BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4502163 apolipoprotein D precursor [Homo sapiens] (189 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4502163 apolipoprotein D precursor [Homo sapiens] 391 e-109 gi|55743122 retinol-binding protein 4, plasma precursor [Homo sa... 55 3e-08 gi|32171249 prostaglandin H2 D-isomerase [Homo sapiens] 37 0.008 gi|83281200 protogenin [Homo sapiens] 34 0.066 gi|4502067 alpha-1-microglobulin/bikunin preproprotein [Homo sap... 34 0.086 gi|169177936 PREDICTED: similar to hCG1795014 [Homo sapiens] 32 0.25 gi|169179152 PREDICTED: similar to hCG1795014 [Homo sapiens] 32 0.25 gi|169181274 PREDICTED: similar to hCG1795014 [Homo sapiens] 32 0.25 gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 30 0.95 gi|5453603 chaperonin containing TCP1, subunit 2 [Homo sapiens] 30 1.2 gi|9256608 protocadherin beta 14 precursor [Homo sapiens] 30 1.2 gi|38455402 lipocalin 2 [Homo sapiens] 30 1.6 gi|89886464 lipocalcin 12 [Homo sapiens] 29 2.8 gi|34761064 catalytic phosphatidylinositol 3-kinase 3 [Homo sapi... 29 2.8 gi|59710093 G-protein coupled receptor 112 [Homo sapiens] 29 2.8 gi|148727259 solute carrier family 9 (sodium/hydrogen exchanger)... 28 3.6 gi|48717447 lipocalin 9 [Homo sapiens] 28 4.7 gi|4507005 solute carrier family 22 member 5 [Homo sapiens] 28 4.7 gi|189083842 Fc fragment of IgG, low affinity IIIa, receptor (CD... 28 6.1 gi|189083840 Fc fragment of IgG, low affinity IIIa, receptor (CD... 28 6.1 gi|189083838 Fc fragment of IgG, low affinity IIIa, receptor (CD... 28 6.1 gi|189083836 Fc fragment of IgG, low affinity IIIa, receptor (CD... 28 6.1 gi|132814489 low affinity immunoglobulin gamma Fc region recepto... 28 6.1 gi|50726979 Fc fragment of IgG, low affinity IIIa, receptor (CD1... 28 6.1 gi|169790915 carbamoyl-phosphate synthetase 1 isoform a precurso... 27 8.0 gi|21361331 carbamoyl-phosphate synthetase 1 isoform b precursor... 27 8.0 gi|24497490 solute carrier family 22 member 4 [Homo sapiens] 27 8.0 >gi|4502163 apolipoprotein D precursor [Homo sapiens] Length = 189 Score = 391 bits (1005), Expect = e-109 Identities = 189/189 (100%), Positives = 189/189 (100%) Query: 1 MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR 60 MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR Sbjct: 1 MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR 60 Query: 61 CIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI 120 CIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI Sbjct: 61 CIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI 120 Query: 121 LATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVT 180 LATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVT Sbjct: 121 LATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVT 180 Query: 181 DQVNCPKLS 189 DQVNCPKLS Sbjct: 181 DQVNCPKLS 189 >gi|55743122 retinol-binding protein 4, plasma precursor [Homo sapiens] Length = 201 Score = 55.5 bits (132), Expect = 3e-08 Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 45/182 (24%) Query: 2 VMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEI-EKIPTTFENGR 60 V LLLL+AL G+A + + V+ENFD ++ G WY + +K P Sbjct: 4 VWALLLLAALGS------GRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQD 57 Query: 61 CIQANYSLMENG--------KIKVLNQ-ELRAD--GTVNQIEGEATPVNLTEPAKLEVKF 109 I A +S+ E G ++++LN ++ AD GT E +PAK ++K+ Sbjct: 58 NIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTE---------DPAKFKMKY 108 Query: 110 SWFMPSA------PYWILATDYENYALVYSCTCIIQLFHVD------FAWILARNPN-LP 156 W + S +WI+ TDY+ YA+ YSC +L ++D ++++ +R+PN LP Sbjct: 109 -WGVASFLQKGNDDHWIVDTDYDTYAVQYSC----RLLNLDGTCADSYSFVFSRDPNGLP 163 Query: 157 PE 158 PE Sbjct: 