Guide to the Human Genome
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Name: RBP4 Sequence: fasta or formatted (201aa) NCBI GI: 55743122
Description:

retinol-binding protein 4, plasma precursor

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         17           2
 C cysteine            3.0          6           1
 D aspartate           9.0         18           2
 E glutamate           5.0         10           2
 F phenylalanine       5.0         10           1
 G glycine             6.5         13           1
 H histidine           1.0          2           1
 I isoleucine          2.0          4           1
 K lysine              5.5         11           2
 L leucine             9.5         19           4
 M methionine          2.5          5           1
 N asparagine          4.5          9           2
 P proline             2.5          5           2
 Q glutamine           4.0          8           1
 R arginine            7.5         15           1
 S serine              6.0         12           2
 T threonine           4.5          9           1
 V valine              7.0         14           1
 W tryptophan          3.0          6           1
 Y tyrosine            4.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinol-binding protein 4, plasma precursor 
APOD                  0.076   apolipoprotein D precursor 
AMBP                  0.033   alpha-1-microglobulin/bikunin preproprotein 
PAEP                  0.030   glycodelin precursor 
PAEP                  0.030   glycodelin precursor 
LOC100129193          0.020   PREDICTED: similar to hCG1795014 
LOC100129193          0.020   PREDICTED: similar to hCG1795014 
LOC100129193          0.020   PREDICTED: similar to hCG1795014 
C8G                   0.018   complement component 8, gamma polypeptide 
LCN2                  0.008   lipocalin 2 
LCN15                 0.008   lipocalin 15 
PRR12                 0.008   proline rich 12 
KIAA1632              0.005   hypothetical protein LOC57724 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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