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Search of human proteins with 42794620
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42794620 Huntingtin interacting protein E [Homo sapiens]
(458 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42794620 Huntingtin interacting protein E [Homo sapiens] 906 0.0
gi|83415184 transmembrane and tetratricopeptide repeat containin... 43 5e-04
gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens] 42 9e-04
gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens] 42 9e-04
gi|170784869 tetratricopeptide repeat domain 13 isoform b [Homo ... 34 0.24
gi|22749211 transmembrane and tetratricopeptide repeat containin... 33 0.70
gi|224809432 transmembrane and tetratricopeptide repeat containi... 32 0.92
gi|221219056 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform... 32 1.2
gi|221219053 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform... 32 1.2
gi|170784867 tetratricopeptide repeat domain 13 isoform a [Homo ... 32 1.2
gi|5729840 tubulin, gamma complex associated protein 2 [Homo sap... 32 1.6
gi|118498362 kinectin 1 isoform b [Homo sapiens] 31 2.7
gi|118498356 kinectin 1 isoform a [Homo sapiens] 31 2.7
gi|118498368 kinectin 1 isoform c [Homo sapiens] 31 2.7
gi|33620775 kinectin 1 isoform a [Homo sapiens] 31 2.7
gi|34878904 synaptonemal complex protein 1 [Homo sapiens] 31 2.7
gi|40254866 chromatin modifying protein 2B [Homo sapiens] 30 3.5
gi|45267824 heparan sulfate (glucosamine) 3-O-sulfotransferase 5... 30 3.5
gi|45446749 kinesin family member 5A [Homo sapiens] 30 4.6
gi|7661950 SH2 domain binding protein 1 [Homo sapiens] 30 4.6
gi|6912398 general transcription factor IIIC, polypeptide 3, 102... 30 4.6
gi|167466177 cell division cycle protein 27 isoform 1 [Homo sapi... 30 6.0
gi|167466175 cell division cycle protein 27 isoform 2 [Homo sapi... 30 6.0
gi|226498382 tetratricopeptide repeat domain 5 [Homo sapiens] 29 7.8
gi|207450721 ganglioside induced differentiation associated prot... 29 7.8
gi|8923143 ganglioside induced differentiation associated protei... 29 7.8
gi|28557777 immunoglobulin-like domain containing receptor 1 [Ho... 29 7.8
>gi|42794620 Huntingtin interacting protein E [Homo sapiens]
Length = 458
Score = 906 bits (2342), Expect = 0.0
Identities = 458/458 (100%), Positives = 458/458 (100%)
Query: 1 MMLIPMASVMAVTEPKWVSVWSRFLWVTLLSMVLGSLLALLLPLGAVEEQCLAVLKGLYL 60
MMLIPMASVMAVTEPKWVSVWSRFLWVTLLSMVLGSLLALLLPLGAVEEQCLAVLKGLYL
Sbjct: 1 MMLIPMASVMAVTEPKWVSVWSRFLWVTLLSMVLGSLLALLLPLGAVEEQCLAVLKGLYL 60
Query: 61 LRSKPDRAQHAATKCTSPSTELSITSRGATLLVAKTKASPAGKLEARAALNQALEMKRQG 120
LRSKPDRAQHAATKCTSPSTELSITSRGATLLVAKTKASPAGKLEARAALNQALEMKRQG
Sbjct: 61 LRSKPDRAQHAATKCTSPSTELSITSRGATLLVAKTKASPAGKLEARAALNQALEMKRQG 120
Query: 121 KREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALVNR 180
KREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALVNR
Sbjct: 121 KREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALVNR 180
Query: 181 DRTLPLVEEIDQRYFSIIDSKVKKVMSIPKGNSALRRVMEETYYHHIYHTVAIEGNTLTL 240
DRTLPLVEEIDQRYFSIIDSKVKKVMSIPKGNSALRRVMEETYYHHIYHTVAIEGNTLTL
Sbjct: 181 DRTLPLVEEIDQRYFSIIDSKVKKVMSIPKGNSALRRVMEETYYHHIYHTVAIEGNTLTL 240
Query: 241 SEIRHILETRYAVPGKSLEEQNEVIGMHAAMKYINTTLVSRIGSVTISDVLEIHRRVLGY 300
SEIRHILETRYAVPGKSLEEQNEVIGMHAAMKYINTTLVSRIGSVTISDVLEIHRRVLGY
Sbjct: 241 SEIRHILETRYAVPGKSLEEQNEVIGMHAAMKYINTTLVSRIGSVTISDVLEIHRRVLGY 300