164 PE 165 >gi|32171249 prostaglandin H2 D-isomerase [Homo sapiens] Length = 190 Score = 37.4 bits (85), Expect = 0.008 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 20/138 (14%) Query: 3 MLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCI 62 M L LL L L A E Q VQ NF +K+LGRW+ + + R Sbjct: 9 MGLALLGVLGDLQAAPEAQV---------SVQPNFQQDKFLGRWFS-AGLASNSSWLREK 58 Query: 63 QANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYW--- 119 +A S+ ++ + L T + T L +PA +S+ +P+W Sbjct: 59 KAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSY---RSPHWGST 115 Query: 120 ----ILATDYENYALVYS 133 ++ TDY+ YAL+YS Sbjct: 116 YSVSVVETDYDQYALLYS 133 >gi|83281200 protogenin [Homo sapiens] Length = 1150 Score = 34.3 bits (77), Expect = 0.066 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 57 ENGRCIQANYSL-MENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPS 115 +NGR I +N + M N K+ V+NQ + D + Q E + ++ A+L V S PS Sbjct: 362 KNGRKIHSNGRIKMYNSKL-VINQIIPEDDAIYQCMAENSQGSILSRARLTVVMSEDRPS 420 Query: 116 APYWILATDYENYALV 131 APY + A + A++ Sbjct: 421 APYNVHAETMSSSAIL 436 >gi|4502067 alpha-1-microglobulin/bikunin preproprotein [Homo sapiens] Length = 352 Score = 33.9 bits (76), Expect = 0.086 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 13/50 (26%) Query: 4 LLLLLSALAGLFGAAEGQAFHLGKCPNPP----VQENFDVNKYLGRWYEI 49 LLLLLSA A G P PP VQENF++++ G+WY + Sbjct: 7 LLLLLSACL---------AVSAGPVPTPPDNIQVQENFNISRIYGKWYNL 47 >gi|169177936 PREDICTED: similar to hCG1795014 [Homo sapiens] Length = 181 Score = 32.3 bits (72), Expect = 0.25 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 21/136 (15%) Query: 3 MLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCI 62 M+LLLL L A E + N V NFD++K G WY + E Sbjct: 1 MMLLLLCLGLTLVCAQEEEN-------NDAVTSNFDLSKISGEWYSVLLASDCRE----- 48 Query: 63 QANYSLMENGKIKVLNQELRADGTVN---QIEGEATPVNLT--EPAKLEVKFSWFMPSAP 117 + E+G ++V + + G + ++ G T +NL K + + + Sbjct: 49 ----KIEEDGSMRVFVKHIDYLGNSSLTFKLNGNCTEINLACKPTEKNAICSTDYNGLNV 104 Query: 118 YWILATDYENYALVYS 133 IL TDY+NY Y+ Sbjct: 105 IDILETDYDNYIYFYN 120 >gi|169179152 PREDICTED: similar to hCG1795014 [Homo sapiens] Length = 181 Score = 32.3 bits (72), Expect = 0.25 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 21/136 (15%) Query: 3 MLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCI 62 M+LLLL L A E + N V NFD++K G WY + E Sbjct: 1 MMLLLLCLGLTLVCAQEEEN-------NDAVTSNFDLSKISGEWYSVLLASDCRE----- 48 Query: 63 QANYSLMENGKIKVLNQELRADGTVN---QIEGEATPVNLT--EPAKLEVKFSWFMPSAP 117 + E+G ++V + + G + ++ G T +NL K + + + Sbjct: 49 ----KIEEDGSMRVFVKHIDYLGNSSLTFKLNGNCTEINLACKPTEKNAICSTDYNGLNV 104 Query: 118 YWILATDYENYALVYS 133 IL TDY+NY Y+ Sbjct: 105 IDILETDYDNYIYFYN 120 >gi|169181274 PREDICTED: similar to hCG1795014 [Homo sapiens] Length = 181 Score = 32.3 bits (72), Expect = 0.25 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 21/136 (15%) Query: 3 MLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCI 62 M+LLLL L A E + N V NFD++K G WY + E Sbjct: 1 MMLLLLCLGLTLVCAQEEEN-------NDAVTSNFDLSKISGEWYSVLLASDCRE----- 48 Query: 63 QANYSLMENGKIKVLNQELRADGTVN---QIEGEATPVNLT--EPAKLEVKFSWFMPSAP 117 + E+G ++V + + G + ++ G T +NL K + + + Sbjct: 49 ----KIEEDGSMRVFVKHIDYLGNSSLTFKLNGNCTEINLACKPTEKNAICSTDYNGLNV 104 Query: 118 YWILATDYENYALVYS 133 IL TDY+NY Y+ Sbjct: 105 IDILETDYDNYIYFYN 120 >gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1 [Homo sapiens] Length = 3259 Score = 30.4 bits (67), Expect = 0.95 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Query: 27 KCPNPPVQENF----DVNKYLGRWYEIEKIPTTFENGRCIQANYS-LMENGKIKVLNQEL 81 K NP V ++F ++N YL + ++++ E + +S +EN K +L+Q Sbjct: 1819 KSANPAVSKDFSSHDEINNYLQQIDQLKERIAGLEEEKQKNKEFSQTLENEKNTLLSQIS 