Guide to the Human Genome
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Search of human proteins with 4502163

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4502163 apolipoprotein D precursor [Homo sapiens]
         (189 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4502163 apolipoprotein D precursor [Homo sapiens]                  391   e-109
gi|55743122 retinol-binding protein 4, plasma precursor [Homo sa...    55   3e-08
gi|32171249 prostaglandin H2 D-isomerase [Homo sapiens]                37   0.008
gi|83281200 protogenin [Homo sapiens]                                  34   0.066
gi|4502067 alpha-1-microglobulin/bikunin preproprotein [Homo sap...    34   0.086
gi|169177936 PREDICTED: similar to hCG1795014 [Homo sapiens]           32   0.25 
gi|169179152 PREDICTED: similar to hCG1795014 [Homo sapiens]           32   0.25 
gi|169181274 PREDICTED: similar to hCG1795014 [Homo sapiens]           32   0.25 
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ...    30   0.95 
gi|5453603 chaperonin containing TCP1, subunit 2 [Homo sapiens]        30   1.2  
gi|9256608 protocadherin beta 14 precursor [Homo sapiens]              30   1.2  
gi|38455402 lipocalin 2 [Homo sapiens]                                 30   1.6  
gi|89886464 lipocalcin 12 [Homo sapiens]                               29   2.8  
gi|34761064 catalytic phosphatidylinositol 3-kinase 3 [Homo sapi...    29   2.8  
gi|59710093 G-protein coupled receptor 112 [Homo sapiens]              29   2.8  
gi|148727259 solute carrier family 9 (sodium/hydrogen exchanger)...    28   3.6  
gi|48717447 lipocalin 9 [Homo sapiens]                                 28   4.7  
gi|4507005 solute carrier family 22 member 5 [Homo sapiens]            28   4.7  
gi|189083842 Fc fragment of IgG, low affinity IIIa, receptor (CD...    28   6.1  
gi|189083840 Fc fragment of IgG, low affinity IIIa, receptor (CD...    28   6.1  
gi|189083838 Fc fragment of IgG, low affinity IIIa, receptor (CD...    28   6.1  
gi|189083836 Fc fragment of IgG, low affinity IIIa, receptor (CD...    28   6.1  
gi|132814489 low affinity immunoglobulin gamma Fc region recepto...    28   6.1  
gi|50726979 Fc fragment of IgG, low affinity IIIa, receptor (CD1...    28   6.1  
gi|169790915 carbamoyl-phosphate synthetase 1 isoform a precurso...    27   8.0  
gi|21361331 carbamoyl-phosphate synthetase 1 isoform b precursor...    27   8.0  
gi|24497490 solute carrier family 22 member 4 [Homo sapiens]           27   8.0  

>gi|4502163 apolipoprotein D precursor [Homo sapiens]
          Length = 189

 Score =  391 bits (1005), Expect = e-109
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR 60
           MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR
Sbjct: 1   MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR 60

Query: 61  CIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI 120
           CIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI
Sbjct: 61  CIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI 120

Query: 121 LATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVT 180
           LATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVT
Sbjct: 121 LATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVT 180

Query: 181 DQVNCPKLS 189
           DQVNCPKLS
Sbjct: 181 DQVNCPKLS 189


>gi|55743122 retinol-binding protein 4, plasma precursor [Homo
           sapiens]
          Length = 201

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 45/182 (24%)

Query: 2   VMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEI-EKIPTTFENGR 60
           V  LLLL+AL        G+A    +  +  V+ENFD  ++ G WY + +K P       
Sbjct: 4   VWALLLLAALGS------GRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQD 57

Query: 61  CIQANYSLMENG--------KIKVLNQ-ELRAD--GTVNQIEGEATPVNLTEPAKLEVKF 109
            I A +S+ E G        ++++LN  ++ AD  GT    E         +PAK ++K+
Sbjct: 58  NIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTE---------DPAKFKMKY 108

Query: 110 SWFMPSA------PYWILATDYENYALVYSCTCIIQLFHVD------FAWILARNPN-LP 156
            W + S        +WI+ TDY+ YA+ YSC    +L ++D      ++++ +R+PN LP
Sbjct: 109 -WGVASFLQKGNDDHWIVDTDYDTYAVQYSC----RLLNLDGTCADSYSFVFSRDPNGLP 163

Query: 157 PE 158
           PE
Sbjct: 164 PE 165


>gi|32171249 prostaglandin H2 D-isomerase [Homo sapiens]
          Length = 190

 Score = 37.4 bits (85), Expect = 0.008
 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 20/138 (14%)