Query: 301 VDPVEAGRFRTTQVLVGHHIPPHPQDVEKQMQEFVQWLNSEEAMNLHPVEFAALAHYKLV 360
VDPVEAGRFRTTQVLVGHHIPPHPQDVEKQMQEFVQWLNSEEAMNLHPVEFAALAHYKLV
Sbjct: 301 VDPVEAGRFRTTQVLVGHHIPPHPQDVEKQMQEFVQWLNSEEAMNLHPVEFAALAHYKLV 360
Query: 361 YIHPFIDGNGRTSRLLMNLILMQAGYPPITIRKEQRSDYYHVLEAANEGDVRPFIRFIAK 420
YIHPFIDGNGRTSRLLMNLILMQAGYPPITIRKEQRSDYYHVLEAANEGDVRPFIRFIAK
Sbjct: 361 YIHPFIDGNGRTSRLLMNLILMQAGYPPITIRKEQRSDYYHVLEAANEGDVRPFIRFIAK 420
Query: 421 CTETTLDTLLFATTEYSVALPEAQPNHSGFKETLPVKP 458
CTETTLDTLLFATTEYSVALPEAQPNHSGFKETLPVKP
Sbjct: 421 CTETTLDTLLFATTEYSVALPEAQPNHSGFKETLPVKP 458
>gi|83415184 transmembrane and tetratricopeptide repeat containing 1
[Homo sapiens]
Length = 774
Score = 43.1 bits (100), Expect = 5e-04
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 106 ARAALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTR 165
A+ N A +K QG+ ++A + ALK+ P AL G + +D +A Y R
Sbjct: 375 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLT---RDTAEAKMYYQR 431
Query: 166 ALTISPYHEKALVNRDRTLPLVEEIDQRYFSIIDS 200
AL + P H +AL N L E+ ++ + DS
Sbjct: 432 ALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDS 466
Score = 33.5 bits (75), Expect = 0.41
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 116 MKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEK 175
+ Q + ++A++++ +K PD D +G+F + +A Y +A+ +SP H
Sbjct: 484 LAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHV 543
Query: 176 ALVNRDR 182
A+VN R
Sbjct: 544 AMVNLGR 550
Score = 33.1 bits (74), Expect = 0.54
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 107 RAALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRA 166
RA N +K Q K+E+A L ++K P+F DA + E + +A+ +Y
Sbjct: 441 RALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTG 500
Query: 167 LTISP 171
+ P
Sbjct: 501 IKNCP 505
>gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens]
Length = 1036
Score = 42.4 bits (98), Expect = 9e-04
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 106 ARAALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTR 165
A A N A +++QGK ++A + A+++ P F DA + G +E +D+ A YTR
Sbjct: 351 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 410
Query: 166 ALTISP 171
A+ I+P
Sbjct: 411 AIQINP 416
Score = 37.4 bits (85), Expect = 0.029
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 109 ALNQALEMKR-QGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRAL 167
+LN +KR QG E+A +L+ AL++ P+F A + ++ + +A Y A+
Sbjct: 319 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 378
Query: 168 TISPYHEKALVNRDRTLPLVEEI 190
ISP A N TL ++++
Sbjct: 379 RISPTFADAYSNMGNTLKEMQDV 401
Score = 34.3 bits (77), Expect = 0.24
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 119 QGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYH 173
QG+ A F A+ +DP+F+DA G +E + +A Y RAL++SP H
Sbjct: 194 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 248
Score = 33.9 bits (76), Expect = 0.32
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 96 TKASPAGKLEARAALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKD 155
T A L A A N K +G+ ++A + + HAL++ PDF+D D
Sbjct: 69 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 128
Query: 156 IIQADYLYTRALTISP--YHEKA-LVNRDRTLPLVEEIDQRYFSIIDSK 201
+ A Y AL +P Y ++ L N + L +EE Y I+++
Sbjct: 129 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 177
Score = 32.0 bits (71), Expect = 1.2