1878 Query: 82 RADGTVNQIEGEATPVNL 99 DG + ++ E T +NL Sbjct: 1879 TKDGELKMLQEEVTKMNL 1896 >gi|5453603 chaperonin containing TCP1, subunit 2 [Homo sapiens] Length = 535 Score = 30.0 bits (66), Expect = 1.2 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 11/93 (11%) Query: 6 LLLSALAGLFGAAEGQAFHL-----GKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR 60 L + A+ L G+ +A H+ G + + E F ++K +G P EN + Sbjct: 182 LAVEAVLRLKGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIG-----VNQPKRIENAK 236 Query: 61 CIQANYSLMENGKIKVLNQELRADGTVNQIEGE 93 + AN M+ KIK+ +R D T E E Sbjct: 237 ILIANTG-MDTDKIKIFGSRVRVDSTAKVAEIE 268 >gi|9256608 protocadherin beta 14 precursor [Homo sapiens] Length = 798 Score = 30.0 bits (66), Expect = 1.2 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 17/116 (14%) Query: 78 NQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWILATDYENYALVYSCTCI 137 ++++R +N I GE VNL P EV S+ + I ATD L CT + Sbjct: 285 SEDIRKTFEINPISGE---VNLRSPLDFEVIQSYTIN-----IQATD--GGGLSGKCTLL 334 Query: 138 IQLFHVD-------FAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNCP 186 +++ ++ + I R P ET+ +L +IL ++ D +M + Q N P Sbjct: 335 VKVMDINDNPPEVTISSITKRIPENASETLVALFSILDQDSGDNGRMICSIQDNLP 390 >gi|38455402 lipocalin 2 [Homo sapiens] Length = 198 Score = 29.6 bits (65), Expect = 1.6 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Query: 3 MLLLLLSALAGLFGAAEGQAFHLGKCP---NPPVQENFDVNKYLGRWYEI 49 +L L L+ L L A+ L P P+Q+NF N++ G+WY + Sbjct: 5 LLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVV 54 >gi|89886464 lipocalcin 12 [Homo sapiens] Length = 192 Score = 28.9 bits (63), Expect = 2.8 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 19/144 (13%) Query: 29 PNPPVQENFDVNKYLGRWYEIEKIPTTFENG-----RCIQANYSLMENGKIKVLNQELR- 82 P PP ++F N++ G W+ + +F A + L ++G+ +V N R Sbjct: 26 PLPPPMQSFQGNQFQGEWFVLGLAGNSFRPEHRALLNAFTATFELSDDGRFEVWNAMTRG 85 Query: 83 --ADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSA---PYWILATDYENYALVYSCTCI 137 D + A P T +E P A ++ +DY +AL+ S Sbjct: 86 QHCDTWSYVLIPAAQPGQFTVDHGVE-------PGADREETRVVDSDYTQFALMLSRRHT 138 Query: 138 IQLFHVDFAWILARNPNLPPETVD 161 +L + + +L R+ LPP T+D Sbjct: 139 SRLAVLRIS-LLGRSWLLPPGTLD 161 >gi|34761064 catalytic phosphatidylinositol 3-kinase 3 [Homo sapiens] Length = 887 Score = 28.9 bits (63), Expect = 2.8 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%) Query: 139 QLFHVDFAWILARNPN-LPP 157 +LFH+DF +IL R+P LPP Sbjct: 756 KLFHIDFGYILGRDPKPLPP 775 >gi|59710093 G-protein coupled receptor 112 [Homo sapiens] Length = 3080 Score = 28.9 bits (63), Expect = 2.8 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Query: 147 WILARNPN-LPPETVDSLKNILTSNNIDVKKMT 178 W+L+ P+ PP TV + +++TS+ ++V K T Sbjct: 2009 WLLSSLPSGSPPATVSNAPHVMTSSTVEVSKST 2041 >gi|148727259 solute carrier family 9 (sodium/hydrogen exchanger), member 4 [Homo sapiens] Length = 798 Score = 28.5 bits (62), Expect = 3.6 Identities = 12/26 (46%), Positives = 20/26 (76%) Query: 155 LPPETVDSLKNILTSNNIDVKKMTVT 180 L PE V+S+++ILTSN V++ T++ Sbjct: 584 LSPEDVESIRDILTSNMYQVRQRTLS 609 >gi|48717447 lipocalin 9 [Homo sapiens] Length = 176 Score = 28.1 bits (61), Expect = 4.7 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 13/78 (16%) Query: 3 MLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEI----EKIPTTFEN 58 M LLLLS L A E P+ +Q N++V + G WY I + + EN Sbjct: 1 MALLLLSLGLSLIAAQEFD-------PHTVMQRNYNVARVSGVWYSIFMASDDLNRIKEN 53 Query: 59 G--RCIQANYSLMENGKI 74 G R N ++NG + Sbjct: 54 GDLRVFVRNIEHLKNGSL 71 >gi|4507005 solute carrier family 22 member 5 [Homo sapiens] Length = 557 Score = 28.1 bits (61), Expect = 4.7 Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 