
>gi|239744873 PREDICTED: hypothetical protein LOC390424 [Homo
sapiens]
Length = 125
Score = 134 bits (338), Expect = 2e-32
Identities = 79/125 (63%), Positives = 88/125 (70%), Gaps = 14/125 (11%)
Query: 7 LACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAIS 66
L CT LIR +SAS L+ P+ S + + ++ +REFQTS +S
Sbjct: 15 LCCTWGLIRT--------VSASFLNSPDNSPKQPSYS------SSPLRVARREFQTSIVS 60
Query: 67 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 126
RDID AAK IGAGAATVGVAGSGAGIG VFGSLIIGYARN SLKQQLFSYA LGFALSEA
Sbjct: 61 RDIDIAAKLIGAGAATVGVAGSGAGIGKVFGSLIIGYARNLSLKQQLFSYATLGFALSEA 120
Query: 127 MGLFC 131
MGLFC
Sbjct: 121 MGLFC 125
>gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c [Homo
sapiens]
Length = 155
Score = 33.9 bits (76), Expect = 0.047
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 63 SAISRDIDTAAKFIGAGAA-TVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAIL 119
++++ DI F+ GA +VG++G AG IG V + + G A+ P +LF IL
Sbjct: 78 NSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMIL 133
Query: 120 GFALSEAMGLFCLMVAFLI 138
+E +GL+ L+VA ++
Sbjct: 134 ILIFAEVLGLYGLIVALIL 152
>gi|167466160 chloride channel 7 isoform b [Homo sapiens]
Length = 781
Score = 30.8 bits (68), Expect = 0.39
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 41 GSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSL 99
GS + G G S ++R+F+ R F+ AGAA A GA +G V SL
Sbjct: 230 GSVIAAGISQGRSTSLKRDFKIFEYFRRDTEKRDFVSAGAAAGVSAAFGAPVGGVLFSL 288
>gi|14149607 chloride channel 7 isoform a [Homo sapiens]
Length = 805
Score = 30.8 bits (68), Expect = 0.39
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 41 GSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSL 99
GS + G G S ++R+F+ R F+ AGAA A GA +G V SL
Sbjct: 254 GSVIAAGISQGRSTSLKRDFKIFEYFRRDTEKRDFVSAGAAAGVSAAFGAPVGGVLFSL 312
>gi|49619231 solute carrier family 37 member 1 [Homo sapiens]
Length = 533
Score = 30.8 bits (68), Expect = 0.39
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 52 VSQLIQREFQTSAISRDIDTAAKFIGAG--AATVGVAGSGAGIGTVFGSLIIGYARNPSL 109
V+Q+I QT+ + + G G +GV S +G + GSLI GY +
Sbjct: 160 VTQVINGLVQTTGWPSVVTCLGNWFGKGRRGLIMGVWNSHTSVGNILGSLIAGYWVSTCW 219
Query: 110 KQQLFSYAILGFALSEAMGLFCLMVAFLI 138
S+ + G A+ AMG+ C + FLI
Sbjct: 220 G---LSFVVPG-AIVAAMGIVCFL--FLI 242
>gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
isoform 2 [Homo sapiens]
Length = 158
Score = 29.3 bits (64), Expect = 1.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 67 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 124
R+ GAG TVG++ G +G V + A+NPSL ++ I G
Sbjct: 82 RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 136
Query: 125 EAMGLFCLMVAFL 137
A+GLF ++VA L
Sbjct: 137 SAIGLFGVIVAIL 149
>gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
isoform 1 [Homo sapiens]
Length = 205
Score = 29.3 bits (64), Expect = 1.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 67 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 124
R+ GAG TVG++ G +G V + A+NPSL ++ I G
Sbjct: 129 RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 183
Query: 125 EAMGLFCLMVAFL 137
A+GLF ++VA L
Sbjct: 184 SAIGLFGVIVAIL 196
>gi|4506975 solute carrier family 12 (sodium/potassium/chloride
transporters), member 2 [Homo sapiens]
Length = 1212
Score = 28.9 bits (63), Expect = 1.5
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 17 GSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLI-----QREFQTSAISRDIDT 71
G+ V P A+ SR EG A +G+ + + Q FQ +S +
Sbjct: 36 GTAVPSVPEDAAPASRDGGGVRDEGPAA---AGDGLGRPLGPTPSQSRFQVDLVSENAGR 92
Query: 72 AAKFIGAGAATVGVAGSGAG 91
AA A AA AG+GAG
Sbjct: 93 AAAAAAAAAAAAAAAGAGAG 112
>gi|156627579 C-type lectin domain family 3, member B [Homo sapiens]
Length = 202
Score = 28.1 bits (61), Expect = 2.6
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 17 GSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNG 51
G+R+AY+ + ++P+ +T E V +GA NG
Sbjct: 149 GARIAYKNWETEITAQPDGGKT-ENCAVLSGAANG 182
>gi|217416366 major facilitator superfamily domain containing 9
[Homo sapiens]
Length = 474
Score = 28.1 bits (61), Expect = 2.6
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 60 FQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIG-----YARNPSLKQQLF 114
F S + + K +GA G+ GS GI +F S ++G R SL +
Sbjct: 58 FGVSMVVPLLSLHVKSLGASPTVAGIVGSSYGILQLFSSTLVGCWSDVVGRRSSLLACIL 117
Query: 115 SYAILGFALSEAMGLFCLMVA 135
A+ L A +F ++A
Sbjct: 118 LSALGYLLLGAATNVFLFVLA 138
>gi|40217833 G protein-coupled receptor family C, group 5, member C
isoform b [Homo sapiens]
Length = 453
Score = 27.7 bits (60), Expect = 3.3