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 111 NQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTIS 170
N A QG + A + A+++ P F DA +E + +A+ Y AL +
Sbjct: 254 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 313
Query: 171 PYHEKALVN 179
P H +L N
Sbjct: 314 PTHADSLNN 322
>gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens]
Length = 1046
Score = 42.4 bits (98), Expect = 9e-04
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 106 ARAALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTR 165
A A N A +++QGK ++A + A+++ P F DA + G +E +D+ A YTR
Sbjct: 361 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 420
Query: 166 ALTISP 171
A+ I+P
Sbjct: 421 AIQINP 426
Score = 37.4 bits (85), Expect = 0.029
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 109 ALNQALEMKR-QGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRAL 167
+LN +KR QG E+A +L+ AL++ P+F A + ++ + +A Y A+
Sbjct: 329 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 388
Query: 168 TISPYHEKALVNRDRTLPLVEEI 190
ISP A N TL ++++
Sbjct: 389 RISPTFADAYSNMGNTLKEMQDV 411
Score = 34.3 bits (77), Expect = 0.24
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 119 QGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYH 173
QG+ A F A+ +DP+F+DA G +E + +A Y RAL++SP H
Sbjct: 204 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 258
Score = 33.9 bits (76), Expect = 0.32
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 96 TKASPAGKLEARAALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKD 155
T A L A A N K +G+ ++A + + HAL++ PDF+D D
Sbjct: 79 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 138
Query: 156 IIQADYLYTRALTISP--YHEKA-LVNRDRTLPLVEEIDQRYFSIIDSK 201
+ A Y AL +P Y ++ L N + L +EE Y I+++
Sbjct: 139 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 187
Score = 32.0 bits (71), Expect = 1.2
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 111 NQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTIS 170
N A QG + A + A+++ P F DA +E + +A+ Y AL +
Sbjct: 264 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 323
Query: 171 PYHEKALVN 179
P H +L N
Sbjct: 324 PTHADSLNN 332
>gi|170784869 tetratricopeptide repeat domain 13 isoform b [Homo
sapiens]
Length = 807
Score = 34.3 bits (77), Expect = 0.24
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 8/149 (5%)
Query: 36 SLLALLLPLGAVEEQCLAVLKGLYLLRSKPDRAQHAATKCTSPSTELSITSRGATLLVAK 95
++L +L PLG + E + K + L Q +A T I+ AT
Sbjct: 168 TMLQILSPLGRINEAVNDLTKAIQL--------QPSARLYRHRGTLYFISEDYATAHEDF 219
Query: 96 TKASPAGKLEARAALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKD 155
++ K + A L + L +G ++A + F ALK DF+DA G E +
Sbjct: 220 QQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGN 279
Query: 156 IIQADYLYTRALTISPYHEKALVNRDRTL 184
A + +AL ++ H + L R L
Sbjct: 280 FEAATESFQKALLLNQNHVQTLQLRGMML 308
>gi|22749211 transmembrane and tetratricopeptide repeat containing 2
[Homo sapiens]
Length = 836
Score = 32.7 bits (73), Expect = 0.70
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 120 GKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALVN 179
G++ +A+KLF+ A+++DP + +G F E+ +I+A + +A + + N
Sbjct: 691 GRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFN 750
Query: 180 RDRTL--PLVEEIDQRYFSI 197
L + E ++Y+ +
Sbjct: 751 AAHMLRQASLNEAAEKYYDL 770
Score = 31.2 bits (69), Expect = 2.0