97 VNLTEPAKLEVKFSWFMPSAPYWILA 122 V LT P L V WF+P +P W+++ Sbjct: 261 VALTMPGVLCVALWWFIPESPRWLIS 286 >gi|189083842 Fc fragment of IgG, low affinity IIIa, receptor (CD16a) isoform d precursor [Homo sapiens] Length = 253 Score = 27.7 bits (60), Expect = 6.1 Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 99 LTEPAKLEVKFSWFMPSAPYWI 120 L++P +LEV W + AP W+ Sbjct: 95 LSDPVQLEVHIGWLLLQAPRWV 116 >gi|189083840 Fc fragment of IgG, low affinity IIIa, receptor (CD16a) isoform c precursor [Homo sapiens] Length = 254 Score = 27.7 bits (60), Expect = 6.1 Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 99 LTEPAKLEVKFSWFMPSAPYWI 120 L++P +LEV W + AP W+ Sbjct: 96 LSDPVQLEVHIGWLLLQAPRWV 117 >gi|189083838 Fc fragment of IgG, low affinity IIIa, receptor (CD16a) isoform c precursor [Homo sapiens] Length = 254 Score = 27.7 bits (60), Expect = 6.1 Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 99 LTEPAKLEVKFSWFMPSAPYWI 120 L++P +LEV W + AP W+ Sbjct: 96 LSDPVQLEVHIGWLLLQAPRWV 117 >gi|189083836 Fc fragment of IgG, low affinity IIIa, receptor (CD16a) isoform b precursor [Homo sapiens] Length = 289 Score = 27.7 bits (60), Expect = 6.1 Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 99 LTEPAKLEVKFSWFMPSAPYWI 120 L++P +LEV W + AP W+ Sbjct: 131 LSDPVQLEVHIGWLLLQAPRWV 152 >gi|132814489 low affinity immunoglobulin gamma Fc region receptor III-B precursor [Homo sapiens] Length = 233 Score = 27.7 bits (60), Expect = 6.1 Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 99 LTEPAKLEVKFSWFMPSAPYWI 120 L++P +LEV W + AP W+ Sbjct: 96 LSDPVQLEVHIGWLLLQAPRWV 117 >gi|50726979 Fc fragment of IgG, low affinity IIIa, receptor (CD16a) isoform a precursor [Homo sapiens] Length = 290 Score = 27.7 bits (60), Expect = 6.1 Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 99 LTEPAKLEVKFSWFMPSAPYWI 120 L++P +LEV W + AP W+ Sbjct: 132 LSDPVQLEVHIGWLLLQAPRWV 153 >gi|169790915 carbamoyl-phosphate synthetase 1 isoform a precursor [Homo sapiens] Length = 1506 Score = 27.3 bits (59), Expect = 8.0 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 15/65 (23%) Query: 41 KYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQELRADGT-VNQIEGEATPVNL 99 K LG+W + EK+P + ++L + +R GT + +IE E PV+ Sbjct: 153 KSLGQWLQEEKVPAIY--------------GVDTRMLTKIIRDKGTMLGKIEFEGQPVDF 198 Query: 100 TEPAK 104 +P K Sbjct: 199 VDPNK 203 >gi|21361331 carbamoyl-phosphate synthetase 1 isoform b precursor [Homo sapiens] Length = 1500 Score = 27.3 bits (59), Expect = 8.0 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 15/65 (23%) Query: 41 KYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQELRADGT-VNQIEGEATPVNL 99 K LG+W + EK+P + ++L + +R GT + +IE E PV+ Sbjct: 147 KSLGQWLQEEKVPAIY--------------GVDTRMLTKIIRDKGTMLGKIEFEGQPVDF 192 Query: 100 TEPAK 104 +P K Sbjct: 193 VDPNK 197 >gi|24497490 solute carrier family 22 member 4 [Homo sapiens] Length = 551 Score = 27.3 bits (59), Expect = 8.0 Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 99 LTEPAKLEVKFSWFMPSAPYWILA 122 LT P L V WF+P +P W+++ Sbjct: 263 LTVPGVLCVPLWWFIPESPRWLIS 286 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.136 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,504,468 Number of Sequences: 37866 Number of extensions: 311427 Number of successful extensions: 628 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 608 Number of HSP's gapped (non-prelim): 28 length of query: 189 length of database: 18,247,518 effective HSP length: 96 effective length of query: 93 effective length of database: 14,612,382 effective search space: 1358951526 effective search space used: 1358951526 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.