Query: 3   MLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCI 62
           M L LL  L  L  A E Q           VQ NF  +K+LGRW+    + +     R  
Sbjct: 9   MGLALLGVLGDLQAAPEAQV---------SVQPNFQQDKFLGRWFS-AGLASNSSWLREK 58

Query: 63  QANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYW--- 119
           +A  S+ ++      +  L    T  +     T   L +PA     +S+    +P+W   
Sbjct: 59  KAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSY---RSPHWGST 115

Query: 120 ----ILATDYENYALVYS 133
               ++ TDY+ YAL+YS
Sbjct: 116 YSVSVVETDYDQYALLYS 133


>gi|83281200 protogenin [Homo sapiens]
          Length = 1150

 Score = 34.3 bits (77), Expect = 0.066
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 57  ENGRCIQANYSL-MENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPS 115
           +NGR I +N  + M N K+ V+NQ +  D  + Q   E +  ++   A+L V  S   PS
Sbjct: 362 KNGRKIHSNGRIKMYNSKL-VINQIIPEDDAIYQCMAENSQGSILSRARLTVVMSEDRPS 420

Query: 116 APYWILATDYENYALV 131
           APY + A    + A++
Sbjct: 421 APYNVHAETMSSSAIL 436


>gi|4502067 alpha-1-microglobulin/bikunin preproprotein [Homo
          sapiens]
          Length = 352

 Score = 33.9 bits (76), Expect = 0.086
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 13/50 (26%)

Query: 4  LLLLLSALAGLFGAAEGQAFHLGKCPNPP----VQENFDVNKYLGRWYEI 49
          LLLLLSA           A   G  P PP    VQENF++++  G+WY +
Sbjct: 7  LLLLLSACL---------AVSAGPVPTPPDNIQVQENFNISRIYGKWYNL 47


>gi|169177936 PREDICTED: similar to hCG1795014 [Homo sapiens]
          Length = 181

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 21/136 (15%)

Query: 3   MLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCI 62
           M+LLLL     L  A E +        N  V  NFD++K  G WY +       E     
Sbjct: 1   MMLLLLCLGLTLVCAQEEEN-------NDAVTSNFDLSKISGEWYSVLLASDCRE----- 48

Query: 63  QANYSLMENGKIKVLNQELRADGTVN---QIEGEATPVNLT--EPAKLEVKFSWFMPSAP 117
                + E+G ++V  + +   G  +   ++ G  T +NL      K  +  + +     
Sbjct: 49  ----KIEEDGSMRVFVKHIDYLGNSSLTFKLNGNCTEINLACKPTEKNAICSTDYNGLNV 104

Query: 118 YWILATDYENYALVYS 133
             IL TDY+NY   Y+
Sbjct: 105 IDILETDYDNYIYFYN 120


>gi|169179152 PREDICTED: similar to hCG1795014 [Homo sapiens]
          Length = 181

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 21/136 (15%)

Query: 3   MLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCI 62
           M+LLLL     L  A E +        N  V  NFD++K  G WY +       E     
Sbjct: 1   MMLLLLCLGLTLVCAQEEEN-------NDAVTSNFDLSKISGEWYSVLLASDCRE----- 48

Query: 63  QANYSLMENGKIKVLNQELRADGTVN---QIEGEATPVNLT--EPAKLEVKFSWFMPSAP 117
                + E+G ++V  + +   G  +   ++ G  T +NL      K  +  + +     
Sbjct: 49  ----KIEEDGSMRVFVKHIDYLGNSSLTFKLNGNCTEINLACKPTEKNAICSTDYNGLNV 104

Query: 118 YWILATDYENYALVYS 133
             IL TDY+NY   Y+
Sbjct: 105 IDILETDYDNYIYFYN 120


>gi|169181274 PREDICTED: similar to hCG1795014 [Homo sapiens]
          Length = 181

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 21/136 (15%)

Query: 3   MLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCI 62
           M+LLLL     L  A E +        N  V  NFD++K  G WY +       E     
Sbjct: 1   MMLLLLCLGLTLVCAQEEEN-------NDAVTSNFDLSKISGEWYSVLLASDCRE----- 48

Query: 63  QANYSLMENGKIKVLNQELRADGTVN---QIEGEATPVNLT--EPAKLEVKFSWFMPSAP 117
                + E+G ++V  + +   G  +   ++ G  T +NL      K  +  + +     
Sbjct: 49  ----KIEEDGSMRVFVKHIDYLGNSSLTFKLNGNCTEINLACKPTEKNAICSTDYNGLNV 104

Query: 118 YWILATDYENYALVYS 133
             IL TDY+NY   Y+
Sbjct: 105 IDILETDYDNYIYFYN 120


>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
            transmembrane signal), 1 [Homo sapiens]
          Length = 3259