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 89 ATLLVAKTKASPAGKLEAR---AALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTE 145
A L+ A A A +L++ N A +++ E A+K + A ++ P++ AL
Sbjct: 725 ARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMN 784
Query: 146 FGIFSEEDKDIIQADYLYTRALTISP 171
G + + +A+ Y RAL + P
Sbjct: 785 LGAILHLNGRLQKAEANYLRALQLKP 810
>gi|224809432 transmembrane and tetratricopeptide repeat containing
3 [Homo sapiens]
Length = 914
Score = 32.3 bits (72), Expect = 0.92
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 107 RAALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRA 166
+A +++ + + K KA++ ++ AL++D + D I E K+ +A + RA
Sbjct: 564 QAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRA 623
Query: 167 LTISPYHEKALVN 179
L ++P H+ AL N
Sbjct: 624 LELNPKHKLALFN 636
Score = 32.3 bits (72), Expect = 0.92
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 125 AQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALVNRDRTL 184
A+K F L+MDP V + E+KD+++A+ L ++P+
Sbjct: 756 AKKCFERILEMDPSNVQGKHNLCVVYFEEKDLLKAERCLLETLALAPH------------ 803
Query: 185 PLVEEIDQRYFSIIDSKV 202
EE QR+ +I+ K+
Sbjct: 804 ---EEYIQRHLNIVRDKI 818
>gi|221219056 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform 2
[Homo sapiens]
Length = 438
Score = 32.0 bits (71), Expect = 1.2
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 120 GKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALV 178
G+ +AQ + L+MD DAL G+ + I +A + +AL ++P HEKA +
Sbjct: 134 GRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACI 192
>gi|221219053 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform 1
[Homo sapiens]
Length = 494
Score = 32.0 bits (71), Expect = 1.2
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 120 GKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALV 178
G+ +AQ + L+MD DAL G+ + I +A + +AL ++P HEKA +
Sbjct: 190 GRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACI 248
>gi|170784867 tetratricopeptide repeat domain 13 isoform a [Homo
sapiens]
Length = 860
Score = 32.0 bits (71), Expect = 1.2
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 8/145 (5%)
Query: 40 LLLPLGAVEEQCLAVLKGLYLLRSKPDRAQHAATKCTSPSTELSITSRGATLLVAKTKAS 99
+L PLG + E + K + L Q +A T I+ AT ++
Sbjct: 225 ILSPLGRINEAVNDLTKAIQL--------QPSARLYRHRGTLYFISEDYATAHEDFQQSL 276
Query: 100 PAGKLEARAALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQA 159
K + A L + L +G ++A + F ALK DF+DA G E + A
Sbjct: 277 ELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAA 336
Query: 160 DYLYTRALTISPYHEKALVNRDRTL 184
+ +AL ++ H + L R L
Sbjct: 337 TESFQKALLLNQNHVQTLQLRGMML 361
>gi|5729840 tubulin, gamma complex associated protein 2 [Homo
sapiens]
Length = 902
Score = 31.6 bits (70), Expect = 1.6
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 59 YLLRSKPDRAQHAATKCTSPSTELSITSRGATLLVAKTKA--SPAGKLEARAALNQALEM 116
YL ++ +RA+ AA S +T +++ + + + + + + G + + L Q+LE+
Sbjct: 97 YLQQNAKERAELAAAAVGSSTTSINVPAAASKISMQELEELRKQLGSVATGSTLQQSLEL 156
Query: 117 KRQGKREKAQK 127
KR+ R+K K
Sbjct: 157 KRKMLRDKQNK 167
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 30.8 bits (68), Expect = 2.7
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 7/167 (4%)
Query: 61 LRSKPDRAQHAATKCTSPSTELSITSRGATLLVAKTKASPAGKLEARAALNQALEMKRQG 120
++ D + TS EL LL A+ + A E AA ++ LE +Q
Sbjct: 616 IKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHE-LEKMQQS 674