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 86 AGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG---FALSEAMGLFCLMVAFLI 138
A +GAGI T F II A P + Q ++LG F L +GLFCL+ A ++
Sbjct: 67 AVAGAGIVTTFVLTIILVASLPFV-QDTKKRSLLGTQVFFLLGTLGLFCLVFACVV 121
>gi|40217831 G protein-coupled receptor family C, group 5, member C
isoform a [Homo sapiens]
Length = 486
Score = 27.7 bits (60), Expect = 3.3
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 86 AGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG---FALSEAMGLFCLMVAFLI 138
A +GAGI T F II A P + Q ++LG F L +GLFCL+ A ++
Sbjct: 100 AVAGAGIVTTFVLTIILVASLPFV-QDTKKRSLLGTQVFFLLGTLGLFCLVFACVV 154
>gi|192807292 keratin 24 [Homo sapiens]
Length = 525
Score = 26.9 bits (58), Expect = 5.7
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 15 RAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAK 74
RAG + R +SA S SR G G + G + G S + A
Sbjct: 11 RAGGSSSAR-VSAGGSSFSSGSRCGLGGSSAQGFRGGASSCSLSGGSSGAFGGSFGGGFG 69
Query: 75 FIGAGAATVGVAGSGAGI--GTVFGSLIIGYAR 105
G G +GSG G G+ FG + G+ R
Sbjct: 70 SCSVGGGFGGASGSGTGFGGGSSFGG-VSGFGR 101
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 26.9 bits (58), Expect = 5.7
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 14 IRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDTAA 73
I+ +R A P +A AS T ST + + + RE Q S+ + +
Sbjct: 160 IKPETRAAPAPATA-------ASTTSSSSTSLSSSSKRTECSVARESQGSS-GPEFSCNS 211
Query: 74 KFIGAGAATVGVAGSGAGIGTVFGS 98
AA G G GAGIG G+
Sbjct: 212 FLQEKAAAATGGTGPGAGIGAATGT 236
>gi|56790897 LMBR1 domain containing 2 [Homo sapiens]
Length = 695
Score = 26.9 bits (58), Expect = 5.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 95 VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMV 134
+FG+ +I A NP L + +G A + GLF L++
Sbjct: 161 IFGAFLIYVAVNPHLHLEWNQLQTIGIAAANTWGLFLLVL 200
>gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1542
Score = 26.6 bits (57), Expect = 7.4
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 35 ASRTGEGSTVFN--GAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGI 92
AS G +T + G+Q + + E T++ + +T G+G T +AGS + I
Sbjct: 59 ASTAGSETTTPSPTGSQTTIVSISGSEITTTSTAGSENTTVSSAGSGTTTASMAGSESTI 118
Query: 93 GT 94
T
Sbjct: 119 ST 120
>gi|119703744 desmoglein 1 preproprotein [Homo sapiens]
Length = 1049
Score = 26.6 bits (57), Expect = 7.4
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 77 GAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPS 108
G+GA + G++G G G+ ++ G+ IG+ R+ S
Sbjct: 987 GSGALSGAGISGGGIGLSSLGGTASIGHMRSSS 1019
>gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens]
Length = 2156
Score = 26.6 bits (57), Expect = 7.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 42 STVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFI 76
+TV NG + +LIQ E + S ID ++K I
Sbjct: 1480 NTVVNGGEQATEELIQEEVEASKTLELIDISSKNI 1514
>gi|34452713 Ca2+-dependent secretion activator isoform 2 [Homo
sapiens]
Length = 1314
Score = 26.6 bits (57), Expect = 7.4
Identities = 22/74 (29%), Positives = 26/74 (35%)
Query: 26 SASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGV 85
S+S E G V A +G R + SA S + GAG G
Sbjct: 5 SSSEEESDEIVEEESGKEVLGSAPSGARLSPSRTSEGSAGSAGLGGGGAGAGAGVGAGGG 64
Query: 86 AGSGAGIGTVFGSL 99
GSGA G G L
Sbjct: 65 GGSGASSGGGAGGL 78
>gi|34452715 Ca2+-dependent secretion activator isoform 1 [Homo
sapiens]
Length = 1353
Score = 26.6 bits (57), Expect = 7.4
Identities = 22/74 (29%), Positives = 26/74 (35%)
Query: 26 SASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGV 85
S+S E G V A +G R + SA S + GAG G
Sbjct: 5 SSSEEESDEIVEEESGKEVLGSAPSGARLSPSRTSEGSAGSAGLGGGGAGAGAGVGAGGG 64
Query: 86 AGSGAGIGTVFGSL 99
GSGA G G L
Sbjct: 65 GGSGASSGGGAGGL 78
>gi|34452711 Ca2+-dependent secretion activator isoform 3 [Homo
sapiens]
Length = 1274
Score = 26.6 bits (57), Expect = 7.4
Identities = 22/74 (29%), Positives = 26/74 (35%)
Query: 26 SASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGV 85
S+S E G V A +G R + SA S + GAG G
Sbjct: 5 SSSEEESDEIVEEESGKEVLGSAPSGARLSPSRTSEGSAGSAGLGGGGAGAGAGVGAGGG 64
Query: 86 AGSGAGIGTVFGSL 99
GSGA G G L
Sbjct: 65 GGSGASSGGGAGGL 78
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 26.2 bits (56), Expect = 9.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 77 GAGAATVGVAGSGAGIGTVFGSLIIG 102
G G G G G G+G V G LI G
Sbjct: 10 GGGGGGGGGGGLGGGLGNVLGGLISG 35
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,329,208
Number of Sequences: 37866
Number of extensions: 160991
Number of successful extensions: 794
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 34
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.