 Score = 30.4 bits (67), Expect = 0.95
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 27   KCPNPPVQENF----DVNKYLGRWYEIEKIPTTFENGRCIQANYS-LMENGKIKVLNQEL 81
            K  NP V ++F    ++N YL +  ++++     E  +     +S  +EN K  +L+Q  
Sbjct: 1819 KSANPAVSKDFSSHDEINNYLQQIDQLKERIAGLEEEKQKNKEFSQTLENEKNTLLSQIS 1878

Query: 82   RADGTVNQIEGEATPVNL 99
              DG +  ++ E T +NL
Sbjct: 1879 TKDGELKMLQEEVTKMNL 1896


>gi|5453603 chaperonin containing TCP1, subunit 2 [Homo sapiens]
          Length = 535

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 6   LLLSALAGLFGAAEGQAFHL-----GKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR 60
           L + A+  L G+   +A H+     G   +  + E F ++K +G        P   EN +
Sbjct: 182 LAVEAVLRLKGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIG-----VNQPKRIENAK 236

Query: 61  CIQANYSLMENGKIKVLNQELRADGTVNQIEGE 93
            + AN   M+  KIK+    +R D T    E E
Sbjct: 237 ILIANTG-MDTDKIKIFGSRVRVDSTAKVAEIE 268


>gi|9256608 protocadherin beta 14 precursor [Homo sapiens]
          Length = 798

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 17/116 (14%)

Query: 78  NQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWILATDYENYALVYSCTCI 137
           ++++R    +N I GE   VNL  P   EV  S+ +      I ATD     L   CT +
Sbjct: 285 SEDIRKTFEINPISGE---VNLRSPLDFEVIQSYTIN-----IQATD--GGGLSGKCTLL 334

Query: 138 IQLFHVD-------FAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNCP 186
           +++  ++        + I  R P    ET+ +L +IL  ++ D  +M  + Q N P
Sbjct: 335 VKVMDINDNPPEVTISSITKRIPENASETLVALFSILDQDSGDNGRMICSIQDNLP 390


>gi|38455402 lipocalin 2 [Homo sapiens]
          Length = 198

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 3  MLLLLLSALAGLFGAAEGQAFHLGKCP---NPPVQENFDVNKYLGRWYEI 49
          +L L L+ L  L   A+     L   P     P+Q+NF  N++ G+WY +
Sbjct: 5  LLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVV 54


>gi|89886464 lipocalcin 12 [Homo sapiens]
          Length = 192

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 19/144 (13%)

Query: 29  PNPPVQENFDVNKYLGRWYEIEKIPTTFENG-----RCIQANYSLMENGKIKVLNQELR- 82
           P PP  ++F  N++ G W+ +     +F            A + L ++G+ +V N   R 
Sbjct: 26  PLPPPMQSFQGNQFQGEWFVLGLAGNSFRPEHRALLNAFTATFELSDDGRFEVWNAMTRG 85

Query: 83  --ADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSA---PYWILATDYENYALVYSCTCI 137
              D     +   A P   T    +E       P A      ++ +DY  +AL+ S    
Sbjct: 86  QHCDTWSYVLIPAAQPGQFTVDHGVE-------PGADREETRVVDSDYTQFALMLSRRHT 138

Query: 138 IQLFHVDFAWILARNPNLPPETVD 161
            +L  +  + +L R+  LPP T+D
Sbjct: 139 SRLAVLRIS-LLGRSWLLPPGTLD 161


>gi|34761064 catalytic phosphatidylinositol 3-kinase 3 [Homo
           sapiens]
          Length = 887

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)

Query: 139 QLFHVDFAWILARNPN-LPP 157
           +LFH+DF +IL R+P  LPP
Sbjct: 756 KLFHIDFGYILGRDPKPLPP 775


>gi|59710093 G-protein coupled receptor 112 [Homo sapiens]
          Length = 3080

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 147  WILARNPN-LPPETVDSLKNILTSNNIDVKKMT 178
            W+L+  P+  PP TV +  +++TS+ ++V K T
Sbjct: 2009 WLLSSLPSGSPPATVSNAPHVMTSSTVEVSKST 2041


>gi|148727259 solute carrier family 9 (sodium/hydrogen exchanger),
           member 4 [Homo sapiens]
          Length = 798

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 12/26 (46%), Positives = 20/26 (76%)

Query: 155 LPPETVDSLKNILTSNNIDVKKMTVT 180
           L PE V+S+++ILTSN   V++ T++
Sbjct: 584 LSPEDVESIRDILTSNMYQVRQRTLS 609