Query: 121 KREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYH------E 174
K K+ + ++ + + + EF I ++++K + ++ P E
Sbjct: 675 VYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQME 734
Query: 175 KALVNRDRTLPLVEEIDQRYFSIIDSKVKKVMSIPKGNSALRRVMEE 221
K + +D L VEE+ + + +K +++ +I NS+L + +++
Sbjct: 735 KCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQD 781
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 30.8 bits (68), Expect = 2.7
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 7/167 (4%)
Query: 61 LRSKPDRAQHAATKCTSPSTELSITSRGATLLVAKTKASPAGKLEARAALNQALEMKRQG 120
++ D + TS EL LL A+ + A E AA ++ LE +Q
Sbjct: 616 IKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHE-LEKMQQS 674
Query: 121 KREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYH------E 174
K K+ + ++ + + + EF I ++++K + ++ P E
Sbjct: 675 VYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQME 734
Query: 175 KALVNRDRTLPLVEEIDQRYFSIIDSKVKKVMSIPKGNSALRRVMEE 221
K + +D L VEE+ + + +K +++ +I NS+L + +++
Sbjct: 735 KCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQD 781
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 30.8 bits (68), Expect = 2.7
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 7/167 (4%)
Query: 61 LRSKPDRAQHAATKCTSPSTELSITSRGATLLVAKTKASPAGKLEARAALNQALEMKRQG 120
++ D + TS EL LL A+ + A E AA ++ LE +Q
Sbjct: 616 IKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHE-LEKMQQS 674
Query: 121 KREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYH------E 174
K K+ + ++ + + + EF I ++++K + ++ P E
Sbjct: 675 VYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQME 734
Query: 175 KALVNRDRTLPLVEEIDQRYFSIIDSKVKKVMSIPKGNSALRRVMEE 221
K + +D L VEE+ + + +K +++ +I NS+L + +++
Sbjct: 735 KCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQD 781
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 30.8 bits (68), Expect = 2.7
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 7/167 (4%)
Query: 61 LRSKPDRAQHAATKCTSPSTELSITSRGATLLVAKTKASPAGKLEARAALNQALEMKRQG 120
++ D + TS EL LL A+ + A E AA ++ LE +Q
Sbjct: 616 IKQTEDSLASERDRLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHE-LEKMQQS 674
Query: 121 KREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYH------E 174
K K+ + ++ + + + EF I ++++K + ++ P E
Sbjct: 675 VYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKSEVQKLQTLVSEQPNKDVVEQME 734
Query: 175 KALVNRDRTLPLVEEIDQRYFSIIDSKVKKVMSIPKGNSALRRVMEE 221
K + +D L VEE+ + + +K +++ +I NS+L + +++
Sbjct: 735 KCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQD 781
>gi|34878904 synaptonemal complex protein 1 [Homo sapiens]
Length = 976
Score = 30.8 bits (68), Expect = 2.7
Identities = 51/214 (23%), Positives = 84/214 (39%), Gaps = 36/214 (16%)
Query: 79 STELSITSRGATLLVAKTKAS----PAGKLEARAALNQALEMKRQGKREKAQKLFMHAL- 133
S E+ +++ A LL K + KL+ A N A +++ K+ + L +
Sbjct: 748 SLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKTQTFLLETPEIY 807
Query: 134 -KMDPDFVDALTEFGIFSEEDKDIIQ--ADYLYTRAL-TISPYHEKALVNRDRTLPLVEE 189
K+D V + T F+ D I + DYL+T A T+S KA + T P +++
Sbjct: 808 WKLDSKAVPSQTVSRNFTSVDHGISKDKRDYLWTSAKNTLSTPLPKAYTVKTPTKPKLQQ 867
Query: 190 IDQRYFSIIDSKVKKVMSIP--------KGNSALRRVMEETYYHHIYH------------ 229
+ I +SK K+ M+ + L V EE +Y
Sbjct: 868 RENLNIPIEESKKKRKMAFEFDINSDSSETTDLLSMVSEEETLKTLYRNNNPPASHLCVK 927
Query: 230 -------TVAIEGNTLTLSEIRHILETRYAVPGK 256