>gi|48717447 lipocalin 9 [Homo sapiens]
          Length = 176

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 3  MLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEI----EKIPTTFEN 58
          M LLLLS    L  A E         P+  +Q N++V +  G WY I    + +    EN
Sbjct: 1  MALLLLSLGLSLIAAQEFD-------PHTVMQRNYNVARVSGVWYSIFMASDDLNRIKEN 53

Query: 59 G--RCIQANYSLMENGKI 74
          G  R    N   ++NG +
Sbjct: 54 GDLRVFVRNIEHLKNGSL 71


>gi|4507005 solute carrier family 22 member 5 [Homo sapiens]
          Length = 557

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 97  VNLTEPAKLEVKFSWFMPSAPYWILA 122
           V LT P  L V   WF+P +P W+++
Sbjct: 261 VALTMPGVLCVALWWFIPESPRWLIS 286


>gi|189083842 Fc fragment of IgG, low affinity IIIa, receptor
           (CD16a) isoform d precursor [Homo sapiens]
          Length = 253

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 99  LTEPAKLEVKFSWFMPSAPYWI 120
           L++P +LEV   W +  AP W+
Sbjct: 95  LSDPVQLEVHIGWLLLQAPRWV 116


>gi|189083840 Fc fragment of IgG, low affinity IIIa, receptor
           (CD16a) isoform c precursor [Homo sapiens]
          Length = 254

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 99  LTEPAKLEVKFSWFMPSAPYWI 120
           L++P +LEV   W +  AP W+
Sbjct: 96  LSDPVQLEVHIGWLLLQAPRWV 117


>gi|189083838 Fc fragment of IgG, low affinity IIIa, receptor
           (CD16a) isoform c precursor [Homo sapiens]
          Length = 254

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 99  LTEPAKLEVKFSWFMPSAPYWI 120
           L++P +LEV   W +  AP W+
Sbjct: 96  LSDPVQLEVHIGWLLLQAPRWV 117


>gi|189083836 Fc fragment of IgG, low affinity IIIa, receptor
           (CD16a) isoform b precursor [Homo sapiens]
          Length = 289

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 99  LTEPAKLEVKFSWFMPSAPYWI 120
           L++P +LEV   W +  AP W+
Sbjct: 131 LSDPVQLEVHIGWLLLQAPRWV 152


>gi|132814489 low affinity immunoglobulin gamma Fc region receptor
           III-B precursor [Homo sapiens]
          Length = 233

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 99  LTEPAKLEVKFSWFMPSAPYWI 120
           L++P +LEV   W +  AP W+
Sbjct: 96  LSDPVQLEVHIGWLLLQAPRWV 117


>gi|50726979 Fc fragment of IgG, low affinity IIIa, receptor (CD16a)
           isoform a precursor [Homo sapiens]
          Length = 290

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 99  LTEPAKLEVKFSWFMPSAPYWI 120
           L++P +LEV   W +  AP W+
Sbjct: 132 LSDPVQLEVHIGWLLLQAPRWV 153


>gi|169790915 carbamoyl-phosphate synthetase 1 isoform a precursor
           [Homo sapiens]
          Length = 1506

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 15/65 (23%)

Query: 41  KYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQELRADGT-VNQIEGEATPVNL 99
           K LG+W + EK+P  +                  ++L + +R  GT + +IE E  PV+ 
Sbjct: 153 KSLGQWLQEEKVPAIY--------------GVDTRMLTKIIRDKGTMLGKIEFEGQPVDF 198

Query: 100 TEPAK 104
            +P K
Sbjct: 199 VDPNK 203


>gi|21361331 carbamoyl-phosphate synthetase 1 isoform b precursor
           [Homo sapiens]
          Length = 1500

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 15/65 (23%)

Query: 41  KYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQELRADGT-VNQIEGEATPVNL 99
           K LG+W + EK+P  +                  ++L + +R  GT + +IE E  PV+ 
Sbjct: 147 KSLGQWLQEEKVPAIY--------------GVDTRMLTKIIRDKGTMLGKIEFEGQPVDF 192

Query: 100 TEPAK 104
            +P K
Sbjct: 193 VDPNK 197


>gi|24497490 solute carrier family 22 member 4 [Homo sapiens]
          Length = 551

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 99  LTEPAKLEVKFSWFMPSAPYWILA 122
           LT P  L V   WF+P +P W+++
Sbjct: 263 LTVPGVLCVPLWWFIPESPRWLIS 286


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,504,468
Number of Sequences: 37866
Number of extensions: 311427
Number of successful extensions: 628
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 28
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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