++ G+TL IR + E R+AV K
Sbjct: 928 TPKKAPSSLTTPGSTLKFGAIRKMREDRWAVIAK 961
>gi|40254866 chromatin modifying protein 2B [Homo sapiens]
Length = 213
Score = 30.4 bits (67), Expect = 3.5
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 48 EEQCLAVLKGLYLLRSKPDRAQHAATKCTSPSTELSITS-----RGATLLVAKTKASPAG 102
+E C + K L LR + R ++K TS ST+ + + GA AKT +
Sbjct: 55 KEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNK 114
Query: 103 KLEARAALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDII 157
K++ + L +++ + + + +M D +D + + EE +DI+
Sbjct: 115 KMDPQKTLQTMQNFQKENMKMEMTE------EMINDTLDDIFDGSDDEEESQDIV 163
>gi|45267824 heparan sulfate (glucosamine) 3-O-sulfotransferase 5
[Homo sapiens]
Length = 346
Score = 30.4 bits (67), Expect = 3.5
Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 27/228 (11%)
Query: 21 WSRFLWVTLLSMVLGSLLALLLPLGAVEE-QCLAVLKGLYLLRSKPDRAQHAATKCTSPS 79
W R + L S+ +GSLL L+ +G+++ Q + ++G R A T+ P
Sbjct: 8 WLRQKLLVLGSLAVGSLLYLVARVGSLDRLQPICPIEG---------RLGGARTQAEFPL 58
Query: 80 TELSITSRGATLLVAKTKASPAGKLEARAALNQALEMKRQGKREKAQKLFMHALKMDPDF 139
L RG K AS ++ + Q + G R+ + + L + P
Sbjct: 59 RALQF-KRGLLHEFRKGNASKE-QVRLHDLVQQLPKAIIIGVRKGGTRALLEMLNLHPAV 116
Query: 140 VDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALVNRDRTLPLVEEIDQRYFSIID 199
V A E F + D++ + Y + + S Y ++ + + + EE+ +R + ++
Sbjct: 117 VKASQEIHFF-DNDENYGKGIEWYRKKMPFS-YPQQITIEKSPAYFITEEVPERIYK-MN 173
Query: 200 SKVKKVMSI----PKGNSALRRVME------ETYYHHIYHTVAIEGNT 237
S +K ++ + + S +V+E +TYY + +AI+ NT
Sbjct: 174 SSIKLLIIVREPTTRAISDYTQVLEGKERKNKTYYK--FEKLAIDPNT 219
>gi|45446749 kinesin family member 5A [Homo sapiens]
Length = 1032
Score = 30.0 bits (66), Expect = 4.6
Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 42/250 (16%)
Query: 103 KLEARAALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYL 162
KL+ + + L + +G EK Q+ H L+ + D +E K+++QA
Sbjct: 444 KLKQQMLDQEELLVSTRGDNEKVQRELSH-LQSENDAA---------KDEVKEVLQA--- 490
Query: 163 YTRALTISPYHEKALVNRDRTLPLVEEIDQRYFSIIDSKVKKVMSIPKGNSALRRVMEET 222
E+ VN D+ VEE Q+ ++D +KV ++ S L+R+ E +
Sbjct: 491 ----------LEELAVNYDQKSQEVEEKSQQNQLLVDELSQKVATMLSLESELQRLQEVS 540
Query: 223 YYHHIYHTVAIEGNTLTLSEIRHIL---ETRYAVP-GKSLEEQNEVIGMH-AAMKYINTT 277
+ + G LSE I+ E + V ++EE+ V ++ + +K +
Sbjct: 541 GHQRKRIAEVLNGLMKDLSEFSVIVGNGEIKLPVEISGAIEEEFTVARLYISKIKSEVKS 600
Query: 278 LVSRIGSVTISDVLEIHRRVLGYVDPVEAGRFRTTQVLVGHHIPPHPQDVEKQMQEFVQW 337
+V R + V E HR++ V + Q+L+ H E +++ ++
Sbjct: 601 VVKRCRQLENLQV-ECHRKM-----EVTGRELSSCQLLISQH--------EAKIRSLTEY 646
Query: 338 LNSEEAMNLH 347
+ S E H
Sbjct: 647 MQSVELKKRH 656
>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
Length = 1173
Score = 30.0 bits (66), Expect = 4.6
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 124 KAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKA 176
+A+KL+ + L+ P++VD G + + + +A + AL I+ H A
Sbjct: 515 EAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDA 567
>gi|6912398 general transcription factor IIIC, polypeptide 3, 102kDa
[Homo sapiens]
Length = 886
Score = 30.0 bits (66), Expect = 4.6
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 113 ALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPY 172
A+ + QG EK+ + + A ++P + S E +I QA + YT+AL P
Sbjct: 190 AMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPT 249
Query: 173 HEKALVNR 180
+ + L R
Sbjct: 250 NVRYLWER 257
>gi|167466177 cell division cycle protein 27 isoform 1 [Homo
sapiens]
Length = 830
Score = 29.6 bits (65), Expect = 6.0
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 82 LSITSRGATLLVAKTKASPAGKLEARAALNQALEMKRQGKREKAQKLFMHALKMDPDFVD 141
LS+ S+ T + K SP EA A ++R+ + A K F A+++DP++
Sbjct: 558 LSVLSKDLTDM---DKNSP----EAWCAAGNCFSLQRE--HDIAIKFFQRAIQVDPNYAY 608
Query: 142 ALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALVNRDRTLPLVEEIDQRYFSIIDSK 201
A T G +++ +A + A+ ++P H A L ++ Q FS+ +
Sbjct: 609 AYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYG----LGMI-YYKQEKFSLAEMH 663
Query: 202 VKKVMSIPKGNSAL 215
+K + I +S L
Sbjct: 664 FQKALDINPQSSVL 677
>gi|167466175 cell division cycle protein 27 isoform 2 [Homo
sapiens]
Length = 824
Score = 29.6 bits (65), Expect = 6.0
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 82 LSITSRGATLLVAKTKASPAGKLEARAALNQALEMKRQGKREKAQKLFMHALKMDPDFVD 141
LS+ S+ T + K SP EA A ++R+ + A K F A+++DP++
Sbjct: 552 LSVLSKDLTDM---DKNSP----EAWCAAGNCFSLQRE--HDIAIKFFQRAIQVDPNYAY 602
Query: 142 ALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALVNRDRTLPLVEEIDQRYFSIIDSK 201
A T G +++ +A + A+ ++P H A L ++ Q FS+ +
Sbjct: 603 AYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYG----LGMI-YYKQEKFSLAEMH 657
Query: 202 VKKVMSIPKGNSAL 215
+K + I +S L
Sbjct: 658 FQKALDINPQSSVL 671
>gi|226498382 tetratricopeptide repeat domain 5 [Homo sapiens]
Length = 440
Score = 29.3 bits (64), Expect = 7.8
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 124 KAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALT 168
KA++L A+K++P+ V+A + G + D+ A ++ ALT
Sbjct: 87 KAEELLSKAVKLEPELVEAWNQLGEVYWKKGDVAAAHTCFSGALT 131
>gi|207450721 ganglioside induced differentiation associated protein
2 isoform b [Homo sapiens]
Length = 496
Score = 29.3 bits (64), Expect = 7.8
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 310 RTTQVLVGHHIPPHPQDVEKQMQEFVQWLNSEEAMNLHPVEFAALAHYKLVYIH 363
RT V+VG +IP D++K + F+ H ++ A+ Y LVY H
Sbjct: 350 RTVMVVVGRNIPVTLIDMDKALLYFI-----------HVMDHIAVKEYVLVYFH 392
>gi|8923143 ganglioside induced differentiation associated protein 2
isoform a [Homo sapiens]
Length = 497
Score = 29.3 bits (64), Expect = 7.8
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 310 RTTQVLVGHHIPPHPQDVEKQMQEFVQWLNSEEAMNLHPVEFAALAHYKLVYIH 363
RT V+VG +IP D++K + F+ H ++ A+ Y LVY H
Sbjct: 350 RTVMVVVGRNIPVTLIDMDKALLYFI-----------HVMDHIAVKEYVLVYFH 392
>gi|28557777 immunoglobulin-like domain containing receptor 1 [Homo
sapiens]
Length = 502
Score = 29.3 bits (64), Expect = 7.8
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 26 WVTLLSMVLGSLLALLLPLGAVEEQCLAVLKGLYLLRSKPDRAQHAATKCTSPSTELSIT 85
W+T++ ++LG+LL LLL +G QC Y+ R C P +LS+
Sbjct: 168 WLTVIFIILGALLLLLL-IGVCWCQCCPQYCCCYI------RCPCCPAHCCCPEEDLSLP 220
Query: 86 SRGATLLVAKTKASP 100
S + + +T P
Sbjct: 221 SSLPQMPMTQTTNQP 235
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,990,360
Number of Sequences: 37866
Number of extensions: 644211
Number of successful extensions: 2006
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1966
Number of HSP's gapped (non-prelim): 51
length of query: 458
length of database: 18,247,518
effective HSP length: 106
effective length of query: 352
effective length of database: 14,233,722
effective search space: 5010270144
effective search space used: 5010270144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.